Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00135 and DZA65_RS00140 are separated by 86 nucleotides DZA65_RS00140 and DZA65_RS00145 are separated by 146 nucleotides DZA65_RS00145 and DZA65_RS00150 are separated by 140 nucleotides
DZA65_RS00135: DZA65_RS00135 - GNAT family N-acetyltransferase, at 32,075 to 32,542
_RS00135
DZA65_RS00140: DZA65_RS00140 - MarR family transcriptional regulator, at 32,629 to 33,072
_RS00140
DZA65_RS00145: DZA65_RS00145 - DUF3861 domain-containing protein, at 33,219 to 33,509
_RS00145
DZA65_RS00150: DZA65_RS00150 - glucokinase, at 33,650 to 34,618
_RS00150
Position (kb) 33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 32.237 kb on + strand, within DZA65_RS00135 at 32.237 kb on + strand, within DZA65_RS00135 at 32.237 kb on + strand, within DZA65_RS00135 at 32.237 kb on + strand, within DZA65_RS00135 at 32.237 kb on + strand, within DZA65_RS00135 at 32.237 kb on + strand, within DZA65_RS00135 at 32.237 kb on + strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.238 kb on - strand, within DZA65_RS00135 at 32.310 kb on + strand, within DZA65_RS00135 at 32.310 kb on + strand, within DZA65_RS00135 at 32.310 kb on + strand, within DZA65_RS00135 at 32.310 kb on + strand, within DZA65_RS00135 at 32.310 kb on + strand, within DZA65_RS00135 at 32.310 kb on + strand, within DZA65_RS00135 at 32.310 kb on + strand, within DZA65_RS00135 at 32.310 kb on + strand, within DZA65_RS00135 at 32.311 kb on - strand, within DZA65_RS00135 at 32.311 kb on - strand, within DZA65_RS00135 at 32.311 kb on - strand at 32.311 kb on - strand, within DZA65_RS00135 at 32.311 kb on - strand, within DZA65_RS00135 at 32.317 kb on - strand, within DZA65_RS00135 at 32.317 kb on - strand, within DZA65_RS00135 at 32.317 kb on - strand, within DZA65_RS00135 at 32.317 kb on - strand, within DZA65_RS00135 at 32.370 kb on + strand, within DZA65_RS00135 at 32.371 kb on - strand, within DZA65_RS00135 at 32.419 kb on + strand, within DZA65_RS00135 at 32.435 kb on + strand, within DZA65_RS00135 at 32.474 kb on + strand, within DZA65_RS00135 at 32.475 kb on - strand, within DZA65_RS00135 at 32.504 kb on + strand at 32.504 kb on + strand at 32.504 kb on + strand at 32.505 kb on - strand at 32.505 kb on - strand at 32.563 kb on - strand at 32.572 kb on + strand at 32.572 kb on + strand at 32.593 kb on - strand at 32.643 kb on + strand at 32.643 kb on + strand at 32.643 kb on + strand at 32.644 kb on - strand at 32.644 kb on - strand at 32.644 kb on - strand at 32.644 kb on - strand at 32.644 kb on - strand at 32.671 kb on + strand at 32.671 kb on + strand at 32.672 kb on - strand at 32.672 kb on - strand at 32.672 kb on - strand at 33.003 kb on + strand, within DZA65_RS00140 at 33.003 kb on + strand, within DZA65_RS00140 at 33.003 kb on + strand, within DZA65_RS00140 at 33.004 kb on - strand, within DZA65_RS00140 at 33.004 kb on - strand, within DZA65_RS00140 at 33.004 kb on - strand, within DZA65_RS00140 at 33.004 kb on - strand, within DZA65_RS00140 at 33.012 kb on + strand, within DZA65_RS00140 at 33.012 kb on + strand, within DZA65_RS00140 at 33.012 kb on + strand, within DZA65_RS00140 at 33.012 kb on + strand, within DZA65_RS00140 at 33.013 kb on - strand, within DZA65_RS00140 at 33.013 kb on - strand, within DZA65_RS00140 at 33.013 kb on - strand, within DZA65_RS00140 at 33.013 kb on - strand, within DZA65_RS00140 at 33.013 kb on - strand at 33.015 kb on + strand, within DZA65_RS00140 at 33.015 kb on + strand, within DZA65_RS00140 at 33.015 kb on + strand, within DZA65_RS00140 at 33.015 kb on + strand, within DZA65_RS00140 at 33.016 kb on - strand, within DZA65_RS00140 at 33.016 kb on - strand, within DZA65_RS00140 at 33.016 kb on - strand, within DZA65_RS00140 at 33.074 kb on - strand at 33.104 kb on - strand at 33.106 kb on - strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.161 kb on + strand at 33.162 kb on - strand at 33.162 kb on - strand at 33.162 kb on - strand at 33.162 kb on - strand at 33.162 kb on - strand at 33.162 kb on - strand at 33.162 kb on - strand at 33.162 kb on - strand at 33.162 kb on - strand at 33.162 kb on - strand at 33.162 kb on - strand at 33.180 kb on + strand at 33.180 kb on + strand at 33.180 kb on + strand at 33.180 kb on + strand at 33.180 kb on + strand at 33.180 kb on + strand at 33.181 kb on - strand at 33.181 kb on - strand at 33.181 kb on - strand at 33.181 kb on - strand at 33.181 kb on - strand at 33.181 kb on - strand at 33.181 kb on - strand at 33.181 kb on - strand at 33.181 kb on - strand at 33.181 kb on - strand at 33.213 kb on - strand at 33.218 kb on + strand at 33.218 kb on + strand at 33.218 kb on + strand at 33.218 kb on + strand at 33.218 kb on + strand at 33.218 kb on + strand at 33.219 kb on - strand at 33.219 kb on - strand at 33.219 kb on - strand at 33.219 kb on - strand at 33.219 kb on - strand at 33.219 kb on - strand at 33.226 kb on - strand at 33.236 kb on + strand at 33.236 kb on + strand at 33.236 kb on + strand at 33.320 kb on + strand, within DZA65_RS00145 at 33.320 kb on + strand, within DZA65_RS00145 at 33.320 kb on + strand, within DZA65_RS00145 at 33.332 kb on + strand, within DZA65_RS00145 at 33.476 kb on + strand, within DZA65_RS00145 at 33.476 kb on + strand, within DZA65_RS00145 at 33.476 kb on + strand, within DZA65_RS00145 at 33.476 kb on + strand, within DZA65_RS00145 at 33.476 kb on + strand, within DZA65_RS00145 at 33.476 kb on + strand, within DZA65_RS00145 at 33.477 kb on - strand, within DZA65_RS00145 at 33.477 kb on - strand, within DZA65_RS00145 at 33.477 kb on - strand, within DZA65_RS00145 at 33.477 kb on - strand, within DZA65_RS00145 at 33.477 kb on - strand, within DZA65_RS00145 at 33.477 kb on - strand, within DZA65_RS00145 at 33.477 kb on - strand, within DZA65_RS00145 at 33.477 kb on - strand, within DZA65_RS00145 at 33.477 kb on - strand, within DZA65_RS00145 at 33.477 kb on - strand, within DZA65_RS00145 at 33.517 kb on + strand at 33.517 kb on + strand at 33.517 kb on + strand at 33.518 kb on - strand at 33.518 kb on - strand at 33.518 kb on - strand at 33.553 kb on + strand at 33.553 kb on + strand at 33.553 kb on + strand at 33.553 kb on + strand at 33.553 kb on + strand at 33.554 kb on - strand at 33.554 kb on - strand at 33.554 kb on - strand at 33.554 kb on - strand at 33.554 kb on - strand at 33.554 kb on - strand at 33.554 kb on - strand at 33.554 kb on - strand at 33.559 kb on + strand at 33.559 kb on + strand at 33.559 kb on + strand at 33.559 kb on + strand at 33.560 kb on - strand at 33.560 kb on - strand at 33.614 kb on + strand at 33.614 kb on + strand at 33.614 kb on + strand at 33.614 kb on + strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.626 kb on + strand at 33.626 kb on + strand at 33.626 kb on + strand at 33.627 kb on - strand at 33.644 kb on + strand at 33.644 kb on + strand at 33.649 kb on + strand at 33.649 kb on + strand at 33.649 kb on + strand at 33.649 kb on + strand at 33.649 kb on + strand at 33.649 kb on + strand at 33.649 kb on + strand at 33.649 kb on + strand at 33.650 kb on - strand at 33.650 kb on - strand at 33.650 kb on - strand at 33.650 kb on - strand at 33.650 kb on - strand at 33.660 kb on - strand at 33.669 kb on + strand at 33.669 kb on + strand at 33.669 kb on + strand at 33.669 kb on + strand at 33.670 kb on - strand at 33.670 kb on - strand at 33.670 kb on - strand at 33.670 kb on - strand at 33.670 kb on - strand at 33.670 kb on - strand at 33.739 kb on + strand at 33.740 kb on - strand at 33.740 kb on - strand at 33.746 kb on + strand at 33.746 kb on + strand at 33.746 kb on + strand at 33.746 kb on + strand at 33.781 kb on + strand, within DZA65_RS00150 at 33.781 kb on + strand, within DZA65_RS00150 at 33.782 kb on - strand, within DZA65_RS00150 at 33.789 kb on + strand, within DZA65_RS00150 at 33.789 kb on + strand, within DZA65_RS00150 at 33.790 kb on - strand, within DZA65_RS00150 at 33.817 kb on + strand, within DZA65_RS00150 at 33.817 kb on + strand, within DZA65_RS00150 at 33.817 kb on + strand, within DZA65_RS00150 at 33.832 kb on + strand, within DZA65_RS00150 at 33.832 kb on + strand, within DZA65_RS00150 at 33.832 kb on + strand, within DZA65_RS00150 at 33.832 kb on + strand, within DZA65_RS00150 at 33.832 kb on + strand, within DZA65_RS00150 at 33.833 kb on - strand, within DZA65_RS00150 at 33.833 kb on - strand, within DZA65_RS00150 at 33.833 kb on - strand, within DZA65_RS00150 at 33.833 kb on - strand, within DZA65_RS00150 at 34.049 kb on + strand, within DZA65_RS00150 at 34.050 kb on - strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.428 kb on - strand, within DZA65_RS00150 at 34.428 kb on - strand, within DZA65_RS00150
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 32,237 + DZA65_RS00135 0.35 -1.5 32,237 + DZA65_RS00135 0.35 +1.4 32,237 + DZA65_RS00135 0.35 +0.5 32,237 + DZA65_RS00135 0.35 +0.1 32,237 + DZA65_RS00135 0.35 +0.5 32,237 + DZA65_RS00135 0.35 -0.6 32,237 + DZA65_RS00135 0.35 -0.6 32,238 - DZA65_RS00135 0.35 -0.6 32,238 - DZA65_RS00135 0.35 -2.0 32,238 - DZA65_RS00135 0.35 -0.9 32,238 - DZA65_RS00135 0.35 +1.3 32,238 - DZA65_RS00135 0.35 -0.5 32,238 - DZA65_RS00135 0.35 -0.4 32,238 - DZA65_RS00135 0.35 -0.2 32,238 - DZA65_RS00135 0.35 +0.2 32,238 - DZA65_RS00135 0.35 +1.1 32,238 - DZA65_RS00135 0.35 +0.3 32,238 - DZA65_RS00135 0.35 -0.2 32,238 - DZA65_RS00135 0.35 -0.5 32,238 - DZA65_RS00135 0.35 -1.0 32,238 - DZA65_RS00135 0.35 -0.5 32,310 + DZA65_RS00135 0.50 -1.1 32,310 + DZA65_RS00135 0.50 -1.2 32,310 + DZA65_RS00135 0.50 +0.5 32,310 + DZA65_RS00135 0.50 +0.4 32,310 + DZA65_RS00135 0.50 +0.5 32,310 + DZA65_RS00135 0.50 +0.3 32,310 + DZA65_RS00135 0.50 +0.6 32,310 + DZA65_RS00135 0.50 +0.1 32,311 - DZA65_RS00135 0.50 +2.6 32,311 - DZA65_RS00135 0.50 +0.8 32,311 - -0.2 32,311 - DZA65_RS00135 0.50 -1.8 32,311 - DZA65_RS00135 0.50 -0.7 32,317 - DZA65_RS00135 0.52 -1.3 32,317 - DZA65_RS00135 0.52 -0.5 32,317 - DZA65_RS00135 0.52 -0.2 32,317 - DZA65_RS00135 0.52 -0.0 32,370 + DZA65_RS00135 0.63 -0.2 32,371 - DZA65_RS00135 0.63 -0.1 32,419 + DZA65_RS00135 0.74 +0.5 32,435 + DZA65_RS00135 0.77 +0.1 32,474 + DZA65_RS00135 0.85 -0.8 32,475 - DZA65_RS00135 0.85 +0.1 32,504 + -0.8 32,504 + -0.2 32,504 + +0.8 32,505 - -1.4 32,505 - -0.8 32,563 - -1.2 32,572 + -2.2 32,572 + +0.8 32,593 - +1.2 32,643 + -0.2 32,643 + +0.1 32,643 + -0.5 32,644 - +0.8 32,644 - +0.3 32,644 - +2.2 32,644 - -1.0 32,644 - -0.0 32,671 + +0.2 32,671 + +0.6 32,672 - +0.9 32,672 - +0.2 32,672 - -0.4 33,003 + DZA65_RS00140 0.84 -1.9 33,003 + DZA65_RS00140 0.84 +0.1 33,003 + DZA65_RS00140 0.84 -0.3 33,004 - DZA65_RS00140 0.84 -1.8 33,004 - DZA65_RS00140 0.84 -1.4 33,004 - DZA65_RS00140 0.84 +0.3 33,004 - DZA65_RS00140 0.84 +0.1 33,012 + DZA65_RS00140 0.86 +0.8 33,012 + DZA65_RS00140 0.86 +0.1 33,012 + DZA65_RS00140 0.86 -0.2 33,012 + DZA65_RS00140 0.86 -0.9 33,013 - DZA65_RS00140 0.86 -1.5 33,013 - DZA65_RS00140 0.86 -0.6 33,013 - DZA65_RS00140 0.86 +1.1 33,013 - DZA65_RS00140 0.86 +0.0 33,013 - -0.5 33,015 + DZA65_RS00140 0.87 -1.3 33,015 + DZA65_RS00140 0.87 -0.2 33,015 + DZA65_RS00140 0.87 -0.1 33,015 + DZA65_RS00140 0.87 +0.5 33,016 - DZA65_RS00140 0.87 +0.2 33,016 - DZA65_RS00140 0.87 +0.1 33,016 - DZA65_RS00140 0.87 -1.2 33,074 - +0.6 33,104 - +0.5 33,106 - -0.4 33,161 + -0.6 33,161 + +0.2 33,161 + +0.1 33,161 + +1.2 33,161 + +0.1 33,161 + -1.0 33,161 + +1.8 33,161 + -0.5 33,161 + -1.2 33,161 + +0.8 33,161 + -1.2 33,161 + +0.4 33,161 + -0.8 33,162 - +0.8 33,162 - -2.0 33,162 - -1.8 33,162 - -0.2 33,162 - -1.0 33,162 - +0.4 33,162 - -0.8 33,162 - +1.4 33,162 - +0.2 33,162 - -1.0 33,162 - +0.3 33,180 + +1.3 33,180 + +0.4 33,180 + +0.0 33,180 + +0.6 33,180 + +1.2 33,180 + -0.5 33,181 - +0.8 33,181 - +1.3 33,181 - +0.6 33,181 - -2.5 33,181 - -0.2 33,181 - +0.3 33,181 - -1.5 33,181 - -0.5 33,181 - -0.5 33,181 - +0.1 33,213 - -0.2 33,218 + +0.6 33,218 + +0.1 33,218 + +0.2 33,218 + -1.3 33,218 + +0.4 33,218 + -0.8 33,219 - -2.2 33,219 - -0.5 33,219 - -1.3 33,219 - -0.0 33,219 - +0.3 33,219 - -0.2 33,226 - -0.1 33,236 + -2.5 33,236 + -1.2 33,236 + +0.4 33,320 + DZA65_RS00145 0.35 +1.9 33,320 + DZA65_RS00145 0.35 -0.7 33,320 + DZA65_RS00145 0.35 -2.2 33,332 + DZA65_RS00145 0.39 -1.8 33,476 + DZA65_RS00145 0.88 -0.5 33,476 + DZA65_RS00145 0.88 +1.2 33,476 + DZA65_RS00145 0.88 -0.2 33,476 + DZA65_RS00145 0.88 +0.6 33,476 + DZA65_RS00145 0.88 -0.5 33,476 + DZA65_RS00145 0.88 +0.4 33,477 - DZA65_RS00145 0.89 +1.1 33,477 - DZA65_RS00145 0.89 +0.8 33,477 - DZA65_RS00145 0.89 +0.8 33,477 - DZA65_RS00145 0.89 -1.5 33,477 - DZA65_RS00145 0.89 +2.9 33,477 - DZA65_RS00145 0.89 -0.4 33,477 - DZA65_RS00145 0.89 -0.5 33,477 - DZA65_RS00145 0.89 +0.6 33,477 - DZA65_RS00145 0.89 -0.2 33,477 - DZA65_RS00145 0.89 +0.3 33,517 + -0.8 33,517 + -0.5 33,517 + -2.0 33,518 - -1.8 33,518 - +0.8 33,518 - -0.4 33,553 + -0.3 33,553 + -0.4 33,553 + +0.8 33,553 + -1.3 33,553 + -0.4 33,554 - +0.8 33,554 - +0.5 33,554 - +0.2 33,554 - +0.1 33,554 - +1.1 33,554 - -0.6 33,554 - +1.2 33,554 - -0.2 33,559 + -0.3 33,559 + -1.9 33,559 + +1.2 33,559 + -0.2 33,560 - +1.0 33,560 - +0.8 33,614 + +0.8 33,614 + -0.0 33,614 + -1.6 33,614 + -0.2 33,615 - -2.8 33,615 - -0.2 33,615 - -0.2 33,626 + -1.6 33,626 + -0.3 33,626 + +0.2 33,627 - +1.4 33,644 + +0.8 33,644 + +0.4 33,649 + -0.4 33,649 + -0.0 33,649 + +0.1 33,649 + -0.8 33,649 + -0.2 33,649 + -0.7 33,649 + +1.8 33,649 + +1.2 33,650 - -1.0 33,650 - +0.8 33,650 - +0.2 33,650 - -0.0 33,650 - -3.2 33,660 - -0.8 33,669 + +0.8 33,669 + -1.0 33,669 + +0.2 33,669 + +0.2 33,670 - +2.2 33,670 - -2.0 33,670 - -0.5 33,670 - -0.8 33,670 - -1.2 33,670 - -1.8 33,739 + -0.5 33,740 - -0.1 33,740 - -1.5 33,746 + -1.8 33,746 + +0.3 33,746 + +1.2 33,746 + -0.2 33,781 + DZA65_RS00150 0.14 +0.2 33,781 + DZA65_RS00150 0.14 +0.2 33,782 - DZA65_RS00150 0.14 +0.8 33,789 + DZA65_RS00150 0.14 +0.1 33,789 + DZA65_RS00150 0.14 -0.2 33,790 - DZA65_RS00150 0.14 -2.3 33,817 + DZA65_RS00150 0.17 +0.1 33,817 + DZA65_RS00150 0.17 -1.2 33,817 + DZA65_RS00150 0.17 -0.0 33,832 + DZA65_RS00150 0.19 -0.1 33,832 + DZA65_RS00150 0.19 -0.5 33,832 + DZA65_RS00150 0.19 +0.0 33,832 + DZA65_RS00150 0.19 -1.8 33,832 + DZA65_RS00150 0.19 -0.2 33,833 - DZA65_RS00150 0.19 -0.2 33,833 - DZA65_RS00150 0.19 -0.3 33,833 - DZA65_RS00150 0.19 +0.2 33,833 - DZA65_RS00150 0.19 -0.3 34,049 + DZA65_RS00150 0.41 +0.3 34,050 - DZA65_RS00150 0.41 -0.1 34,243 + DZA65_RS00150 0.61 -1.7 34,243 + DZA65_RS00150 0.61 -0.8 34,243 + DZA65_RS00150 0.61 -1.4 34,243 + DZA65_RS00150 0.61 -0.2 34,243 + DZA65_RS00150 0.61 +2.2 34,243 + DZA65_RS00150 0.61 +1.8 34,244 - DZA65_RS00150 0.61 -0.2 34,244 - DZA65_RS00150 0.61 +1.0 34,244 - DZA65_RS00150 0.61 +1.0 34,244 - DZA65_RS00150 0.61 -0.8 34,244 - DZA65_RS00150 0.61 +0.5 34,244 - DZA65_RS00150 0.61 +1.8 34,427 + DZA65_RS00150 0.80 +0.0 34,427 + DZA65_RS00150 0.80 -0.5 34,427 + DZA65_RS00150 0.80 +0.7 34,427 + DZA65_RS00150 0.80 +0.4 34,427 + DZA65_RS00150 0.80 -1.8 34,427 + DZA65_RS00150 0.80 +0.3 34,427 + DZA65_RS00150 0.80 +1.7 34,427 + DZA65_RS00150 0.80 +1.3 34,428 - DZA65_RS00150 0.80 -1.2 34,428 - DZA65_RS00150 0.80 +2.3
Or see this region's nucleotide sequence