Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18175

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,915,865	+				-0.7
3,915,877	+				-1.7
3,915,878	-				+0.5
3,915,878	-				-0.4
3,915,878	-				+0.6
3,915,878	-				-1.0
3,915,931	+				-1.0
3,915,931	+				-0.4
3,915,931	+				-1.7
3,915,931	+				-0.1
3,915,931	+				-1.6
3,915,931	+				+1.2
3,915,932	-				+0.1
3,915,932	-				-0.2
3,915,932	-				-1.4
3,915,932	-				+0.3
3,915,932	-				+0.3
3,915,932	-				+0.3
3,915,932	-				+0.4
3,915,932	-				-0.8
3,915,932	-				-1.0
3,915,969	-				+0.6
3,916,030	+				-0.7
3,916,030	+				-0.1
3,916,031	-				-1.0
3,916,031	-				-1.0
3,916,031	-				+1.6
3,916,061	+		DZA65_RS18170	0.12	+1.2
3,916,182	-		DZA65_RS18170	0.28	-0.2
3,916,282	+		DZA65_RS18170	0.41	-1.9
3,916,282	+		DZA65_RS18170	0.41	+0.7
3,916,282	+		DZA65_RS18170	0.41	-0.3
3,916,282	+		DZA65_RS18170	0.41	-0.1
3,916,282	+		DZA65_RS18170	0.41	-0.8
3,916,282	+		DZA65_RS18170	0.41	-1.6
3,916,283	-		DZA65_RS18170	0.41	+0.0
3,916,325	+		DZA65_RS18170	0.46	-1.0
3,916,325	+		DZA65_RS18170	0.46	-0.7
3,916,325	+		DZA65_RS18170	0.46	+0.1
3,916,325	+		DZA65_RS18170	0.46	-0.0
3,916,325	+		DZA65_RS18170	0.46	-2.4
3,916,325	+		DZA65_RS18170	0.46	-0.6
3,916,325	+		DZA65_RS18170	0.46	-0.2
3,916,326	-		DZA65_RS18170	0.47	-0.0
3,916,326	-		DZA65_RS18170	0.47	-0.2
3,916,326	-		DZA65_RS18170	0.47	-0.4
3,916,326	-		DZA65_RS18170	0.47	+0.6
3,916,344	-		DZA65_RS18170	0.49	+0.6
3,916,461	-		DZA65_RS18170	0.64	+1.1
3,916,485	+		DZA65_RS18170	0.67	-0.1
3,916,485	+		DZA65_RS18170	0.67	-0.1
3,916,485	+		DZA65_RS18170	0.67	+0.9
3,916,485	+		DZA65_RS18170	0.67	+0.6
3,916,486	-		DZA65_RS18170	0.67	+1.9
3,916,486	-		DZA65_RS18170	0.67	-0.0
3,916,486	-		DZA65_RS18170	0.67	+0.2
3,916,486	-		DZA65_RS18170	0.67	+1.0
3,916,486	-		DZA65_RS18170	0.67	+1.1
3,916,486	-		DZA65_RS18170	0.67	+0.3
3,916,503	+		DZA65_RS18170	0.70	-0.2
3,916,503	+		DZA65_RS18170	0.70	-0.3
3,916,503	+		DZA65_RS18170	0.70	-0.0
3,916,504	-		DZA65_RS18170	0.70	-2.0
3,916,563	+		DZA65_RS18170	0.77	-0.0
3,916,563	+		DZA65_RS18170	0.77	-0.4
3,916,564	-		DZA65_RS18170	0.77	-0.4
3,916,633	+		DZA65_RS18170	0.86	-1.2
3,916,633	+		DZA65_RS18170	0.86	-2.0
3,916,634	-		DZA65_RS18170	0.87	-0.0
3,916,634	-		DZA65_RS18170	0.87	-0.7
3,916,696	+				+0.6
3,916,696	+				+1.2
3,916,696	+				+0.6
3,916,697	-				-1.0
3,916,748	+				+0.6
3,916,749	-				+0.5
3,916,749	-				-0.4
3,916,755	+				+1.2
3,916,756	-				+0.6
3,916,787	+				+0.3
3,916,787	+				+0.3
3,916,787	+				-0.7
3,916,787	+				+0.8
3,916,787	+				-1.7
3,916,787	+				+0.7
3,916,787	+				-0.7
3,916,788	-				-0.2
3,916,788	-				+0.7
3,916,788	-				-0.9
3,916,788	-				+0.6
3,916,788	-				+0.3
3,916,791	+				-1.6
3,916,791	+				-0.2
3,916,792	-				-1.1
3,916,799	+				-0.6
3,916,799	+				-2.3
3,916,799	+				+0.3
3,916,799	+				-0.2
3,916,800	-				-0.8
3,916,804	+				+0.8
3,916,804	+				-2.0
3,916,805	-				-0.4
3,916,805	-				+1.3
3,916,808	+				+0.6
3,916,809	-				-0.7
3,916,809	-				+0.4
3,916,820	+				+0.6
3,916,820	+				+0.6
3,916,821	-				+0.4
3,916,821	-				+1.2
3,916,836	+				-0.4
3,916,837	-				-1.7
3,916,837	-				-1.4
3,916,840	+				+1.0
3,916,910	-				-0.5
3,916,910	-				-0.4
3,916,910	-				-0.7
3,916,910	-				+0.3
3,916,955	+				+0.3
3,916,956	-				-2.4
3,916,956	-				-1.7
3,916,956	-				-0.9
3,916,956	-				-0.4
3,916,957	+				+0.8
3,916,957	+				-0.7
3,916,957	+				+1.0
3,916,958	-				-0.4
3,916,958	-				+0.6
3,916,989	-				-1.4
3,917,034	-		DZA65_RS18175	0.13	-0.6
3,917,099	+		DZA65_RS18175	0.18	+0.0
3,917,162	+		DZA65_RS18175	0.23	-1.2
3,917,162	+		DZA65_RS18175	0.23	+1.4
3,917,163	-		DZA65_RS18175	0.23	-1.4
3,917,426	-		DZA65_RS18175	0.42	-1.3
3,917,426	-		DZA65_RS18175	0.42	+1.2
3,917,594	+		DZA65_RS18175	0.55	-3.1
3,917,707	+		DZA65_RS18175	0.63	-1.4
3,917,740	+		DZA65_RS18175	0.66	-2.2
3,917,740	+		DZA65_RS18175	0.66	-0.3
3,917,740	+				-0.4
3,917,740	+		DZA65_RS18175	0.66	-1.4
3,917,740	+		DZA65_RS18175	0.66	-0.4
3,917,740	+		DZA65_RS18175	0.66	-0.5
3,917,740	+		DZA65_RS18175	0.66	-1.7
3,917,740	+		DZA65_RS18175	0.66	-1.0
3,917,740	+		DZA65_RS18175	0.66	-0.9
3,917,740	+		DZA65_RS18175	0.66	-0.8
3,917,740	+		DZA65_RS18175	0.66	+0.8
3,917,741	-		DZA65_RS18175	0.66	-0.2
3,917,741	-				-1.0
3,917,741	-		DZA65_RS18175	0.66	+2.0
3,917,741	-		DZA65_RS18175	0.66	+0.3
3,917,741	-		DZA65_RS18175	0.66	+2.3
3,917,749	+		DZA65_RS18175	0.67	-1.7
3,917,749	+		DZA65_RS18175	0.67	-1.2
3,917,750	-		DZA65_RS18175	0.67	-0.4
3,917,750	-		DZA65_RS18175	0.67	-0.4
3,917,949	+		DZA65_RS18175	0.81	+1.4
3,917,949	+		DZA65_RS18175	0.81	-0.4
3,917,949	+		DZA65_RS18175	0.81	-0.8
3,917,950	-		DZA65_RS18175	0.82	-0.3
3,917,950	-		DZA65_RS18175	0.82	-0.3
3,917,950	-		DZA65_RS18175	0.82	-0.7
3,917,960	-		DZA65_RS18175	0.82	-0.7
3,917,960	-		DZA65_RS18175	0.82	-0.4
3,917,975	+		DZA65_RS18175	0.83	-0.4
3,917,975	+		DZA65_RS18175	0.83	-1.4
3,917,975	+		DZA65_RS18175	0.83	-0.3
3,917,976	-		DZA65_RS18175	0.83	+0.3
3,918,068	+				+1.2
3,918,069	-				+0.2
3,918,069	-				+1.8
3,918,080	+				-2.0
3,918,094	+				-1.0
3,918,095	-				-1.4
3,918,095	-				+0.3
3,918,161	+				-0.1
3,918,161	+				-1.2
3,918,162	-				-1.7
3,918,170	+				+1.9
3,918,171	-				+0.3
3,918,200	+				-0.9
3,918,200	+				-3.0
3,918,200	+				-2.2
3,918,200	+				+1.0
3,918,200	+				+1.1
3,918,200	+				-0.5
3,918,201	-				-0.0
3,918,201	-				+0.1
3,918,201	-				-0.8
3,918,201	-				+0.4
3,918,201	-				+0.8
3,918,214	+				+0.2
3,918,222	-				+1.1
3,918,222	-				+2.0
3,918,222	-				-0.0
3,918,222	-				+0.4
3,918,222	-				-2.4
3,918,222	-				-1.0
3,918,234	+				-0.4
3,918,289	+				-0.4
3,918,289	+				+0.4
3,918,289	+				-0.1
3,918,289	+				+0.0
3,918,289	+				-0.3
3,918,335	+				+0.2
3,918,335	+				+0.1
3,918,336	-				+0.6
3,918,336	-				-1.7
3,918,423	+		DZA65_RS18180	0.15	+0.3
3,918,423	+		DZA65_RS18180	0.15	-0.3
3,918,423	+		DZA65_RS18180	0.15	+1.0
3,918,424	-		DZA65_RS18180	0.15	-0.9
3,918,424	-		DZA65_RS18180	0.15	+0.4
3,918,494	+		DZA65_RS18180	0.21	-0.6
3,918,650	+		DZA65_RS18180	0.32	+0.2
3,918,651	-		DZA65_RS18180	0.32	+1.3
3,918,802	+		DZA65_RS18180	0.43	-0.4
3,918,803	-		DZA65_RS18180	0.43	-1.4
3,918,803	-		DZA65_RS18180	0.43	-0.4
3,918,803	-		DZA65_RS18180	0.43	-0.0
3,918,803	-		DZA65_RS18180	0.43	-0.1
3,918,803	-		DZA65_RS18180	0.43	-2.2
3,918,803	-		DZA65_RS18180	0.43	-0.4
3,918,803	-		DZA65_RS18180	0.43	-2.9
3,918,946	-		DZA65_RS18180	0.54	-1.4
3,919,051	+		DZA65_RS18180	0.62	-0.9
3,919,051	+		DZA65_RS18180	0.62	-0.4
3,919,052	-		DZA65_RS18180	0.62	+0.0
3,919,084	+		DZA65_RS18180	0.64	-2.0
3,919,085	-		DZA65_RS18180	0.64	-1.1
3,919,115	+		DZA65_RS18180	0.66	-0.4
3,919,117	+		DZA65_RS18180	0.66	-1.0
3,919,117	+		DZA65_RS18180	0.66	-0.1
3,919,117	+		DZA65_RS18180	0.66	-0.1
3,919,117	+		DZA65_RS18180	0.66	+1.6
3,919,117	+		DZA65_RS18180	0.66	-0.3
3,919,117	+		DZA65_RS18180	0.66	-1.0
3,919,117	+		DZA65_RS18180	0.66	-0.2
3,919,117	+		DZA65_RS18180	0.66	+0.4
3,919,117	+		DZA65_RS18180	0.66	+1.0
3,919,117	+		DZA65_RS18180	0.66	-1.2
3,919,117	+		DZA65_RS18180	0.66	+1.4
3,919,117	+		DZA65_RS18180	0.66	-1.2
3,919,117	+		DZA65_RS18180	0.66	-0.6
3,919,117	+		DZA65_RS18180	0.66	+1.9
3,919,117	+		DZA65_RS18180	0.66	-1.4
3,919,118	-		DZA65_RS18180	0.66	+0.4
3,919,118	-		DZA65_RS18180	0.66	-0.6
3,919,118	-		DZA65_RS18180	0.66	-0.0
3,919,118	-		DZA65_RS18180	0.66	-0.3
3,919,118	-		DZA65_RS18180	0.66	+0.8
3,919,118	-		DZA65_RS18180	0.66	+0.6
3,919,118	-		DZA65_RS18180	0.66	-0.8
3,919,118	-		DZA65_RS18180	0.66	+0.6
3,919,126	+		DZA65_RS18180	0.67	-0.2