Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03315 and DZA65_RS03320 are separated by 99 nucleotides DZA65_RS03320 and DZA65_RS03325 are separated by 122 nucleotides
DZA65_RS03315: DZA65_RS03315 - phosphopentomutase, at 702,220 to 703,443
_RS03315
DZA65_RS03320: DZA65_RS03320 - purine-nucleoside phosphorylase, at 703,543 to 704,268
_RS03320
DZA65_RS03325: DZA65_RS03325 - ATP-grasp domain-containing protein, at 704,391 to 705,629
_RS03325
Position (kb) 703
704
705 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 702.724 kb on + strand, within DZA65_RS03315 at 702.725 kb on - strand, within DZA65_RS03315 at 702.790 kb on + strand, within DZA65_RS03315 at 702.791 kb on - strand, within DZA65_RS03315 at 702.835 kb on + strand, within DZA65_RS03315 at 703.006 kb on - strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.104 kb on + strand, within DZA65_RS03315 at 703.105 kb on - strand, within DZA65_RS03315 at 703.105 kb on - strand, within DZA65_RS03315 at 703.105 kb on - strand, within DZA65_RS03315 at 703.107 kb on + strand, within DZA65_RS03315 at 703.107 kb on + strand, within DZA65_RS03315 at 703.338 kb on + strand at 703.465 kb on - strand at 703.492 kb on - strand at 703.493 kb on + strand at 703.493 kb on + strand at 703.493 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.496 kb on - strand at 703.496 kb on - strand at 703.496 kb on - strand at 703.548 kb on + strand at 703.549 kb on - strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.558 kb on - strand at 703.558 kb on - strand at 703.624 kb on + strand, within DZA65_RS03320 at 703.625 kb on - strand, within DZA65_RS03320 at 703.625 kb on - strand, within DZA65_RS03320 at 703.625 kb on - strand, within DZA65_RS03320 at 703.700 kb on - strand, within DZA65_RS03320 at 703.759 kb on + strand, within DZA65_RS03320 at 703.759 kb on + strand, within DZA65_RS03320 at 704.023 kb on + strand, within DZA65_RS03320 at 704.024 kb on - strand, within DZA65_RS03320 at 704.024 kb on - strand, within DZA65_RS03320 at 704.062 kb on + strand, within DZA65_RS03320 at 704.101 kb on + strand, within DZA65_RS03320 at 704.102 kb on - strand, within DZA65_RS03320 at 704.128 kb on - strand, within DZA65_RS03320 at 704.309 kb on + strand at 704.309 kb on + strand at 704.310 kb on - strand at 704.364 kb on + strand at 704.373 kb on + strand at 704.374 kb on - strand at 704.377 kb on + strand at 704.397 kb on + strand at 704.398 kb on - strand at 704.437 kb on + strand at 704.437 kb on + strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.476 kb on + strand at 704.476 kb on + strand at 704.477 kb on - strand at 704.480 kb on + strand at 704.480 kb on + strand at 704.481 kb on - strand at 704.481 kb on - strand at 704.483 kb on + strand at 704.483 kb on + strand at 704.484 kb on - strand at 704.539 kb on + strand, within DZA65_RS03325 at 704.540 kb on - strand, within DZA65_RS03325 at 704.658 kb on - strand, within DZA65_RS03325 at 704.713 kb on - strand, within DZA65_RS03325 at 704.769 kb on + strand, within DZA65_RS03325 at 704.817 kb on - strand, within DZA65_RS03325 at 704.882 kb on + strand, within DZA65_RS03325 at 704.883 kb on - strand, within DZA65_RS03325 at 704.884 kb on + strand, within DZA65_RS03325 at 704.885 kb on - strand, within DZA65_RS03325 at 704.949 kb on - strand, within DZA65_RS03325 at 705.064 kb on - strand, within DZA65_RS03325 at 705.226 kb on - strand, within DZA65_RS03325
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 702,724 + DZA65_RS03315 0.41 -0.6 702,725 - DZA65_RS03315 0.41 +1.2 702,790 + DZA65_RS03315 0.47 -1.0 702,791 - DZA65_RS03315 0.47 +0.5 702,835 + DZA65_RS03315 0.50 -0.0 703,006 - DZA65_RS03315 0.64 -0.5 703,009 + DZA65_RS03315 0.64 -0.5 703,009 + DZA65_RS03315 0.64 +0.0 703,009 + DZA65_RS03315 0.64 -0.7 703,009 + DZA65_RS03315 0.64 +0.2 703,010 - DZA65_RS03315 0.65 -0.1 703,010 - DZA65_RS03315 0.65 -0.0 703,010 - DZA65_RS03315 0.65 +1.4 703,010 - DZA65_RS03315 0.65 +0.3 703,010 - DZA65_RS03315 0.65 -0.1 703,010 - DZA65_RS03315 0.65 -0.4 703,010 - DZA65_RS03315 0.65 -0.7 703,104 + DZA65_RS03315 0.72 +0.0 703,105 - DZA65_RS03315 0.72 -0.1 703,105 - DZA65_RS03315 0.72 -1.7 703,105 - DZA65_RS03315 0.72 -0.7 703,107 + DZA65_RS03315 0.72 -0.4 703,107 + DZA65_RS03315 0.72 +0.8 703,338 + +0.6 703,465 - -0.4 703,492 - +0.0 703,493 + +0.6 703,493 + -1.4 703,493 + -1.7 703,495 + -0.7 703,495 + +1.2 703,495 + -0.1 703,495 + -0.4 703,495 + +0.5 703,495 + +0.2 703,495 + +1.0 703,495 + +0.2 703,496 - +0.9 703,496 - +1.0 703,496 - -1.0 703,548 + -1.0 703,549 - -0.8 703,557 + +1.2 703,557 + -1.5 703,557 + +0.5 703,557 + -1.4 703,557 + +0.2 703,557 + -0.1 703,557 + +0.3 703,557 + +0.6 703,558 - -1.1 703,558 - +0.6 703,624 + DZA65_RS03320 0.11 +0.1 703,625 - DZA65_RS03320 0.11 -0.6 703,625 - DZA65_RS03320 0.11 +1.0 703,625 - DZA65_RS03320 0.11 +2.2 703,700 - DZA65_RS03320 0.22 +0.3 703,759 + DZA65_RS03320 0.30 +2.3 703,759 + DZA65_RS03320 0.30 -0.4 704,023 + DZA65_RS03320 0.66 +1.2 704,024 - DZA65_RS03320 0.66 +1.3 704,024 - DZA65_RS03320 0.66 -0.6 704,062 + DZA65_RS03320 0.71 -0.6 704,101 + DZA65_RS03320 0.77 +0.5 704,102 - DZA65_RS03320 0.77 +0.1 704,128 - DZA65_RS03320 0.81 -0.4 704,309 + +1.4 704,309 + -0.3 704,310 - -0.8 704,364 + -1.3 704,373 + -1.1 704,374 - -1.7 704,377 + -2.0 704,397 + +1.1 704,398 - +0.6 704,437 + +0.8 704,437 + +0.2 704,438 - -0.4 704,438 - +1.0 704,438 - -1.1 704,438 - +0.3 704,438 - -1.7 704,476 + +0.6 704,476 + +0.3 704,477 - -0.6 704,480 + -0.1 704,480 + +0.4 704,481 - -0.8 704,481 - -1.4 704,483 + +1.6 704,483 + +0.9 704,484 - -0.6 704,539 + DZA65_RS03325 0.12 +0.6 704,540 - DZA65_RS03325 0.12 -0.6 704,658 - DZA65_RS03325 0.22 +0.2 704,713 - DZA65_RS03325 0.26 +1.4 704,769 + DZA65_RS03325 0.31 +0.6 704,817 - DZA65_RS03325 0.34 -0.1 704,882 + DZA65_RS03325 0.40 +0.0 704,883 - DZA65_RS03325 0.40 -2.9 704,884 + DZA65_RS03325 0.40 +0.4 704,885 - DZA65_RS03325 0.40 +0.1 704,949 - DZA65_RS03325 0.45 +0.0 705,064 - DZA65_RS03325 0.54 -1.1 705,226 - DZA65_RS03325 0.67 +0.1
Or see this region's nucleotide sequence