Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00655

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00645 and DZA65_RS00650 are separated by 19 nucleotidesDZA65_RS00650 and DZA65_RS00655 are separated by 89 nucleotidesDZA65_RS00655 and DZA65_RS00660 overlap by 32 nucleotides DZA65_RS00645: DZA65_RS00645 - hypothetical protein, at 149,903 to 150,667 _RS00645 DZA65_RS00650: DZA65_RS00650 - hypothetical protein, at 150,687 to 151,449 _RS00650 DZA65_RS00655: DZA65_RS00655 - ABC transporter ATP-binding protein, at 151,539 to 152,240 _RS00655 DZA65_RS00660: DZA65_RS00660 - ABC transporter permease, at 152,209 to 153,453 _RS00660 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1 2at 151.105 kb on + strand, within DZA65_RS00650at 151.105 kb on + strand, within DZA65_RS00650at 151.162 kb on + strand, within DZA65_RS00650at 151.162 kb on + strand, within DZA65_RS00650at 151.162 kb on + strand, within DZA65_RS00650at 151.163 kb on - strand, within DZA65_RS00650at 151.163 kb on - strand, within DZA65_RS00650at 151.163 kb on - strand, within DZA65_RS00650at 151.163 kb on - strand, within DZA65_RS00650at 151.163 kb on - strand, within DZA65_RS00650at 151.163 kb on - strand, within DZA65_RS00650at 151.163 kb on - strand, within DZA65_RS00650at 151.163 kb on - strand, within DZA65_RS00650at 151.163 kb on - strand, within DZA65_RS00650at 151.206 kb on - strand, within DZA65_RS00650at 151.216 kb on + strand, within DZA65_RS00650at 151.216 kb on + strand, within DZA65_RS00650at 151.216 kb on + strand, within DZA65_RS00650at 151.217 kb on - strand, within DZA65_RS00650at 151.217 kb on - strand, within DZA65_RS00650at 151.217 kb on - strand, within DZA65_RS00650at 151.217 kb on - strand, within DZA65_RS00650at 151.217 kb on - strand, within DZA65_RS00650at 151.224 kb on + strand, within DZA65_RS00650at 151.249 kb on + strand, within DZA65_RS00650at 151.249 kb on + strand, within DZA65_RS00650at 151.249 kb on + strand, within DZA65_RS00650at 151.250 kb on - strand, within DZA65_RS00650at 151.250 kb on - strand, within DZA65_RS00650at 151.250 kb on - strand, within DZA65_RS00650at 151.250 kb on - strand, within DZA65_RS00650at 151.250 kb on - strand, within DZA65_RS00650at 151.250 kb on - strand, within DZA65_RS00650at 151.250 kb on - strand, within DZA65_RS00650at 151.270 kb on + strand, within DZA65_RS00650at 151.271 kb on - strand, within DZA65_RS00650at 151.271 kb on - strand, within DZA65_RS00650at 151.416 kb on - strandat 151.493 kb on + strandat 151.493 kb on + strandat 151.493 kb on + strandat 151.493 kb on + strandat 151.494 kb on - strandat 151.494 kb on - strandat 151.494 kb on - strandat 151.494 kb on - strandat 151.497 kb on + strandat 151.497 kb on + strandat 151.497 kb on + strandat 151.497 kb on + strandat 151.497 kb on + strandat 151.497 kb on + strandat 151.497 kb on + strandat 151.498 kb on - strandat 151.498 kb on - strandat 151.498 kb on - strandat 151.498 kb on - strandat 151.498 kb on - strandat 151.509 kb on - strandat 151.574 kb on - strandat 151.593 kb on + strandat 151.594 kb on - strandat 151.610 kb on + strand, within DZA65_RS00655at 151.610 kb on + strand, within DZA65_RS00655at 151.649 kb on + strand, within DZA65_RS00655at 151.691 kb on + strand, within DZA65_RS00655at 151.692 kb on - strand, within DZA65_RS00655at 151.698 kb on - strand, within DZA65_RS00655at 151.698 kb on - strand, within DZA65_RS00655at 151.698 kb on - strand, within DZA65_RS00655at 151.698 kb on - strand, within DZA65_RS00655at 151.806 kb on - strand, within DZA65_RS00655at 151.825 kb on + strand, within DZA65_RS00655at 151.825 kb on + strand, within DZA65_RS00655at 151.826 kb on - strand, within DZA65_RS00655at 151.891 kb on - strand, within DZA65_RS00655at 151.898 kb on + strand, within DZA65_RS00655at 151.898 kb on + strand, within DZA65_RS00655at 151.898 kb on + strand, within DZA65_RS00655at 151.898 kb on + strand, within DZA65_RS00655at 151.898 kb on + strand, within DZA65_RS00655at 151.899 kb on - strand, within DZA65_RS00655at 151.899 kb on - strand, within DZA65_RS00655at 151.899 kb on - strandat 151.900 kb on + strand, within DZA65_RS00655at 151.901 kb on - strand, within DZA65_RS00655at 151.901 kb on - strand, within DZA65_RS00655at 151.901 kb on - strand, within DZA65_RS00655at 152.073 kb on - strand, within DZA65_RS00655at 152.113 kb on + strand, within DZA65_RS00655at 152.113 kb on + strand, within DZA65_RS00655at 152.152 kb on + strand, within DZA65_RS00655at 152.257 kb on + strandat 152.258 kb on - strandat 152.339 kb on + strand, within DZA65_RS00660at 152.339 kb on + strand, within DZA65_RS00660at 152.339 kb on + strand, within DZA65_RS00660at 152.339 kb on + strand, within DZA65_RS00660at 152.339 kb on + strand, within DZA65_RS00660at 152.339 kb on + strand, within DZA65_RS00660at 152.340 kb on - strand, within DZA65_RS00660at 152.340 kb on - strand, within DZA65_RS00660at 152.340 kb on - strand, within DZA65_RS00660at 152.340 kb on - strand, within DZA65_RS00660at 152.340 kb on - strand, within DZA65_RS00660at 152.343 kb on + strand, within DZA65_RS00660at 152.343 kb on + strand, within DZA65_RS00660at 152.343 kb on + strand, within DZA65_RS00660at 152.343 kb on + strand, within DZA65_RS00660at 152.343 kb on + strand, within DZA65_RS00660at 152.343 kb on + strand, within DZA65_RS00660at 152.344 kb on - strand, within DZA65_RS00660at 152.344 kb on - strand, within DZA65_RS00660at 152.344 kb on - strand, within DZA65_RS00660at 152.344 kb on - strand, within DZA65_RS00660at 152.344 kb on - strand, within DZA65_RS00660at 152.344 kb on - strand, within DZA65_RS00660at 152.344 kb on - strand, within DZA65_RS00660at 152.410 kb on - strand, within DZA65_RS00660at 152.417 kb on + strand, within DZA65_RS00660at 152.418 kb on - strand, within DZA65_RS00660at 152.418 kb on - strand, within DZA65_RS00660at 152.418 kb on - strand, within DZA65_RS00660at 152.427 kb on + strand, within DZA65_RS00660at 152.427 kb on + strand, within DZA65_RS00660at 152.428 kb on - strand, within DZA65_RS00660at 152.452 kb on - strand, within DZA65_RS00660at 152.488 kb on + strand, within DZA65_RS00660at 152.539 kb on - strand, within DZA65_RS00660at 152.585 kb on + strand, within DZA65_RS00660at 152.585 kb on + strand, within DZA65_RS00660at 152.585 kb on + strand, within DZA65_RS00660at 152.585 kb on + strand, within DZA65_RS00660at 152.585 kb on + strand, within DZA65_RS00660at 152.585 kb on + strand, within DZA65_RS00660at 152.586 kb on - strand, within DZA65_RS00660at 152.586 kb on - strand, within DZA65_RS00660at 152.586 kb on - strand, within DZA65_RS00660at 152.586 kb on - strand, within DZA65_RS00660at 152.586 kb on - strand, within DZA65_RS00660at 152.586 kb on - strand, within DZA65_RS00660at 152.586 kb on - strand, within DZA65_RS00660at 152.586 kb on - strand, within DZA65_RS00660at 152.604 kb on + strand, within DZA65_RS00660at 152.604 kb on + strand, within DZA65_RS00660at 152.604 kb on + strand, within DZA65_RS00660at 152.604 kb on + strand, within DZA65_RS00660at 152.604 kb on + strand, within DZA65_RS00660at 152.605 kb on - strand, within DZA65_RS00660at 152.605 kb on - strand, within DZA65_RS00660at 152.605 kb on - strand, within DZA65_RS00660at 152.605 kb on - strand, within DZA65_RS00660at 152.616 kb on - strand, within DZA65_RS00660at 152.616 kb on - strand, within DZA65_RS00660at 152.623 kb on - strand, within DZA65_RS00660at 152.651 kb on + strand, within DZA65_RS00660at 152.651 kb on + strand, within DZA65_RS00660at 152.651 kb on + strand, within DZA65_RS00660at 152.652 kb on - strand, within DZA65_RS00660at 152.652 kb on - strand, within DZA65_RS00660at 152.652 kb on - strand, within DZA65_RS00660at 152.652 kb on - strand, within DZA65_RS00660at 152.683 kb on + strand, within DZA65_RS00660at 152.683 kb on + strand, within DZA65_RS00660at 152.683 kb on + strand, within DZA65_RS00660at 152.683 kb on + strand, within DZA65_RS00660at 152.684 kb on - strand, within DZA65_RS00660at 152.684 kb on - strand, within DZA65_RS00660at 152.748 kb on + strand, within DZA65_RS00660at 152.748 kb on + strand, within DZA65_RS00660at 152.749 kb on - strand, within DZA65_RS00660at 152.788 kb on + strand, within DZA65_RS00660at 152.789 kb on - strand, within DZA65_RS00660at 152.789 kb on - strand, within DZA65_RS00660at 152.876 kb on + strand, within DZA65_RS00660at 152.876 kb on + strand, within DZA65_RS00660at 152.921 kb on + strand, within DZA65_RS00660at 152.921 kb on + strand, within DZA65_RS00660at 152.921 kb on + strand, within DZA65_RS00660at 152.921 kb on + strand, within DZA65_RS00660at 152.922 kb on - strand, within DZA65_RS00660at 152.922 kb on - strand, within DZA65_RS00660at 152.922 kb on - strand, within DZA65_RS00660at 152.922 kb on - strand, within DZA65_RS00660at 152.922 kb on - strand, within DZA65_RS00660at 152.922 kb on - strand, within DZA65_RS00660at 152.922 kb on - strand, within DZA65_RS00660at 153.046 kb on - strand, within DZA65_RS00660at 153.046 kb on - strand, within DZA65_RS00660at 153.046 kb on - strand, within DZA65_RS00660at 153.098 kb on + strand, within DZA65_RS00660at 153.098 kb on + strand, within DZA65_RS00660at 153.098 kb on + strand, within DZA65_RS00660at 153.098 kb on + strand, within DZA65_RS00660at 153.098 kb on + strand, within DZA65_RS00660at 153.099 kb on - strand, within DZA65_RS00660at 153.099 kb on - strand, within DZA65_RS00660at 153.099 kb on - strand, within DZA65_RS00660at 153.099 kb on - strand, within DZA65_RS00660at 153.099 kb on - strandat 153.099 kb on - strand, within DZA65_RS00660at 153.099 kb on - strand, within DZA65_RS00660at 153.099 kb on - strand, within DZA65_RS00660at 153.099 kb on - strand, within DZA65_RS00660at 153.176 kb on + strand, within DZA65_RS00660at 153.176 kb on + strand, within DZA65_RS00660at 153.177 kb on - strand, within DZA65_RS00660at 153.177 kb on - strand, within DZA65_RS00660

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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151,105 + DZA65_RS00650 0.55 -0.8
151,105 + DZA65_RS00650 0.55 -1.4
151,162 + DZA65_RS00650 0.62 +1.2
151,162 + DZA65_RS00650 0.62 -0.2
151,162 + DZA65_RS00650 0.62 -0.3
151,163 - DZA65_RS00650 0.62 +1.1
151,163 - DZA65_RS00650 0.62 +0.6
151,163 - DZA65_RS00650 0.62 -2.0
151,163 - DZA65_RS00650 0.62 -0.8
151,163 - DZA65_RS00650 0.62 -0.9
151,163 - DZA65_RS00650 0.62 +1.4
151,163 - DZA65_RS00650 0.62 -0.2
151,163 - DZA65_RS00650 0.62 -1.2
151,163 - DZA65_RS00650 0.62 -0.2
151,206 - DZA65_RS00650 0.68 -0.8
151,216 + DZA65_RS00650 0.69 -0.5
151,216 + DZA65_RS00650 0.69 -0.2
151,216 + DZA65_RS00650 0.69 -0.2
151,217 - DZA65_RS00650 0.69 -1.0
151,217 - DZA65_RS00650 0.69 -0.9
151,217 - DZA65_RS00650 0.69 +1.2
151,217 - DZA65_RS00650 0.69 -0.4
151,217 - DZA65_RS00650 0.69 -0.4
151,224 + DZA65_RS00650 0.70 +2.4
151,249 + DZA65_RS00650 0.74 -2.0
151,249 + DZA65_RS00650 0.74 -0.3
151,249 + DZA65_RS00650 0.74 -1.0
151,250 - DZA65_RS00650 0.74 -0.2
151,250 - DZA65_RS00650 0.74 +0.4
151,250 - DZA65_RS00650 0.74 -2.2
151,250 - DZA65_RS00650 0.74 -0.0
151,250 - DZA65_RS00650 0.74 -0.2
151,250 - DZA65_RS00650 0.74 -1.2
151,250 - DZA65_RS00650 0.74 +0.4
151,270 + DZA65_RS00650 0.76 +0.2
151,271 - DZA65_RS00650 0.77 +1.6
151,271 - DZA65_RS00650 0.77 -0.2
151,416 - -1.6
151,493 + +2.2
151,493 + +0.5
151,493 + +0.5
151,493 + -0.8
151,494 - -0.0
151,494 - +0.4
151,494 - -0.5
151,494 - -0.2
151,497 + -1.2
151,497 + +1.8
151,497 + +1.5
151,497 + -0.5
151,497 + -0.5
151,497 + -1.5
151,497 + -0.5
151,498 - +0.8
151,498 - +0.5
151,498 - +1.8
151,498 - +0.2
151,498 - +2.2
151,509 - +0.1
151,574 - -0.5
151,593 + +0.1
151,594 - +0.6
151,610 + DZA65_RS00655 0.10 -1.2
151,610 + DZA65_RS00655 0.10 -0.5
151,649 + DZA65_RS00655 0.16 -1.8
151,691 + DZA65_RS00655 0.22 +0.2
151,692 - DZA65_RS00655 0.22 +0.8
151,698 - DZA65_RS00655 0.23 -1.0
151,698 - DZA65_RS00655 0.23 +0.6
151,698 - DZA65_RS00655 0.23 +0.8
151,698 - DZA65_RS00655 0.23 +0.7
151,806 - DZA65_RS00655 0.38 +0.0
151,825 + DZA65_RS00655 0.41 -1.0
151,825 + DZA65_RS00655 0.41 -0.2
151,826 - DZA65_RS00655 0.41 -0.6
151,891 - DZA65_RS00655 0.50 +1.4
151,898 + DZA65_RS00655 0.51 -1.2
151,898 + DZA65_RS00655 0.51 -1.0
151,898 + DZA65_RS00655 0.51 -0.1
151,898 + DZA65_RS00655 0.51 -1.5
151,898 + DZA65_RS00655 0.51 +0.4
151,899 - DZA65_RS00655 0.51 -0.8
151,899 - DZA65_RS00655 0.51 -1.4
151,899 - -0.2
151,900 + DZA65_RS00655 0.51 -1.8
151,901 - DZA65_RS00655 0.52 -0.2
151,901 - DZA65_RS00655 0.52 -0.8
151,901 - DZA65_RS00655 0.52 +0.8
152,073 - DZA65_RS00655 0.76 -0.8
152,113 + DZA65_RS00655 0.82 -1.0
152,113 + DZA65_RS00655 0.82 +1.6
152,152 + DZA65_RS00655 0.87 -2.4
152,257 + +0.8
152,258 - -1.2
152,339 + DZA65_RS00660 0.10 +0.8
152,339 + DZA65_RS00660 0.10 +0.5
152,339 + DZA65_RS00660 0.10 +0.2
152,339 + DZA65_RS00660 0.10 -1.3
152,339 + DZA65_RS00660 0.10 +0.2
152,339 + DZA65_RS00660 0.10 -0.0
152,340 - DZA65_RS00660 0.11 +2.1
152,340 - DZA65_RS00660 0.11 -0.7
152,340 - DZA65_RS00660 0.11 +0.2
152,340 - DZA65_RS00660 0.11 -0.2
152,340 - DZA65_RS00660 0.11 -1.5
152,343 + DZA65_RS00660 0.11 -0.2
152,343 + DZA65_RS00660 0.11 +0.2
152,343 + DZA65_RS00660 0.11 -0.6
152,343 + DZA65_RS00660 0.11 +0.2
152,343 + DZA65_RS00660 0.11 +0.8
152,343 + DZA65_RS00660 0.11 +0.5
152,344 - DZA65_RS00660 0.11 -0.5
152,344 - DZA65_RS00660 0.11 -0.8
152,344 - DZA65_RS00660 0.11 +0.1
152,344 - DZA65_RS00660 0.11 +1.7
152,344 - DZA65_RS00660 0.11 -0.4
152,344 - DZA65_RS00660 0.11 -1.5
152,344 - DZA65_RS00660 0.11 -0.5
152,410 - DZA65_RS00660 0.16 -0.5
152,417 + DZA65_RS00660 0.17 -0.2
152,418 - DZA65_RS00660 0.17 -0.4
152,418 - DZA65_RS00660 0.17 -0.1
152,418 - DZA65_RS00660 0.17 -0.0
152,427 + DZA65_RS00660 0.18 -0.2
152,427 + DZA65_RS00660 0.18 +1.7
152,428 - DZA65_RS00660 0.18 -0.5
152,452 - DZA65_RS00660 0.20 -0.5
152,488 + DZA65_RS00660 0.22 +0.4
152,539 - DZA65_RS00660 0.27 -0.5
152,585 + DZA65_RS00660 0.30 +0.3
152,585 + DZA65_RS00660 0.30 +1.4
152,585 + DZA65_RS00660 0.30 -1.6
152,585 + DZA65_RS00660 0.30 -0.8
152,585 + DZA65_RS00660 0.30 -0.1
152,585 + DZA65_RS00660 0.30 +2.0
152,586 - DZA65_RS00660 0.30 +0.8
152,586 - DZA65_RS00660 0.30 +1.2
152,586 - DZA65_RS00660 0.30 +0.2
152,586 - DZA65_RS00660 0.30 -0.2
152,586 - DZA65_RS00660 0.30 +2.4
152,586 - DZA65_RS00660 0.30 +0.4
152,586 - DZA65_RS00660 0.30 +0.2
152,586 - DZA65_RS00660 0.30 +0.7
152,604 + DZA65_RS00660 0.32 -0.8
152,604 + DZA65_RS00660 0.32 +1.2
152,604 + DZA65_RS00660 0.32 -0.5
152,604 + DZA65_RS00660 0.32 -0.1
152,604 + DZA65_RS00660 0.32 -1.0
152,605 - DZA65_RS00660 0.32 -0.0
152,605 - DZA65_RS00660 0.32 -0.4
152,605 - DZA65_RS00660 0.32 -1.2
152,605 - DZA65_RS00660 0.32 +1.2
152,616 - DZA65_RS00660 0.33 +0.2
152,616 - DZA65_RS00660 0.33 -0.2
152,623 - DZA65_RS00660 0.33 -1.8
152,651 + DZA65_RS00660 0.36 -1.0
152,651 + DZA65_RS00660 0.36 +1.1
152,651 + DZA65_RS00660 0.36 +0.5
152,652 - DZA65_RS00660 0.36 -1.2
152,652 - DZA65_RS00660 0.36 +1.4
152,652 - DZA65_RS00660 0.36 +0.5
152,652 - DZA65_RS00660 0.36 +1.1
152,683 + DZA65_RS00660 0.38 +1.9
152,683 + DZA65_RS00660 0.38 +0.1
152,683 + DZA65_RS00660 0.38 -0.8
152,683 + DZA65_RS00660 0.38 +0.8
152,684 - DZA65_RS00660 0.38 +0.1
152,684 - DZA65_RS00660 0.38 +1.1
152,748 + DZA65_RS00660 0.43 +0.4
152,748 + DZA65_RS00660 0.43 -0.0
152,749 - DZA65_RS00660 0.43 +0.1
152,788 + DZA65_RS00660 0.47 +0.1
152,789 - DZA65_RS00660 0.47 -2.0
152,789 - DZA65_RS00660 0.47 -0.8
152,876 + DZA65_RS00660 0.54 -0.6
152,876 + DZA65_RS00660 0.54 -2.3
152,921 + DZA65_RS00660 0.57 -0.6
152,921 + DZA65_RS00660 0.57 -0.4
152,921 + DZA65_RS00660 0.57 -1.0
152,921 + DZA65_RS00660 0.57 -0.6
152,922 - DZA65_RS00660 0.57 +1.6
152,922 - DZA65_RS00660 0.57 +0.3
152,922 - DZA65_RS00660 0.57 +0.4
152,922 - DZA65_RS00660 0.57 +0.7
152,922 - DZA65_RS00660 0.57 +1.8
152,922 - DZA65_RS00660 0.57 +0.6
152,922 - DZA65_RS00660 0.57 -0.6
153,046 - DZA65_RS00660 0.67 -0.5
153,046 - DZA65_RS00660 0.67 +1.0
153,046 - DZA65_RS00660 0.67 +0.6
153,098 + DZA65_RS00660 0.71 +1.2
153,098 + DZA65_RS00660 0.71 +0.6
153,098 + DZA65_RS00660 0.71 -0.1
153,098 + DZA65_RS00660 0.71 -0.9
153,098 + DZA65_RS00660 0.71 -0.8
153,099 - DZA65_RS00660 0.71 +0.2
153,099 - DZA65_RS00660 0.71 -2.0
153,099 - DZA65_RS00660 0.71 -0.5
153,099 - DZA65_RS00660 0.71 -1.0
153,099 - -0.8
153,099 - DZA65_RS00660 0.71 +0.0
153,099 - DZA65_RS00660 0.71 +0.5
153,099 - DZA65_RS00660 0.71 -0.2
153,099 - DZA65_RS00660 0.71 +0.8
153,176 + DZA65_RS00660 0.78 -2.0
153,176 + DZA65_RS00660 0.78 -0.3
153,177 - DZA65_RS00660 0.78 -2.0
153,177 - DZA65_RS00660 0.78 -0.5

Or see this region's nucleotide sequence