Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17815

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,833,493	-		DZA65_RS17805	0.55	-0.6
3,833,493	-		DZA65_RS17805	0.55	+2.1
3,833,621	+		DZA65_RS17805	0.73	+0.9
3,833,621	+		DZA65_RS17805	0.73	+0.8
3,833,621	+		DZA65_RS17805	0.73	+0.5
3,833,621	+		DZA65_RS17805	0.73	+1.0
3,833,656	+		DZA65_RS17805	0.78	+1.7
3,833,656	+		DZA65_RS17805	0.78	-0.3
3,833,690	+		DZA65_RS17805	0.82	+1.0
3,833,691	-		DZA65_RS17805	0.82	-0.8
3,833,691	-		DZA65_RS17805	0.82	+1.0
3,833,782	+				-0.3
3,833,785	+				+0.1
3,833,785	+				+0.2
3,833,785	+				+0.1
3,833,786	-				-1.2
3,833,786	-				-1.2
3,833,786	-				-1.1
3,833,786	-				+0.2
3,833,786	-				-2.8
3,833,786	-				-1.6
3,833,789	+				-0.2
3,833,789	+				+1.2
3,833,789	+				-0.0
3,833,789	+				+0.6
3,833,789	+				-0.0
3,833,789	+				-0.0
3,833,789	+				-0.4
3,833,789	+				-0.4
3,833,790	-				-0.8
3,833,790	-				+0.2
3,833,790	-				-0.9
3,833,846	+				-0.1
3,833,846	+				-0.1
3,833,846	+				+0.1
3,833,847	-				+0.6
3,833,847	-				-0.4
3,833,847	-				-0.4
3,833,847	-				+0.1
3,833,847	-				-0.2
3,833,850	-				-0.3
3,833,850	-				-0.2
3,833,850	-				+0.7
3,833,850	-				-0.4
3,833,850	-				-0.9
3,833,850	-				+1.4
3,833,861	+				+0.0
3,833,862	-				+1.9
3,833,877	-		DZA65_RS17810	0.12	+1.4
3,833,877	-		DZA65_RS17810	0.12	-0.9
3,833,899	+		DZA65_RS17810	0.15	-1.4
3,833,899	+		DZA65_RS17810	0.15	-2.3
3,833,900	-		DZA65_RS17810	0.15	+0.1
3,833,900	-		DZA65_RS17810	0.15	-0.1
3,833,926	-		DZA65_RS17810	0.19	+1.3
3,834,147	+		DZA65_RS17810	0.53	+0.9
3,834,290	+		DZA65_RS17810	0.75	+0.6
3,834,291	-		DZA65_RS17810	0.75	+0.7
3,834,291	-		DZA65_RS17810	0.75	+1.0
3,834,291	-		DZA65_RS17810	0.75	-0.4
3,834,291	-		DZA65_RS17810	0.75	-0.1
3,834,291	-		DZA65_RS17810	0.75	-0.3
3,834,432	+				+2.7
3,834,530	-		DZA65_RS17815	0.11	-1.0
3,834,530	-		DZA65_RS17815	0.11	-0.0
3,834,530	-		DZA65_RS17815	0.11	-0.4
3,834,530	-		DZA65_RS17815	0.11	-1.0
3,834,530	-		DZA65_RS17815	0.11	-1.3
3,834,530	-		DZA65_RS17815	0.11	-0.6
3,834,550	+		DZA65_RS17815	0.14	+0.2
3,834,550	+		DZA65_RS17815	0.14	-0.4
3,834,550	+		DZA65_RS17815	0.14	+1.0
3,834,550	+		DZA65_RS17815	0.14	-0.8
3,834,550	+		DZA65_RS17815	0.14	+0.2
3,834,550	+		DZA65_RS17815	0.14	-0.4
3,834,550	+		DZA65_RS17815	0.14	-0.4
3,834,550	+		DZA65_RS17815	0.14	-0.8
3,834,550	+		DZA65_RS17815	0.14	+0.1
3,834,550	+		DZA65_RS17815	0.14	-1.0
3,834,550	+		DZA65_RS17815	0.14	+0.7
3,834,550	+		DZA65_RS17815	0.14	-0.3
3,834,551	-		DZA65_RS17815	0.14	-0.2
3,834,551	-		DZA65_RS17815	0.14	+0.4
3,834,551	-		DZA65_RS17815	0.14	-0.4
3,834,551	-		DZA65_RS17815	0.14	-1.4
3,834,551	-		DZA65_RS17815	0.14	-0.0
3,834,551	-		DZA65_RS17815	0.14	-0.2
3,834,585	+		DZA65_RS17815	0.19	-0.7
3,834,585	+		DZA65_RS17815	0.19	-2.0
3,834,586	-		DZA65_RS17815	0.20	-0.8
3,834,717	-		DZA65_RS17815	0.39	+0.2
3,834,811	+		DZA65_RS17815	0.53	+0.0
3,834,811	+		DZA65_RS17815	0.53	-1.0
3,834,811	+		DZA65_RS17815	0.53	+0.4
3,834,811	+		DZA65_RS17815	0.53	+0.4
3,834,811	+		DZA65_RS17815	0.53	-0.9
3,834,812	-		DZA65_RS17815	0.53	-1.0
3,834,923	+		DZA65_RS17815	0.70	+1.4
3,834,923	+		DZA65_RS17815	0.70	+0.1
3,834,923	+		DZA65_RS17815	0.70	+0.0
3,834,943	+		DZA65_RS17815	0.73	+0.8
3,834,943	+		DZA65_RS17815	0.73	-0.8
3,834,943	+		DZA65_RS17815	0.73	+0.1
3,834,944	-		DZA65_RS17815	0.73	-1.8
3,834,944	-		DZA65_RS17815	0.73	+0.0
3,834,944	-		DZA65_RS17815	0.73	-0.8
3,835,072	-				-1.4
3,835,114	+				-0.4
3,835,114	+				+0.5
3,835,114	+				-0.4
3,835,114	+				-0.2
3,835,114	+				-0.9
3,835,115	-				-1.4
3,835,115	-				-0.4
3,835,115	-				+0.0
3,835,115	-				+1.1
3,835,132	+				+0.1
3,835,132	+				-1.3
3,835,270	+		DZA65_RS17820	0.18	-1.0
3,835,270	+		DZA65_RS17820	0.18	-1.4
3,835,270	+		DZA65_RS17820	0.18	+0.9
3,835,271	-		DZA65_RS17820	0.18	+1.1
3,835,271	-		DZA65_RS17820	0.18	+0.6
3,835,271	-		DZA65_RS17820	0.18	+0.2
3,835,271	-		DZA65_RS17820	0.18	-0.4
3,835,271	-		DZA65_RS17820	0.18	+0.1
3,835,364	+		DZA65_RS17820	0.29	-1.0
3,835,366	+		DZA65_RS17820	0.30	+2.9
3,835,366	+		DZA65_RS17820	0.30	-0.8
3,835,366	+		DZA65_RS17820	0.30	-0.2
3,835,366	+		DZA65_RS17820	0.30	-0.2
3,835,366	+		DZA65_RS17820	0.30	+0.0
3,835,366	+		DZA65_RS17820	0.30	+0.4
3,835,366	+		DZA65_RS17820	0.30	-0.5
3,835,366	+		DZA65_RS17820	0.30	-0.5
3,835,366	+		DZA65_RS17820	0.30	+1.5
3,835,366	+		DZA65_RS17820	0.30	+0.9
3,835,366	+		DZA65_RS17820	0.30	+0.8
3,835,366	+		DZA65_RS17820	0.30	-2.8
3,835,367	-		DZA65_RS17820	0.30	+0.3
3,835,367	-		DZA65_RS17820	0.30	+0.2
3,835,367	-		DZA65_RS17820	0.30	+0.1
3,835,367	-		DZA65_RS17820	0.30	-0.2
3,835,367	-		DZA65_RS17820	0.30	+0.2
3,835,367	-		DZA65_RS17820	0.30	+1.0
3,835,367	-		DZA65_RS17820	0.30	+0.6
3,835,367	-		DZA65_RS17820	0.30	-0.0
3,835,367	-		DZA65_RS17820	0.30	-1.3
3,835,367	-		DZA65_RS17820	0.30	-0.0
3,835,387	+		DZA65_RS17820	0.32	+1.4
3,835,387	+		DZA65_RS17820	0.32	+1.3
3,835,388	-		DZA65_RS17820	0.32	-0.4
3,835,417	+		DZA65_RS17820	0.36	+0.6
3,835,417	+		DZA65_RS17820	0.36	+0.6
3,835,499	+		DZA65_RS17820	0.46	+0.1
3,835,548	+		DZA65_RS17820	0.53	+0.4
3,835,570	+		DZA65_RS17820	0.55	+0.1
3,835,657	+		DZA65_RS17820	0.66	+0.9
3,835,657	+		DZA65_RS17820	0.66	+0.6
3,835,657	+		DZA65_RS17820	0.66	+1.2
3,835,723	+		DZA65_RS17820	0.75	-2.8
3,835,723	+		DZA65_RS17820	0.75	+0.8
3,835,723	+		DZA65_RS17820	0.75	+0.9
3,835,724	-		DZA65_RS17820	0.75	+0.4
3,835,724	-		DZA65_RS17820	0.75	-0.4
3,835,744	+		DZA65_RS17820	0.77	-0.3
3,835,939	-				-0.1