Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00155 and DZA65_RS00160 overlap by 4 nucleotides DZA65_RS00160 and DZA65_RS00165 are separated by 29 nucleotides
DZA65_RS00155: DZA65_RS00155 - alkylhydroperoxidase domain protein, at 34,711 to 35,829
_RS00155
DZA65_RS00160: DZA65_RS00160 - putative FMN-dependent luciferase-like monooxygenase, at 35,826 to 36,875
_RS00160
DZA65_RS00165: DZA65_RS00165 - ABC transporter ATP-binding protein, at 36,905 to 38,557
_RS00165
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 34.963 kb on + strand, within DZA65_RS00155 at 34.963 kb on + strand, within DZA65_RS00155 at 35.021 kb on + strand, within DZA65_RS00155 at 35.021 kb on + strand, within DZA65_RS00155 at 35.021 kb on + strand, within DZA65_RS00155 at 35.022 kb on - strand, within DZA65_RS00155 at 35.022 kb on - strand, within DZA65_RS00155 at 35.022 kb on - strand, within DZA65_RS00155 at 35.022 kb on - strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.026 kb on - strand, within DZA65_RS00155 at 35.026 kb on - strand, within DZA65_RS00155 at 35.094 kb on + strand, within DZA65_RS00155 at 35.096 kb on + strand, within DZA65_RS00155 at 35.096 kb on + strand, within DZA65_RS00155 at 35.096 kb on + strand, within DZA65_RS00155 at 35.096 kb on + strand, within DZA65_RS00155 at 35.097 kb on - strand, within DZA65_RS00155 at 35.097 kb on - strand, within DZA65_RS00155 at 35.121 kb on + strand, within DZA65_RS00155 at 35.121 kb on + strand, within DZA65_RS00155 at 35.122 kb on - strand, within DZA65_RS00155 at 35.122 kb on - strand, within DZA65_RS00155 at 35.122 kb on - strand, within DZA65_RS00155 at 35.122 kb on - strand, within DZA65_RS00155 at 35.165 kb on + strand, within DZA65_RS00155 at 35.165 kb on + strand, within DZA65_RS00155 at 35.166 kb on - strand, within DZA65_RS00155 at 35.166 kb on - strand, within DZA65_RS00155 at 35.432 kb on - strand, within DZA65_RS00155 at 35.432 kb on - strand, within DZA65_RS00155 at 35.432 kb on - strand, within DZA65_RS00155 at 35.451 kb on + strand, within DZA65_RS00155 at 35.677 kb on + strand, within DZA65_RS00155 at 35.704 kb on + strand, within DZA65_RS00155 at 35.704 kb on + strand, within DZA65_RS00155 at 35.704 kb on + strand, within DZA65_RS00155 at 35.704 kb on + strand, within DZA65_RS00155 at 35.704 kb on + strand, within DZA65_RS00155 at 35.705 kb on - strand, within DZA65_RS00155 at 35.705 kb on - strand, within DZA65_RS00155 at 35.705 kb on - strand, within DZA65_RS00155 at 35.705 kb on - strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand at 35.727 kb on + strand at 35.728 kb on - strand at 35.728 kb on - strand at 35.728 kb on - strand at 35.799 kb on + strand at 35.799 kb on + strand at 35.799 kb on + strand at 35.799 kb on + strand at 35.800 kb on - strand at 35.800 kb on - strand at 35.800 kb on - strand at 35.803 kb on + strand at 35.803 kb on + strand at 35.803 kb on + strand at 35.804 kb on - strand at 35.804 kb on - strand at 35.804 kb on - strand at 35.804 kb on - strand at 35.861 kb on + strand at 35.862 kb on - strand at 35.862 kb on - strand at 35.939 kb on + strand, within DZA65_RS00160 at 35.939 kb on + strand, within DZA65_RS00160 at 35.939 kb on + strand, within DZA65_RS00160 at 35.939 kb on + strand, within DZA65_RS00160 at 36.241 kb on + strand, within DZA65_RS00160 at 36.242 kb on - strand, within DZA65_RS00160 at 36.278 kb on + strand, within DZA65_RS00160 at 36.278 kb on + strand, within DZA65_RS00160 at 36.585 kb on + strand, within DZA65_RS00160 at 36.586 kb on - strand, within DZA65_RS00160 at 36.586 kb on - strand, within DZA65_RS00160 at 36.594 kb on + strand, within DZA65_RS00160 at 36.594 kb on + strand, within DZA65_RS00160 at 36.594 kb on + strand, within DZA65_RS00160 at 36.594 kb on + strand, within DZA65_RS00160 at 36.595 kb on - strand, within DZA65_RS00160 at 36.595 kb on - strand, within DZA65_RS00160 at 36.879 kb on + strand at 36.879 kb on + strand at 36.879 kb on + strand at 36.879 kb on + strand at 36.880 kb on - strand at 36.880 kb on - strand at 36.880 kb on - strand at 36.906 kb on + strand at 36.906 kb on + strand at 36.907 kb on - strand at 36.954 kb on + strand at 36.955 kb on - strand at 36.955 kb on - strand at 36.986 kb on + strand at 37.017 kb on + strand at 37.017 kb on + strand at 37.017 kb on + strand at 37.017 kb on + strand at 37.017 kb on + strand at 37.018 kb on - strand at 37.018 kb on - strand at 37.018 kb on - strand at 37.018 kb on - strand at 37.072 kb on + strand, within DZA65_RS00165 at 37.073 kb on - strand, within DZA65_RS00165 at 37.073 kb on - strand, within DZA65_RS00165 at 37.080 kb on + strand, within DZA65_RS00165 at 37.080 kb on + strand, within DZA65_RS00165 at 37.080 kb on + strand, within DZA65_RS00165 at 37.080 kb on + strand, within DZA65_RS00165 at 37.080 kb on + strand, within DZA65_RS00165 at 37.080 kb on + strand, within DZA65_RS00165 at 37.080 kb on + strand, within DZA65_RS00165 at 37.080 kb on + strand, within DZA65_RS00165 at 37.081 kb on - strand, within DZA65_RS00165 at 37.081 kb on - strand, within DZA65_RS00165 at 37.081 kb on - strand, within DZA65_RS00165 at 37.081 kb on - strand, within DZA65_RS00165 at 37.081 kb on - strand, within DZA65_RS00165 at 37.081 kb on - strand, within DZA65_RS00165 at 37.081 kb on - strand, within DZA65_RS00165 at 37.081 kb on - strand, within DZA65_RS00165 at 37.081 kb on - strand, within DZA65_RS00165 at 37.081 kb on - strand, within DZA65_RS00165 at 37.124 kb on + strand, within DZA65_RS00165 at 37.124 kb on + strand, within DZA65_RS00165 at 37.124 kb on + strand, within DZA65_RS00165 at 37.124 kb on + strand, within DZA65_RS00165 at 37.124 kb on + strand, within DZA65_RS00165 at 37.125 kb on - strand, within DZA65_RS00165 at 37.125 kb on - strand, within DZA65_RS00165 at 37.125 kb on - strand, within DZA65_RS00165 at 37.125 kb on - strand, within DZA65_RS00165 at 37.292 kb on + strand, within DZA65_RS00165 at 37.292 kb on + strand, within DZA65_RS00165 at 37.292 kb on + strand, within DZA65_RS00165 at 37.292 kb on + strand, within DZA65_RS00165 at 37.293 kb on - strand, within DZA65_RS00165 at 37.329 kb on + strand, within DZA65_RS00165 at 37.337 kb on - strand, within DZA65_RS00165 at 37.590 kb on - strand, within DZA65_RS00165 at 37.756 kb on + strand, within DZA65_RS00165 at 37.776 kb on + strand, within DZA65_RS00165 at 37.776 kb on + strand, within DZA65_RS00165 at 37.828 kb on + strand, within DZA65_RS00165 at 37.828 kb on + strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.829 kb on - strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.830 kb on + strand, within DZA65_RS00165 at 37.831 kb on - strand, within DZA65_RS00165 at 37.831 kb on - strand, within DZA65_RS00165 at 37.831 kb on - strand, within DZA65_RS00165 at 37.831 kb on - strand, within DZA65_RS00165 at 37.831 kb on - strand, within DZA65_RS00165
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 34,963 + DZA65_RS00155 0.23 +0.2 34,963 + DZA65_RS00155 0.23 -0.6 35,021 + DZA65_RS00155 0.28 -0.1 35,021 + DZA65_RS00155 0.28 +0.6 35,021 + DZA65_RS00155 0.28 +0.7 35,022 - DZA65_RS00155 0.28 -1.2 35,022 - DZA65_RS00155 0.28 -1.2 35,022 - DZA65_RS00155 0.28 +0.4 35,022 - DZA65_RS00155 0.28 +2.4 35,025 + DZA65_RS00155 0.28 -2.0 35,025 + DZA65_RS00155 0.28 -0.5 35,025 + DZA65_RS00155 0.28 +1.0 35,025 + DZA65_RS00155 0.28 +0.8 35,025 + DZA65_RS00155 0.28 +0.2 35,025 + DZA65_RS00155 0.28 +0.6 35,026 - DZA65_RS00155 0.28 +0.3 35,026 - DZA65_RS00155 0.28 +0.1 35,094 + DZA65_RS00155 0.34 -1.0 35,096 + DZA65_RS00155 0.34 +0.7 35,096 + DZA65_RS00155 0.34 +0.8 35,096 + DZA65_RS00155 0.34 -0.5 35,096 + DZA65_RS00155 0.34 +0.1 35,097 - DZA65_RS00155 0.34 +0.6 35,097 - DZA65_RS00155 0.34 +0.2 35,121 + DZA65_RS00155 0.37 -0.4 35,121 + DZA65_RS00155 0.37 -1.9 35,122 - DZA65_RS00155 0.37 -0.7 35,122 - DZA65_RS00155 0.37 +0.8 35,122 - DZA65_RS00155 0.37 +0.1 35,122 - DZA65_RS00155 0.37 +0.7 35,165 + DZA65_RS00155 0.41 +0.8 35,165 + DZA65_RS00155 0.41 +1.4 35,166 - DZA65_RS00155 0.41 -0.4 35,166 - DZA65_RS00155 0.41 +0.8 35,432 - DZA65_RS00155 0.64 +1.0 35,432 - DZA65_RS00155 0.64 -2.6 35,432 - DZA65_RS00155 0.64 -2.8 35,451 + DZA65_RS00155 0.66 -0.4 35,677 + DZA65_RS00155 0.86 -0.8 35,704 + DZA65_RS00155 0.89 -0.2 35,704 + DZA65_RS00155 0.89 +0.5 35,704 + DZA65_RS00155 0.89 -0.1 35,704 + DZA65_RS00155 0.89 -1.6 35,704 + DZA65_RS00155 0.89 -1.0 35,705 - DZA65_RS00155 0.89 -1.3 35,705 - DZA65_RS00155 0.89 -1.2 35,705 - DZA65_RS00155 0.89 -1.2 35,705 - DZA65_RS00155 0.89 +0.5 35,714 + DZA65_RS00155 0.90 -2.0 35,714 + DZA65_RS00155 0.90 -1.5 35,714 + DZA65_RS00155 0.90 -0.1 35,714 + DZA65_RS00155 0.90 -3.1 35,714 + DZA65_RS00155 0.90 +0.2 35,714 + DZA65_RS00155 0.90 -0.1 35,714 + DZA65_RS00155 0.90 -0.1 35,714 + DZA65_RS00155 0.90 +0.6 35,714 + DZA65_RS00155 0.90 -0.2 35,714 + DZA65_RS00155 0.90 +0.4 35,714 + DZA65_RS00155 0.90 +1.2 35,714 + DZA65_RS00155 0.90 -0.9 35,714 + DZA65_RS00155 0.90 +3.6 35,714 + DZA65_RS00155 0.90 +0.1 35,714 + DZA65_RS00155 0.90 +1.3 35,715 - DZA65_RS00155 0.90 -0.8 35,715 - DZA65_RS00155 0.90 +2.0 35,715 - DZA65_RS00155 0.90 +0.5 35,715 - DZA65_RS00155 0.90 -2.7 35,715 - DZA65_RS00155 0.90 +1.5 35,715 - DZA65_RS00155 0.90 +0.6 35,715 - +0.8 35,727 + -0.4 35,728 - +0.1 35,728 - +0.6 35,728 - +0.1 35,799 + +0.8 35,799 + -1.0 35,799 + +0.8 35,799 + +0.7 35,800 - +0.8 35,800 - -2.2 35,800 - -1.0 35,803 + -0.3 35,803 + +0.4 35,803 + -0.4 35,804 - +1.4 35,804 - +1.4 35,804 - -0.8 35,804 - +0.5 35,861 + -0.4 35,862 - -0.8 35,862 - -1.2 35,939 + DZA65_RS00160 0.11 +0.8 35,939 + DZA65_RS00160 0.11 -0.2 35,939 + DZA65_RS00160 0.11 +0.5 35,939 + DZA65_RS00160 0.11 -1.5 36,241 + DZA65_RS00160 0.40 +1.1 36,242 - DZA65_RS00160 0.40 +0.7 36,278 + DZA65_RS00160 0.43 +1.8 36,278 + DZA65_RS00160 0.43 +1.0 36,585 + DZA65_RS00160 0.72 +1.0 36,586 - DZA65_RS00160 0.72 +1.2 36,586 - DZA65_RS00160 0.72 -0.4 36,594 + DZA65_RS00160 0.73 -2.0 36,594 + DZA65_RS00160 0.73 -1.2 36,594 + DZA65_RS00160 0.73 +1.2 36,594 + DZA65_RS00160 0.73 +1.2 36,595 - DZA65_RS00160 0.73 -2.3 36,595 - DZA65_RS00160 0.73 -0.1 36,879 + -0.4 36,879 + -0.2 36,879 + -1.7 36,879 + +0.3 36,880 - -0.0 36,880 - +0.6 36,880 - +1.8 36,906 + -0.1 36,906 + +0.1 36,907 - -2.2 36,954 + -0.9 36,955 - -0.0 36,955 - -0.4 36,986 + +0.4 37,017 + -0.9 37,017 + +0.5 37,017 + -1.5 37,017 + -1.4 37,017 + -0.4 37,018 - -0.8 37,018 - +0.2 37,018 - +0.8 37,018 - +0.2 37,072 + DZA65_RS00165 0.10 +0.4 37,073 - DZA65_RS00165 0.10 -0.2 37,073 - DZA65_RS00165 0.10 +0.5 37,080 + DZA65_RS00165 0.11 -0.4 37,080 + DZA65_RS00165 0.11 -0.0 37,080 + DZA65_RS00165 0.11 -2.6 37,080 + DZA65_RS00165 0.11 -0.4 37,080 + DZA65_RS00165 0.11 -0.3 37,080 + DZA65_RS00165 0.11 -0.4 37,080 + DZA65_RS00165 0.11 -1.6 37,080 + DZA65_RS00165 0.11 +0.8 37,081 - DZA65_RS00165 0.11 -1.1 37,081 - DZA65_RS00165 0.11 +0.5 37,081 - DZA65_RS00165 0.11 +1.6 37,081 - DZA65_RS00165 0.11 -0.8 37,081 - DZA65_RS00165 0.11 -1.3 37,081 - DZA65_RS00165 0.11 -0.8 37,081 - DZA65_RS00165 0.11 -0.8 37,081 - DZA65_RS00165 0.11 -0.1 37,081 - DZA65_RS00165 0.11 +1.4 37,081 - DZA65_RS00165 0.11 +0.1 37,124 + DZA65_RS00165 0.13 +0.1 37,124 + DZA65_RS00165 0.13 -1.2 37,124 + DZA65_RS00165 0.13 +1.2 37,124 + DZA65_RS00165 0.13 -0.3 37,124 + DZA65_RS00165 0.13 +0.0 37,125 - DZA65_RS00165 0.13 -0.3 37,125 - DZA65_RS00165 0.13 -0.2 37,125 - DZA65_RS00165 0.13 +0.5 37,125 - DZA65_RS00165 0.13 +1.8 37,292 + DZA65_RS00165 0.23 -0.0 37,292 + DZA65_RS00165 0.23 -0.3 37,292 + DZA65_RS00165 0.23 -0.8 37,292 + DZA65_RS00165 0.23 -0.3 37,293 - DZA65_RS00165 0.23 -0.5 37,329 + DZA65_RS00165 0.26 -0.2 37,337 - DZA65_RS00165 0.26 +0.1 37,590 - DZA65_RS00165 0.41 -0.3 37,756 + DZA65_RS00165 0.51 -0.2 37,776 + DZA65_RS00165 0.53 -1.2 37,776 + DZA65_RS00165 0.53 -0.2 37,828 + DZA65_RS00165 0.56 -0.5 37,828 + DZA65_RS00165 0.56 +0.2 37,829 - DZA65_RS00165 0.56 -1.6 37,829 - DZA65_RS00165 0.56 +1.2 37,829 - DZA65_RS00165 0.56 -0.8 37,829 - DZA65_RS00165 0.56 +0.6 37,829 - DZA65_RS00165 0.56 -1.8 37,829 - DZA65_RS00165 0.56 +1.0 37,829 - DZA65_RS00165 0.56 -0.4 37,829 - DZA65_RS00165 0.56 +0.1 37,829 - DZA65_RS00165 0.56 +0.7 37,829 - DZA65_RS00165 0.56 +1.1 37,829 - DZA65_RS00165 0.56 -0.2 37,830 + DZA65_RS00165 0.56 +2.0 37,830 + DZA65_RS00165 0.56 -1.2 37,830 + DZA65_RS00165 0.56 +0.4 37,830 + DZA65_RS00165 0.56 -1.0 37,830 + DZA65_RS00165 0.56 -2.3 37,830 + DZA65_RS00165 0.56 +2.6 37,830 + DZA65_RS00165 0.56 -0.5 37,830 + DZA65_RS00165 0.56 -0.2 37,830 + DZA65_RS00165 0.56 -1.0 37,830 + DZA65_RS00165 0.56 -0.3 37,830 + DZA65_RS00165 0.56 -0.1 37,831 - DZA65_RS00165 0.56 +1.2 37,831 - DZA65_RS00165 0.56 -0.0 37,831 - DZA65_RS00165 0.56 +0.7 37,831 - DZA65_RS00165 0.56 -0.3 37,831 - DZA65_RS00165 0.56 +0.7
Or see this region's nucleotide sequence