Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16080

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Norland
				remove
3,484,464	-	DZA65_RS16070	0.23	+0.4
3,484,471	+	DZA65_RS16070	0.25	+0.4
3,484,471	+	DZA65_RS16070	0.25	-0.3
3,484,471	+	DZA65_RS16070	0.25	+0.2
3,484,491	+	DZA65_RS16070	0.31	+1.2
3,484,491	+	DZA65_RS16070	0.31	-1.2
3,484,491	+	DZA65_RS16070	0.31	+0.4
3,484,492	-	DZA65_RS16070	0.31	-1.0
3,484,492	-			+0.4
3,484,685	+	DZA65_RS16070	0.84	+0.4
3,484,685	+	DZA65_RS16070	0.84	-0.3
3,484,685	+	DZA65_RS16070	0.84	+1.2
3,484,685	+	DZA65_RS16070	0.84	-0.8
3,484,685	+	DZA65_RS16070	0.84	+2.2
3,484,685	+	DZA65_RS16070	0.84	-0.4
3,484,685	+	DZA65_RS16070	0.84	+2.2
3,484,685	+	DZA65_RS16070	0.84	-0.6
3,484,685	+	DZA65_RS16070	0.84	+0.7
3,484,685	+			+1.2
3,484,685	+	DZA65_RS16070	0.84	+0.1
3,484,685	+	DZA65_RS16070	0.84	-0.1
3,484,685	+	DZA65_RS16070	0.84	+0.2
3,484,685	+			+0.0
3,484,685	+	DZA65_RS16070	0.84	-0.0
3,484,685	+	DZA65_RS16070	0.84	-2.1
3,484,686	-	DZA65_RS16070	0.85	-1.3
3,484,686	-	DZA65_RS16070	0.85	+0.1
3,484,686	-	DZA65_RS16070	0.85	+0.9
3,484,686	-	DZA65_RS16070	0.85	+1.4
3,484,686	-	DZA65_RS16070	0.85	+1.2
3,484,686	-	DZA65_RS16070	0.85	-1.3
3,484,686	-	DZA65_RS16070	0.85	-3.3
3,484,686	-	DZA65_RS16070	0.85	-0.8
3,484,686	-	DZA65_RS16070	0.85	-0.3
3,484,686	-	DZA65_RS16070	0.85	-1.9
3,484,686	-			+5.0
3,484,686	-	DZA65_RS16070	0.85	-0.3
3,484,686	-	DZA65_RS16070	0.85	-0.1
3,484,686	-	DZA65_RS16070	0.85	+0.3
3,484,686	-	DZA65_RS16070	0.85	-0.9
3,484,686	-	DZA65_RS16070	0.85	-0.0
3,484,686	-	DZA65_RS16070	0.85	-0.2
3,484,686	-	DZA65_RS16070	0.85	-0.2
3,484,686	-	DZA65_RS16070	0.85	-0.8
3,484,686	-	DZA65_RS16070	0.85	-0.2
3,484,687	+	DZA65_RS16070	0.85	+0.4
3,484,687	+	DZA65_RS16070	0.85	+0.2
3,484,687	+	DZA65_RS16070	0.85	+0.2
3,484,819	+	DZA65_RS16075	0.13	-0.6
3,484,819	+	DZA65_RS16075	0.13	-0.5
3,484,820	-	DZA65_RS16075	0.13	-0.8
3,484,855	+	DZA65_RS16075	0.19	-2.4
3,484,855	+	DZA65_RS16075	0.19	+0.1
3,484,855	+	DZA65_RS16075	0.19	+1.4
3,484,855	+	DZA65_RS16075	0.19	+1.4
3,484,856	-	DZA65_RS16075	0.20	-0.6
3,484,856	-	DZA65_RS16075	0.20	-0.0
3,484,907	-	DZA65_RS16075	0.29	+0.1
3,484,923	-	DZA65_RS16075	0.32	+0.7
3,484,935	+	DZA65_RS16075	0.34	-0.8
3,484,977	+	DZA65_RS16075	0.42	+1.0
3,484,978	-	DZA65_RS16075	0.42	+1.7
3,484,978	-	DZA65_RS16075	0.42	+0.7
3,485,003	-	DZA65_RS16075	0.47	-1.7
3,485,003	-	DZA65_RS16075	0.47	-0.1
3,485,053	-	DZA65_RS16075	0.56	+1.1
3,485,085	-	DZA65_RS16075	0.62	-0.6
3,485,221	+	DZA65_RS16075	0.88	+0.3
3,485,221	+	DZA65_RS16075	0.88	-0.5
3,485,221	+	DZA65_RS16075	0.88	-1.6
3,485,222	-	DZA65_RS16075	0.88	-1.6
3,485,222	-	DZA65_RS16075	0.88	-0.8
3,485,222	-	DZA65_RS16075	0.88	-1.0
3,485,222	-	DZA65_RS16075	0.88	+2.4
3,485,222	-	DZA65_RS16075	0.88	+0.6
3,485,276	+			-1.0
3,485,276	+			-2.6
3,485,276	+			-0.8
3,485,276	+			+0.8
3,485,277	-			-1.9
3,485,277	-			-0.4
3,485,277	-			-0.1
3,485,277	-			+0.1
3,485,277	-			-0.2
3,485,319	+			+0.3
3,485,319	+			-1.2
3,485,320	-			+0.5
3,485,324	+			+1.7
3,485,324	+			+0.4
3,485,324	+			-0.6
3,485,324	+			-0.4
3,485,324	+			+0.2
3,485,325	-			+0.6
3,485,325	-			+0.8
3,485,325	-			-0.1
3,485,325	-			-1.9
3,485,325	-			-0.6
3,485,325	-			-0.7
3,485,325	-			+0.8
3,485,325	-			+0.1
3,485,349	+			+0.2
3,485,349	+			-0.6
3,485,349	+			-0.2
3,485,350	-			+0.1
3,485,353	+			-0.6
3,485,353	+			+1.4
3,485,353	+			-1.6
3,485,353	+			+0.6
3,485,353	+			+0.9
3,485,353	+			+0.2
3,485,353	+			-0.2
3,485,353	+			-2.2
3,485,354	-			+0.4
3,485,354	-			+0.7
3,485,354	-			-0.7
3,485,354	-			+1.0
3,485,421	-			+0.4
3,485,421	-			+0.4
3,485,664	+			-1.9
3,485,675	-			-1.4
3,485,675	-			-0.8
3,485,688	+			-1.9
3,485,688	+			-0.6
3,485,688	+			-0.4
3,485,689	-			-1.2
3,485,689	-			+2.0
3,485,689	-			+0.2
3,485,693	+			-1.9
3,485,694	-			-0.8
3,485,702	+			+0.6
3,485,702	+			-2.0
3,485,702	+			+0.6
3,485,702	+			-0.4
3,485,702	+			-0.4
3,485,703	-			-0.4
3,485,703	-			+0.8
3,485,703	-			+1.1
3,485,703	-			-1.6
3,485,706	+			+0.5
3,485,706	+			+0.6
3,485,706	+			+1.2
3,485,707	-			+0.7
3,485,707	-			+0.5
3,485,707	-			+0.4
3,485,707	-			-0.6
3,485,707	-			+1.7
3,485,707	-			+0.2
3,485,707	-			-1.2
3,485,707	-			+0.4
3,485,715	+			-0.4
3,485,722	+			-0.1
3,485,722	+			-1.4
3,485,722	+			-0.2
3,485,722	+			+0.1
3,485,722	+			+0.9
3,485,722	+			+1.4
3,485,723	-			-1.4
3,485,723	-			-1.7
3,485,723	-			-0.1
3,485,737	-			+0.6
3,485,753	+			+0.8
3,485,770	-			+0.2
3,485,772	+			+1.2
3,485,772	+			-1.2
3,485,773	-			+0.0
3,485,784	+			-1.0
3,485,784	+			-1.6
3,485,785	-			-0.8
3,485,785	-			-0.4
3,485,785	-			+1.4
3,485,785	-			-1.6
3,485,785	-			-0.5
3,485,826	+			-0.9
3,485,826	+			-1.2
3,485,827	-			+0.4
3,485,831	+			-2.4
3,485,831	+			+1.0
3,485,831	+			-0.2
3,485,831	+			-2.6
3,485,831	+			+0.4
3,485,831	+			-0.3
3,485,831	+			-0.3
3,485,832	-			+0.5
3,485,832	-			-1.2
3,485,832	-			-0.5
3,485,832	-			-0.4
3,485,838	+			-0.2
3,485,838	+			+0.4
3,485,838	+			+1.3
3,485,839	-	DZA65_RS16085	0.10	-0.7
3,485,839	-	DZA65_RS16085	0.10	-0.7
3,485,839	-	DZA65_RS16085	0.10	-0.2
3,485,839	-	DZA65_RS16085	0.10	+0.1
3,485,839	-	DZA65_RS16085	0.10	-0.1
3,485,839	-	DZA65_RS16085	0.10	-1.6
3,485,841	+	DZA65_RS16085	0.10	+1.1
3,485,841	+	DZA65_RS16085	0.10	-0.6
3,485,842	-	DZA65_RS16085	0.10	+0.2
3,485,842	-	DZA65_RS16085	0.10	+0.3
3,485,845	+	DZA65_RS16085	0.11	-1.3
3,485,845	+	DZA65_RS16085	0.11	-0.6
3,485,846	-			+0.8
3,485,846	-	DZA65_RS16085	0.11	-0.3
3,485,951	-	DZA65_RS16085	0.27	-0.9
3,485,971	+	DZA65_RS16085	0.30	+0.4
3,485,971	+	DZA65_RS16085	0.30	-0.8
3,485,971	+	DZA65_RS16085	0.30	+0.2
3,485,971	+	DZA65_RS16085	0.30	-0.1
3,485,972	-	DZA65_RS16085	0.30	+0.1
3,485,972	-	DZA65_RS16085	0.30	+0.6
3,485,972	-	DZA65_RS16085	0.30	+1.5
3,486,028	-	DZA65_RS16085	0.39	-0.6
3,486,034	+	DZA65_RS16085	0.40	-1.6
3,486,034	+	DZA65_RS16085	0.40	+0.0
3,486,035	-	DZA65_RS16085	0.40	+1.3
3,486,035	-	DZA65_RS16085	0.40	+0.0
3,486,037	-	DZA65_RS16085	0.40	+1.7
3,486,053	+	DZA65_RS16085	0.42	-0.7
3,486,053	+	DZA65_RS16085	0.42	-1.7
3,486,053	+	DZA65_RS16085	0.42	-0.4
3,486,054	-	DZA65_RS16085	0.43	-0.5
3,486,054	-	DZA65_RS16085	0.43	+0.8
3,486,087	+	DZA65_RS16085	0.48	-0.6
3,486,087	+	DZA65_RS16085	0.48	+0.1
3,486,088	-	DZA65_RS16085	0.48	+0.4
3,486,088	-	DZA65_RS16085	0.48	-0.6
3,486,139	+	DZA65_RS16085	0.55	+0.4
3,486,277	-	DZA65_RS16085	0.76	-0.4
3,486,277	-	DZA65_RS16085	0.76	+0.6
3,486,277	-	DZA65_RS16085	0.76	+0.1
3,486,312	+	DZA65_RS16085	0.82	-1.0
3,486,312	+	DZA65_RS16085	0.82	+1.4
3,486,312	+	DZA65_RS16085	0.82	-0.8
3,486,312	+	DZA65_RS16085	0.82	+0.8
3,486,312	+	DZA65_RS16085	0.82	-1.1
3,486,312	+	DZA65_RS16085	0.82	-0.3
3,486,313	-	DZA65_RS16085	0.82	+0.3
3,486,313	-	DZA65_RS16085	0.82	+1.1
3,486,313	-	DZA65_RS16085	0.82	+0.1
3,486,343	+	DZA65_RS16085	0.86	+2.2
3,486,343	+	DZA65_RS16085	0.86	-0.3
3,486,343	+	DZA65_RS16085	0.86	+0.4
3,486,343	+	DZA65_RS16085	0.86	+1.0
3,486,344	-	DZA65_RS16085	0.87	+0.4
3,486,344	-	DZA65_RS16085	0.87	-0.5
3,486,344	-	DZA65_RS16085	0.87	+0.2
3,486,344	-	DZA65_RS16085	0.87	+0.0
3,486,344	-	DZA65_RS16085	0.87	-1.2
3,486,344	-	DZA65_RS16085	0.87	-0.1
3,486,344	-	DZA65_RS16085	0.87	-0.4
3,486,367	+			+0.5
3,486,367	+			+0.1
3,486,367	+			-0.0
3,486,367	+			-0.2
3,486,367	+			+1.0
3,486,367	+			+0.9
3,486,367	+			-0.8
3,486,367	+			-0.3
3,486,368	-			+2.2
3,486,368	-			+0.8
3,486,368	-			-1.9
3,486,368	-			-0.1
3,486,368	-			+0.4
3,486,368	-			+0.0
3,486,379	+			+0.1
3,486,379	+			+0.2
3,486,379	+			-0.3
3,486,379	+			-1.9
3,486,380	-			+0.4
3,486,380	-			-0.6
3,486,380	-			-0.3
3,486,380	-			+0.5
3,486,380	-			+0.4
3,486,380	-			-0.3
3,486,451	+			+0.7
3,486,514	+			+0.4

Or see this region's nucleotide sequence