Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16455

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,563,043	-		DZA65_RS16445	0.16	-0.1
3,563,099	-		DZA65_RS16445	0.22	+1.5
3,563,099	-		DZA65_RS16445	0.22	+0.5
3,563,099	-		DZA65_RS16445	0.22	+1.3
3,563,165	-		DZA65_RS16445	0.31	+0.2
3,563,196	+		DZA65_RS16445	0.34	-1.5
3,563,196	+		DZA65_RS16445	0.34	-0.6
3,563,197	-		DZA65_RS16445	0.34	-1.7
3,563,197	-		DZA65_RS16445	0.34	-0.9
3,563,240	+		DZA65_RS16445	0.40	-0.4
3,563,241	-		DZA65_RS16445	0.40	+0.5
3,563,241	-		DZA65_RS16445	0.40	+0.5
3,563,323	+		DZA65_RS16445	0.50	+0.1
3,563,324	-		DZA65_RS16445	0.50	+0.4
3,563,324	-		DZA65_RS16445	0.50	+0.5
3,563,338	+		DZA65_RS16445	0.52	-0.7
3,563,338	+		DZA65_RS16445	0.52	+0.1
3,563,338	+		DZA65_RS16445	0.52	+0.1
3,563,338	+		DZA65_RS16445	0.52	-1.5
3,563,338	+		DZA65_RS16445	0.52	-1.0
3,563,339	-		DZA65_RS16445	0.52	-1.3
3,563,339	-		DZA65_RS16445	0.52	-0.5
3,563,341	+		DZA65_RS16445	0.52	-0.5
3,563,455	+		DZA65_RS16445	0.66	+0.1
3,563,491	+		DZA65_RS16445	0.70	+0.1
3,563,491	+		DZA65_RS16445	0.70	-1.3
3,563,491	+		DZA65_RS16445	0.70	+0.1
3,563,491	+		DZA65_RS16445	0.70	+0.7
3,563,491	+		DZA65_RS16445	0.70	-0.5
3,563,491	+		DZA65_RS16445	0.70	-0.4
3,563,491	+		DZA65_RS16445	0.70	+0.2
3,563,491	+				-2.1
3,563,491	+		DZA65_RS16445	0.70	-0.1
3,563,491	+		DZA65_RS16445	0.70	-1.9
3,563,491	+		DZA65_RS16445	0.70	+0.3
3,563,492	-		DZA65_RS16445	0.71	-1.9
3,563,492	-		DZA65_RS16445	0.71	-1.0
3,563,492	-		DZA65_RS16445	0.71	-1.0
3,563,492	-		DZA65_RS16445	0.71	-0.4
3,563,492	-		DZA65_RS16445	0.71	+0.2
3,563,492	-		DZA65_RS16445	0.71	+0.2
3,563,492	-		DZA65_RS16445	0.71	-1.3
3,563,492	-		DZA65_RS16445	0.71	+0.3
3,563,492	-		DZA65_RS16445	0.71	+0.2
3,563,492	-		DZA65_RS16445	0.71	-0.5
3,563,492	-		DZA65_RS16445	0.71	-0.5
3,563,492	-		DZA65_RS16445	0.71	-2.4
3,563,492	-		DZA65_RS16445	0.71	+0.3
3,563,492	-		DZA65_RS16445	0.71	-0.4
3,563,492	-		DZA65_RS16445	0.71	-0.4
3,563,511	+		DZA65_RS16445	0.73	-0.7
3,563,511	+		DZA65_RS16445	0.73	+1.3
3,563,511	+		DZA65_RS16445	0.73	+0.5
3,563,511	+		DZA65_RS16445	0.73	-0.5
3,563,511	+		DZA65_RS16445	0.73	-0.8
3,563,511	+		DZA65_RS16445	0.73	+0.3
3,563,511	+		DZA65_RS16445	0.73	+1.2
3,563,512	-		DZA65_RS16445	0.73	+0.9
3,563,512	-		DZA65_RS16445	0.73	-1.1
3,563,513	+		DZA65_RS16445	0.73	-0.7
3,563,513	+		DZA65_RS16445	0.73	-0.1
3,563,513	+		DZA65_RS16445	0.73	-0.9
3,563,513	+		DZA65_RS16445	0.73	+1.5
3,563,513	+		DZA65_RS16445	0.73	-0.1
3,563,513	+		DZA65_RS16445	0.73	+0.9
3,563,514	-		DZA65_RS16445	0.73	-0.0
3,563,514	-		DZA65_RS16445	0.73	+0.5
3,563,514	-		DZA65_RS16445	0.73	-0.1
3,563,514	-		DZA65_RS16445	0.73	-1.4
3,563,514	-		DZA65_RS16445	0.73	-0.3
3,563,693	-				-0.8
3,563,779	+		DZA65_RS16450	0.17	+0.3
3,563,779	+		DZA65_RS16450	0.17	-0.0
3,563,779	+				-1.1
3,563,779	+		DZA65_RS16450	0.17	-1.5
3,563,780	-		DZA65_RS16450	0.18	-0.1
3,563,780	-				+0.5
3,563,780	-		DZA65_RS16450	0.18	-1.1
3,563,802	-		DZA65_RS16450	0.25	-1.2
3,563,821	-		DZA65_RS16450	0.31	+0.2
3,563,856	+		DZA65_RS16450	0.42	-1.4
3,563,856	+		DZA65_RS16450	0.42	-0.5
3,563,856	+		DZA65_RS16450	0.42	+1.5
3,563,856	+		DZA65_RS16450	0.42	-0.1
3,563,857	-		DZA65_RS16450	0.42	+0.5
3,563,857	-		DZA65_RS16450	0.42	-0.5
3,563,857	-		DZA65_RS16450	0.42	+0.1
3,563,857	-		DZA65_RS16450	0.42	-0.8
3,563,857	-		DZA65_RS16450	0.42	-0.1
3,564,061	+				-2.1
3,564,061	+				+0.5
3,564,062	-				+0.1
3,564,062	-				-0.7
3,564,062	-				-0.4
3,564,064	+				-0.3
3,564,064	+				+0.8
3,564,064	+				+0.2
3,564,064	+				+0.2
3,564,065	-				-0.0
3,564,065	-				-0.2
3,564,230	+		DZA65_RS16455	0.12	+0.9
3,564,241	+		DZA65_RS16455	0.12	-2.5
3,564,242	-		DZA65_RS16455	0.12	+2.2
3,564,242	-		DZA65_RS16455	0.12	+1.0
3,564,260	-		DZA65_RS16455	0.13	-0.5
3,564,387	+		DZA65_RS16455	0.21	-0.5
3,564,387	+		DZA65_RS16455	0.21	-0.2
3,564,387	+		DZA65_RS16455	0.21	-0.3
3,564,387	+		DZA65_RS16455	0.21	+0.5
3,564,388	-		DZA65_RS16455	0.21	-1.1
3,564,388	-		DZA65_RS16455	0.21	-0.6
3,564,388	-		DZA65_RS16455	0.21	+0.5
3,564,388	-		DZA65_RS16455	0.21	-1.1
3,564,388	-		DZA65_RS16455	0.21	+0.0
3,564,388	-		DZA65_RS16455	0.21	+1.8
3,564,388	-		DZA65_RS16455	0.21	+0.5
3,564,388	-		DZA65_RS16455	0.21	+0.5
3,564,416	+		DZA65_RS16455	0.23	+0.4
3,564,416	+		DZA65_RS16455	0.23	-0.2
3,564,417	-		DZA65_RS16455	0.23	+1.0
3,564,417	-		DZA65_RS16455	0.23	-0.1
3,564,417	-		DZA65_RS16455	0.23	-0.9
3,564,417	-		DZA65_RS16455	0.23	+0.3
3,564,530	+		DZA65_RS16455	0.30	+0.5
3,564,531	-		DZA65_RS16455	0.30	+0.2
3,564,531	-		DZA65_RS16455	0.30	+1.3
3,564,643	+		DZA65_RS16455	0.36	+0.6
3,564,643	+		DZA65_RS16455	0.36	+0.5
3,564,643	+		DZA65_RS16455	0.36	-1.7
3,564,644	-		DZA65_RS16455	0.36	+0.2
3,564,644	-		DZA65_RS16455	0.36	-0.5
3,564,644	-		DZA65_RS16455	0.36	-1.1
3,564,644	-		DZA65_RS16455	0.36	+0.5
3,564,644	-		DZA65_RS16455	0.36	-0.8
3,564,662	+		DZA65_RS16455	0.38	-0.9
3,564,662	+		DZA65_RS16455	0.38	-2.5
3,564,662	+		DZA65_RS16455	0.38	-0.8
3,564,662	+		DZA65_RS16455	0.38	+0.1
3,564,691	-		DZA65_RS16455	0.39	-1.4
3,564,691	-		DZA65_RS16455	0.39	-1.4
3,564,700	+		DZA65_RS16455	0.40	-0.2
3,564,700	+		DZA65_RS16455	0.40	-0.3
3,564,730	+		DZA65_RS16455	0.42	-1.3
3,564,732	+		DZA65_RS16455	0.42	-0.4
3,564,732	+		DZA65_RS16455	0.42	-1.1
3,564,732	+		DZA65_RS16455	0.42	+0.9
3,564,732	+				+0.5
3,564,732	+		DZA65_RS16455	0.42	-0.2
3,564,732	+		DZA65_RS16455	0.42	-0.7
3,564,732	+		DZA65_RS16455	0.42	-0.8
3,564,732	+		DZA65_RS16455	0.42	-2.4
3,564,732	+		DZA65_RS16455	0.42	-0.4
3,564,732	+		DZA65_RS16455	0.42	+0.2
3,564,732	+		DZA65_RS16455	0.42	+0.5
3,564,732	+		DZA65_RS16455	0.42	+1.3
3,564,733	-		DZA65_RS16455	0.42	+1.3
3,564,733	-		DZA65_RS16455	0.42	-0.5
3,564,733	-		DZA65_RS16455	0.42	-0.4
3,564,733	-		DZA65_RS16455	0.42	-2.1
3,564,733	-		DZA65_RS16455	0.42	-1.1
3,564,733	-		DZA65_RS16455	0.42	+0.0
3,564,733	-		DZA65_RS16455	0.42	-0.9
3,564,733	-		DZA65_RS16455	0.42	-0.0
3,564,733	-		DZA65_RS16455	0.42	+0.5
3,564,733	-		DZA65_RS16455	0.42	-1.5
3,564,733	-		DZA65_RS16455	0.42	-0.4
3,564,733	-		DZA65_RS16455	0.42	+0.2
3,564,733	-		DZA65_RS16455	0.42	+0.3
3,564,733	-		DZA65_RS16455	0.42	-0.9
3,564,750	-		DZA65_RS16455	0.43	+0.1
3,564,857	+		DZA65_RS16455	0.49	-0.8
3,564,858	-		DZA65_RS16455	0.49	-0.1
3,564,858	-		DZA65_RS16455	0.49	+0.5
3,564,897	+		DZA65_RS16455	0.52	-1.1
3,564,898	-		DZA65_RS16455	0.52	+1.6
3,564,934	+		DZA65_RS16455	0.54	-0.5
3,564,968	+		DZA65_RS16455	0.56	+0.3
3,564,968	+		DZA65_RS16455	0.56	+0.1
3,564,969	-		DZA65_RS16455	0.56	+0.3
3,564,969	-		DZA65_RS16455	0.56	+0.2
3,564,969	-		DZA65_RS16455	0.56	+0.5
3,564,969	-		DZA65_RS16455	0.56	+0.5
3,564,973	+		DZA65_RS16455	0.56	+0.6
3,564,973	+		DZA65_RS16455	0.56	+0.8
3,564,973	+		DZA65_RS16455	0.56	-0.9
3,564,974	-		DZA65_RS16455	0.56	+0.1
3,564,997	-		DZA65_RS16455	0.58	-0.3
3,564,999	+		DZA65_RS16455	0.58	+0.5
3,565,009	+		DZA65_RS16455	0.58	-0.3
3,565,009	+		DZA65_RS16455	0.58	+1.3
3,565,009	+		DZA65_RS16455	0.58	+0.4
3,565,010	-		DZA65_RS16455	0.58	-0.5
3,565,010	-		DZA65_RS16455	0.58	+0.6
3,565,010	-		DZA65_RS16455	0.58	+0.8
3,565,010	-		DZA65_RS16455	0.58	+0.5
3,565,010	-		DZA65_RS16455	0.58	-1.1
3,565,042	+		DZA65_RS16455	0.60	-0.5
3,565,054	+		DZA65_RS16455	0.61	-0.4
3,565,054	+		DZA65_RS16455	0.61	-0.3
3,565,093	+		DZA65_RS16455	0.63	-1.2
3,565,095	+		DZA65_RS16455	0.63	+1.3
3,565,095	+		DZA65_RS16455	0.63	+0.1
3,565,095	+		DZA65_RS16455	0.63	-0.4
3,565,095	+		DZA65_RS16455	0.63	+0.8
3,565,095	+		DZA65_RS16455	0.63	-0.5
3,565,095	+		DZA65_RS16455	0.63	+1.1
3,565,096	-		DZA65_RS16455	0.63	+0.5
3,565,096	-		DZA65_RS16455	0.63	-0.3
3,565,096	-		DZA65_RS16455	0.63	+0.8
3,565,096	-		DZA65_RS16455	0.63	-0.3
3,565,096	-		DZA65_RS16455	0.63	-0.3
3,565,096	-		DZA65_RS16455	0.63	-1.1
3,565,096	-		DZA65_RS16455	0.63	+1.2
3,565,160	+		DZA65_RS16455	0.67	-0.5
3,565,160	+		DZA65_RS16455	0.67	+0.5
3,565,160	+		DZA65_RS16455	0.67	+1.0
3,565,198	+		DZA65_RS16455	0.70	-2.4
3,565,198	+		DZA65_RS16455	0.70	-0.1
3,565,199	-		DZA65_RS16455	0.70	-1.1
3,565,199	-		DZA65_RS16455	0.70	+0.9
3,565,222	+		DZA65_RS16455	0.71	-2.3
3,565,223	-		DZA65_RS16455	0.71	-0.1
3,565,233	+		DZA65_RS16455	0.72	+1.1
3,565,233	+		DZA65_RS16455	0.72	-2.1
3,565,233	+		DZA65_RS16455	0.72	-0.9
3,565,233	+		DZA65_RS16455	0.72	+0.7
3,565,233	+		DZA65_RS16455	0.72	-0.3
3,565,234	-		DZA65_RS16455	0.72	-1.4
3,565,265	-		DZA65_RS16455	0.74	-1.1
3,565,286	+		DZA65_RS16455	0.75	-0.8
3,565,287	-		DZA65_RS16455	0.75	+0.7
3,565,287	-		DZA65_RS16455	0.75	-0.1
3,565,287	-		DZA65_RS16455	0.75	-0.7
3,565,308	+		DZA65_RS16455	0.76	+1.2
3,565,308	+		DZA65_RS16455	0.76	-0.1
3,565,308	+		DZA65_RS16455	0.76	-0.3
3,565,308	+		DZA65_RS16455	0.76	-0.7
3,565,308	+		DZA65_RS16455	0.76	+0.6
3,565,309	-		DZA65_RS16455	0.76	-0.5
3,565,309	-		DZA65_RS16455	0.76	-0.5
3,565,309	-		DZA65_RS16455	0.76	+0.9
3,565,326	+		DZA65_RS16455	0.77	-0.0
3,565,419	+		DZA65_RS16455	0.83	+0.7
3,565,420	-		DZA65_RS16455	0.83	+0.5
3,565,420	-		DZA65_RS16455	0.83	-2.1
3,565,420	-		DZA65_RS16455	0.83	-3.0
3,565,420	-		DZA65_RS16455	0.83	-0.3
3,565,478	+		DZA65_RS16455	0.86	-0.1
3,565,479	-		DZA65_RS16455	0.86	+0.5
3,565,539	-				+0.5
3,565,539	-				+0.5
3,565,616	-				-0.1
3,565,616	-				+0.9
3,565,616	-				+1.2
3,565,675	+				+0.6
3,565,675	+				+0.3
3,565,676	-				-1.5
3,565,676	-				+1.5
3,565,678	+				+0.6
3,565,678	+				-1.5
3,565,679	-				+3.0
3,565,679	-				-0.1
3,565,679	-				+1.3
3,565,679	-				+0.9
3,565,679	-				-0.2
3,565,679	-				+0.1
3,565,722	-				+0.7
3,565,733	+				+0.8
3,565,733	+				-0.3
3,565,734	-				+1.8
3,565,734	-				-1.0
3,565,753	+		DZA65_RS16460	0.14	+0.5
3,565,753	+		DZA65_RS16460	0.14	+0.8
3,565,753	+		DZA65_RS16460	0.14	+0.8
3,565,753	+		DZA65_RS16460	0.14	+0.5
3,565,754	-		DZA65_RS16460	0.14	+1.0
3,565,915	+				+0.8
3,565,915	+				+0.2
3,565,915	+				-0.3
3,565,915	+				+0.7
3,565,915	+				+0.3
3,565,916	-				+0.9
3,565,916	-				-0.4
3,565,916	-				+0.7
3,565,930	+				+1.0
3,565,930	+				-0.9
3,565,930	+				+1.2
3,565,930	+				+1.5
3,565,930	+				+2.0
3,565,930	+				+0.6
3,565,930	+				+2.1
3,565,930	+				+1.6
3,565,930	+				-1.7
3,565,930	+				+0.8
3,565,930	+				+1.1
3,565,930	+				+1.5
3,565,930	+				+0.2
3,565,930	+				+1.5
3,565,930	+				+0.5
3,565,930	+				+1.1
3,565,930	+				+1.3
3,565,930	+				+1.1
3,565,931	-				+0.7
3,565,931	-				+1.0
3,565,931	-				+0.2
3,565,931	-				+0.5
3,565,931	-				-0.3
3,565,931	-				+1.2
3,565,931	-				+1.5
3,565,931	-				-0.3
3,565,931	-				-0.6
3,565,931	-				-0.8
3,565,931	-				+0.3
3,565,931	-				-0.5
3,565,931	-				-0.6
3,565,931	-				+1.5
3,565,931	-				+0.5
3,565,931	-				+0.2
3,565,931	-				-0.8
3,565,931	-				-0.4
3,565,931	-				-1.2
3,565,931	-				-0.2
3,565,934	+				+2.5
3,565,934	+				-0.1
3,565,934	+				+0.4
3,565,934	+				-2.9
3,565,935	-				-1.4
3,565,935	-				-0.5
3,565,935	-				-0.5
3,565,935	-				+0.5
3,565,935	-				-1.7
3,565,935	-				+1.5
3,565,936	+				+1.4
3,565,936	+				+0.2
3,565,936	+				-0.5
3,565,937	-				+0.0
3,565,937	-				-0.5
3,565,937	-				+0.0
3,566,141	-				+0.1
3,566,151	+				+2.0
3,566,151	+				+0.1
3,566,152	-				+1.7
3,566,152	-				-0.0
3,566,152	-				+0.7
3,566,189	+				-0.4
3,566,189	+				-0.2
3,566,189	+				+0.8
3,566,189	+				-0.4
3,566,189	+				-1.0
3,566,189	+				-2.0
3,566,189	+				+0.3
3,566,190	-				-0.2
3,566,190	-				-0.5
3,566,190	-				+0.3
3,566,190	-				+0.0
3,566,242	+				-1.7
3,566,269	-				+0.1
3,566,392	+				-2.4
3,566,411	+				+1.5
3,566,420	+				-0.9
3,566,427	+				+0.2
3,566,427	+				-0.3
3,566,428	-				+0.5
3,566,437	-				-0.2
3,566,445	+				-2.9
3,566,445	+				+0.6
3,566,445	+				+0.2
3,566,446	-				+0.7
3,566,446	-				+0.0
3,566,492	+				+0.2
3,566,492	+				-0.1
3,566,492	+				+1.0
3,566,493	-				+2.8
3,566,493	-				-1.7
3,566,493	-				+0.1
3,566,493	-				-0.8
3,566,500	+				-0.1
3,566,500	+				-0.6
3,566,500	+				+0.5
3,566,500	+				+0.5
3,566,500	+				-0.8
3,566,500	+				+0.8
3,566,500	+				-0.6
3,566,501	-				-0.1
3,566,501	-				+2.0
3,566,501	-				+0.1
3,566,501	-				-0.4
3,566,501	-				-0.3
3,566,504	+				-0.9
3,566,504	+				+0.1
3,566,504	+				-0.5
3,566,504	+				+0.2
3,566,504	+				-0.4
3,566,505	-				+0.5
3,566,505	-				+0.2
3,566,505	-				-0.3
3,566,505	-				-0.5
3,566,505	-				-0.1
3,566,505	-				-0.3
3,566,505	-				+0.2
3,566,505	-				+2.5
3,566,505	-				+0.3
3,566,505	-				+0.1
3,566,505	-				-0.6
3,566,563	+		DZA65_RS16465	0.11	+0.3
3,566,564	-		DZA65_RS16465	0.11	+0.1
3,566,597	+		DZA65_RS16465	0.13	-0.1
3,566,611	+		DZA65_RS16465	0.14	-0.5
3,566,612	-		DZA65_RS16465	0.14	-0.2
3,566,678	+		DZA65_RS16465	0.18	+0.6
3,566,678	+		DZA65_RS16465	0.18	+0.0
3,566,678	+		DZA65_RS16465	0.18	-0.1
3,566,678	+		DZA65_RS16465	0.18	-1.4
3,566,678	+		DZA65_RS16465	0.18	+0.9
3,566,678	+		DZA65_RS16465	0.18	+0.1
3,566,679	-		DZA65_RS16465	0.19	-0.5
3,566,695	-		DZA65_RS16465	0.20	-0.0