Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19365 and DZA65_RS19370 overlap by 16 nucleotides DZA65_RS19370 and DZA65_RS19375 are separated by 161 nucleotides DZA65_RS19375 and DZA65_RS19380 are separated by 100 nucleotides
DZA65_RS19365: DZA65_RS19365 - threonine/serine exporter, at 4,188,114 to 4,188,584
_RS19365
DZA65_RS19370: DZA65_RS19370 - threonine/serine exporter ThrE family protein, at 4,188,569 to 4,189,351
_RS19370
DZA65_RS19375: DZA65_RS19375 - LysE family transporter, at 4,189,513 to 4,190,127
_RS19375
DZA65_RS19380: DZA65_RS19380 - carbamoyl-phosphate synthase large subunit, at 4,190,228 to 4,193,452
_RS19380
Position (kb) 4189
4190
4191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4188.513 kb on - strand, within DZA65_RS19365 at 4188.625 kb on + strand at 4188.625 kb on + strand at 4188.625 kb on + strand at 4188.697 kb on + strand, within DZA65_RS19370 at 4188.697 kb on + strand at 4188.698 kb on - strand, within DZA65_RS19370 at 4188.836 kb on - strand, within DZA65_RS19370 at 4188.836 kb on - strand, within DZA65_RS19370 at 4188.844 kb on + strand, within DZA65_RS19370 at 4188.844 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.888 kb on + strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4188.889 kb on - strand, within DZA65_RS19370 at 4189.063 kb on + strand, within DZA65_RS19370 at 4189.063 kb on + strand, within DZA65_RS19370 at 4189.063 kb on + strand, within DZA65_RS19370 at 4189.063 kb on + strand, within DZA65_RS19370 at 4189.063 kb on + strand, within DZA65_RS19370 at 4189.063 kb on + strand, within DZA65_RS19370 at 4189.063 kb on + strand, within DZA65_RS19370 at 4189.063 kb on + strand, within DZA65_RS19370 at 4189.064 kb on - strand, within DZA65_RS19370 at 4189.064 kb on - strand, within DZA65_RS19370 at 4189.064 kb on - strand, within DZA65_RS19370 at 4189.064 kb on - strand, within DZA65_RS19370 at 4189.064 kb on - strand, within DZA65_RS19370 at 4189.064 kb on - strand, within DZA65_RS19370 at 4189.091 kb on + strand at 4189.091 kb on + strand, within DZA65_RS19370 at 4189.092 kb on - strand, within DZA65_RS19370 at 4189.092 kb on - strand, within DZA65_RS19370 at 4189.264 kb on + strand, within DZA65_RS19370 at 4189.264 kb on + strand, within DZA65_RS19370 at 4189.264 kb on + strand, within DZA65_RS19370 at 4189.264 kb on + strand, within DZA65_RS19370 at 4189.264 kb on + strand, within DZA65_RS19370 at 4189.264 kb on + strand, within DZA65_RS19370 at 4189.264 kb on + strand, within DZA65_RS19370 at 4189.265 kb on - strand, within DZA65_RS19370 at 4189.265 kb on - strand, within DZA65_RS19370 at 4189.265 kb on - strand, within DZA65_RS19370 at 4189.265 kb on - strand, within DZA65_RS19370 at 4189.265 kb on - strand, within DZA65_RS19370 at 4189.265 kb on - strand, within DZA65_RS19370 at 4189.265 kb on - strand, within DZA65_RS19370 at 4189.265 kb on - strand, within DZA65_RS19370 at 4189.265 kb on - strand, within DZA65_RS19370 at 4189.306 kb on + strand at 4189.306 kb on + strand at 4189.322 kb on - strand at 4189.346 kb on + strand at 4189.354 kb on + strand at 4189.354 kb on + strand at 4189.354 kb on + strand at 4189.354 kb on + strand at 4189.354 kb on + strand at 4189.354 kb on + strand at 4189.354 kb on + strand at 4189.354 kb on + strand at 4189.355 kb on - strand at 4189.355 kb on - strand at 4189.355 kb on - strand at 4189.355 kb on - strand at 4189.355 kb on - strand at 4189.355 kb on - strand at 4189.355 kb on - strand at 4189.355 kb on - strand at 4189.355 kb on - strand at 4189.355 kb on - strand at 4189.387 kb on + strand at 4189.388 kb on - strand at 4189.388 kb on - strand at 4189.389 kb on + strand at 4189.390 kb on - strand at 4189.390 kb on - strand at 4189.390 kb on - strand at 4189.403 kb on - strand at 4189.404 kb on + strand at 4189.465 kb on - strand at 4189.465 kb on - strand at 4189.465 kb on - strand at 4189.465 kb on - strand at 4189.465 kb on - strand at 4189.465 kb on - strand at 4189.465 kb on - strand at 4189.509 kb on + strand at 4189.509 kb on + strand at 4189.509 kb on + strand at 4189.509 kb on + strand at 4189.509 kb on + strand at 4189.509 kb on + strand at 4189.509 kb on + strand at 4189.510 kb on - strand at 4189.510 kb on - strand at 4189.510 kb on - strand at 4189.510 kb on - strand at 4189.510 kb on - strand at 4189.510 kb on - strand at 4189.542 kb on + strand at 4189.542 kb on + strand at 4189.543 kb on - strand at 4189.675 kb on + strand, within DZA65_RS19375 at 4189.676 kb on - strand, within DZA65_RS19375 at 4189.676 kb on - strand, within DZA65_RS19375 at 4189.753 kb on + strand, within DZA65_RS19375 at 4189.753 kb on + strand, within DZA65_RS19375 at 4189.854 kb on + strand, within DZA65_RS19375 at 4189.854 kb on + strand, within DZA65_RS19375 at 4189.855 kb on - strand, within DZA65_RS19375 at 4189.893 kb on + strand, within DZA65_RS19375 at 4189.894 kb on - strand, within DZA65_RS19375 at 4189.918 kb on - strand, within DZA65_RS19375 at 4190.121 kb on - strand at 4190.125 kb on + strand at 4190.125 kb on + strand at 4190.125 kb on + strand at 4190.125 kb on + strand at 4190.125 kb on + strand at 4190.126 kb on - strand at 4190.126 kb on - strand at 4190.141 kb on + strand at 4190.141 kb on + strand at 4190.142 kb on - strand at 4190.182 kb on + strand at 4190.183 kb on - strand at 4190.240 kb on - strand at 4190.240 kb on - strand at 4190.334 kb on + strand at 4190.335 kb on - strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.344 kb on + strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.345 kb on - strand at 4190.346 kb on + strand at 4190.346 kb on + strand at 4190.346 kb on + strand at 4190.346 kb on + strand at 4190.346 kb on + strand at 4190.347 kb on - strand at 4190.347 kb on - strand at 4190.347 kb on - strand at 4190.347 kb on - strand at 4190.347 kb on - strand at 4190.347 kb on - strand at 4190.347 kb on - strand at 4190.347 kb on - strand at 4190.347 kb on - strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.418 kb on + strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.419 kb on - strand at 4190.424 kb on + strand at 4190.424 kb on + strand at 4190.425 kb on - strand at 4190.425 kb on - strand at 4190.790 kb on + strand, within DZA65_RS19380 at 4190.791 kb on - strand, within DZA65_RS19380 at 4190.791 kb on - strand, within DZA65_RS19380 at 4190.791 kb on - strand, within DZA65_RS19380 at 4190.793 kb on + strand, within DZA65_RS19380 at 4190.794 kb on - strand, within DZA65_RS19380 at 4190.904 kb on - strand, within DZA65_RS19380 at 4190.940 kb on + strand, within DZA65_RS19380 at 4191.057 kb on + strand, within DZA65_RS19380 at 4191.057 kb on + strand, within DZA65_RS19380 at 4191.057 kb on + strand, within DZA65_RS19380 at 4191.058 kb on - strand, within DZA65_RS19380 at 4191.092 kb on + strand, within DZA65_RS19380 at 4191.093 kb on - strand, within DZA65_RS19380 at 4191.110 kb on - strand, within DZA65_RS19380 at 4191.110 kb on - strand, within DZA65_RS19380
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,188,513 - DZA65_RS19365 0.85 -2.4 4,188,625 + -0.4 4,188,625 + -1.6 4,188,625 + +0.3 4,188,697 + DZA65_RS19370 0.16 -1.2 4,188,697 + -0.3 4,188,698 - DZA65_RS19370 0.16 -2.6 4,188,836 - DZA65_RS19370 0.34 -0.1 4,188,836 - DZA65_RS19370 0.34 +0.1 4,188,844 + DZA65_RS19370 0.35 +0.2 4,188,844 + DZA65_RS19370 0.35 +1.1 4,188,888 + DZA65_RS19370 0.41 -1.0 4,188,888 + DZA65_RS19370 0.41 +0.7 4,188,888 + DZA65_RS19370 0.41 -0.7 4,188,888 + DZA65_RS19370 0.41 +0.7 4,188,888 + DZA65_RS19370 0.41 -0.4 4,188,888 + DZA65_RS19370 0.41 -0.3 4,188,888 + DZA65_RS19370 0.41 -0.8 4,188,888 + DZA65_RS19370 0.41 -0.2 4,188,888 + DZA65_RS19370 0.41 -0.9 4,188,888 + DZA65_RS19370 0.41 +0.5 4,188,888 + DZA65_RS19370 0.41 -0.0 4,188,888 + DZA65_RS19370 0.41 +0.3 4,188,888 + DZA65_RS19370 0.41 +0.0 4,188,888 + DZA65_RS19370 0.41 +2.2 4,188,888 + DZA65_RS19370 0.41 -0.7 4,188,888 + DZA65_RS19370 0.41 +0.7 4,188,888 + DZA65_RS19370 0.41 +1.8 4,188,888 + DZA65_RS19370 0.41 -2.8 4,188,888 + DZA65_RS19370 0.41 -1.6 4,188,889 - DZA65_RS19370 0.41 -0.3 4,188,889 - DZA65_RS19370 0.41 -0.5 4,188,889 - DZA65_RS19370 0.41 -1.7 4,188,889 - DZA65_RS19370 0.41 -0.0 4,188,889 - DZA65_RS19370 0.41 -0.2 4,188,889 - DZA65_RS19370 0.41 +1.2 4,188,889 - DZA65_RS19370 0.41 -1.3 4,188,889 - DZA65_RS19370 0.41 -0.6 4,188,889 - DZA65_RS19370 0.41 -0.5 4,188,889 - DZA65_RS19370 0.41 -0.5 4,188,889 - DZA65_RS19370 0.41 -0.0 4,188,889 - DZA65_RS19370 0.41 +0.1 4,188,889 - DZA65_RS19370 0.41 -0.0 4,188,889 - DZA65_RS19370 0.41 +0.9 4,188,889 - DZA65_RS19370 0.41 +0.5 4,188,889 - DZA65_RS19370 0.41 +0.2 4,188,889 - DZA65_RS19370 0.41 -0.1 4,189,063 + DZA65_RS19370 0.63 -0.5 4,189,063 + DZA65_RS19370 0.63 -1.3 4,189,063 + DZA65_RS19370 0.63 +0.4 4,189,063 + DZA65_RS19370 0.63 +0.7 4,189,063 + DZA65_RS19370 0.63 +0.2 4,189,063 + DZA65_RS19370 0.63 -0.3 4,189,063 + DZA65_RS19370 0.63 +0.8 4,189,063 + DZA65_RS19370 0.63 +2.0 4,189,064 - DZA65_RS19370 0.63 -1.5 4,189,064 - DZA65_RS19370 0.63 +0.4 4,189,064 - DZA65_RS19370 0.63 -1.2 4,189,064 - DZA65_RS19370 0.63 -0.6 4,189,064 - DZA65_RS19370 0.63 +0.7 4,189,064 - DZA65_RS19370 0.63 +0.4 4,189,091 + +0.7 4,189,091 + DZA65_RS19370 0.67 -0.2 4,189,092 - DZA65_RS19370 0.67 +0.7 4,189,092 - DZA65_RS19370 0.67 +1.2 4,189,264 + DZA65_RS19370 0.89 -0.3 4,189,264 + DZA65_RS19370 0.89 -0.6 4,189,264 + DZA65_RS19370 0.89 -0.3 4,189,264 + DZA65_RS19370 0.89 +1.4 4,189,264 + DZA65_RS19370 0.89 +0.3 4,189,264 + DZA65_RS19370 0.89 -1.1 4,189,264 + DZA65_RS19370 0.89 -0.7 4,189,265 - DZA65_RS19370 0.89 -0.0 4,189,265 - DZA65_RS19370 0.89 -0.4 4,189,265 - DZA65_RS19370 0.89 -0.4 4,189,265 - DZA65_RS19370 0.89 -0.0 4,189,265 - DZA65_RS19370 0.89 +0.8 4,189,265 - DZA65_RS19370 0.89 -2.1 4,189,265 - DZA65_RS19370 0.89 -0.9 4,189,265 - DZA65_RS19370 0.89 -1.6 4,189,265 - DZA65_RS19370 0.89 -0.4 4,189,306 + -2.1 4,189,306 + +2.7 4,189,322 - -0.3 4,189,346 + +0.3 4,189,354 + -1.0 4,189,354 + +0.2 4,189,354 + +1.3 4,189,354 + -0.3 4,189,354 + +0.5 4,189,354 + +0.4 4,189,354 + -0.5 4,189,354 + -0.7 4,189,355 - -0.9 4,189,355 - -0.5 4,189,355 - -0.0 4,189,355 - -0.1 4,189,355 - +0.1 4,189,355 - -0.5 4,189,355 - -0.1 4,189,355 - -0.3 4,189,355 - +1.1 4,189,355 - -0.7 4,189,387 + +2.0 4,189,388 - +0.7 4,189,388 - -0.3 4,189,389 + +0.9 4,189,390 - +0.0 4,189,390 - +0.7 4,189,390 - -0.4 4,189,403 - -0.5 4,189,404 + -0.7 4,189,465 - +1.0 4,189,465 - -0.2 4,189,465 - -0.0 4,189,465 - +0.2 4,189,465 - -0.1 4,189,465 - +0.1 4,189,465 - -0.7 4,189,509 + -0.7 4,189,509 + -0.5 4,189,509 + +1.1 4,189,509 + -0.8 4,189,509 + -0.3 4,189,509 + -1.0 4,189,509 + +1.7 4,189,510 - -0.6 4,189,510 - +0.1 4,189,510 - +0.1 4,189,510 - -0.2 4,189,510 - -0.4 4,189,510 - +1.6 4,189,542 + -0.4 4,189,542 + +0.1 4,189,543 - -0.0 4,189,675 + DZA65_RS19375 0.26 -1.9 4,189,676 - DZA65_RS19375 0.27 +0.2 4,189,676 - DZA65_RS19375 0.27 +0.8 4,189,753 + DZA65_RS19375 0.39 -0.2 4,189,753 + DZA65_RS19375 0.39 +0.9 4,189,854 + DZA65_RS19375 0.55 +0.2 4,189,854 + DZA65_RS19375 0.55 -1.5 4,189,855 - DZA65_RS19375 0.56 -0.8 4,189,893 + DZA65_RS19375 0.62 -1.6 4,189,894 - DZA65_RS19375 0.62 -3.3 4,189,918 - DZA65_RS19375 0.66 -1.9 4,190,121 - -0.7 4,190,125 + +0.5 4,190,125 + -0.9 4,190,125 + +0.9 4,190,125 + -0.3 4,190,125 + -1.1 4,190,126 - -0.2 4,190,126 - -1.9 4,190,141 + +0.5 4,190,141 + +0.3 4,190,142 - +1.9 4,190,182 + -1.8 4,190,183 - +0.7 4,190,240 - -0.1 4,190,240 - +1.0 4,190,334 + -0.3 4,190,335 - -0.5 4,190,344 + -1.3 4,190,344 + -0.4 4,190,344 + -1.7 4,190,344 + -2.1 4,190,344 + +0.0 4,190,344 + +0.7 4,190,344 + +0.4 4,190,344 + -1.6 4,190,344 + -0.0 4,190,344 + -2.5 4,190,344 + -2.9 4,190,344 + -1.0 4,190,345 - -0.9 4,190,345 - -1.9 4,190,345 - -0.3 4,190,345 - -3.0 4,190,345 - +0.7 4,190,345 - +0.3 4,190,345 - -1.4 4,190,345 - -2.3 4,190,345 - -0.9 4,190,345 - -0.6 4,190,345 - -1.5 4,190,345 - -1.1 4,190,345 - -0.3 4,190,345 - -1.8 4,190,345 - -1.3 4,190,346 + -1.9 4,190,346 + -2.0 4,190,346 + -1.5 4,190,346 + -1.3 4,190,346 + -1.3 4,190,347 - -1.0 4,190,347 - -1.3 4,190,347 - -2.5 4,190,347 - -0.9 4,190,347 - -3.2 4,190,347 - -1.9 4,190,347 - -2.5 4,190,347 - -3.5 4,190,347 - -0.5 4,190,418 + -0.6 4,190,418 + -2.8 4,190,418 + -0.3 4,190,418 + -1.6 4,190,418 + -3.2 4,190,418 + -2.1 4,190,418 + -2.2 4,190,418 + -0.4 4,190,418 + +0.1 4,190,418 + -1.8 4,190,418 + -1.1 4,190,418 + -1.9 4,190,418 + -1.9 4,190,419 - -0.3 4,190,419 - +0.1 4,190,419 - -0.7 4,190,419 - -2.1 4,190,419 - -1.5 4,190,419 - -0.3 4,190,419 - -0.3 4,190,419 - -0.5 4,190,419 - -1.3 4,190,419 - -0.5 4,190,419 - -3.0 4,190,419 - -2.2 4,190,419 - -3.1 4,190,419 - -1.5 4,190,424 + +0.0 4,190,424 + -1.1 4,190,425 - -1.7 4,190,425 - -1.9 4,190,790 + DZA65_RS19380 0.17 -1.5 4,190,791 - DZA65_RS19380 0.17 -1.3 4,190,791 - DZA65_RS19380 0.17 +1.5 4,190,791 - DZA65_RS19380 0.17 -1.6 4,190,793 + DZA65_RS19380 0.18 -2.1 4,190,794 - DZA65_RS19380 0.18 -2.8 4,190,904 - DZA65_RS19380 0.21 -2.5 4,190,940 + DZA65_RS19380 0.22 +0.2 4,191,057 + DZA65_RS19380 0.26 -0.9 4,191,057 + DZA65_RS19380 0.26 +2.0 4,191,057 + DZA65_RS19380 0.26 -2.1 4,191,058 - DZA65_RS19380 0.26 -2.6 4,191,092 + DZA65_RS19380 0.27 -1.8 4,191,093 - DZA65_RS19380 0.27 +0.3 4,191,110 - DZA65_RS19380 0.27 -1.9 4,191,110 - DZA65_RS19380 0.27 -1.3
Or see this region's nucleotide sequence