Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14625

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,181,357	+				+0.3
3,181,358	-				-2.9
3,181,376	-				+0.5
3,181,384	-				-1.1
3,181,386	+				-0.2
3,181,386	+				-0.0
3,181,386	+				+0.3
3,181,387	-				-0.6
3,181,387	-				-0.2
3,181,387	-				-0.6
3,181,387	-				-0.0
3,181,387	-				+1.1
3,181,387	-				+1.3
3,181,387	-				+0.1
3,181,407	-				+0.3
3,181,407	-				+0.2
3,181,407	-				+0.3
3,181,407	-				+0.8
3,181,415	+				-1.4
3,181,416	-				-1.7
3,181,416	-				-0.5
3,181,419	-				-0.6
3,181,419	-				+0.2
3,181,430	+				+0.0
3,181,431	-				+0.3
3,181,431	-				+0.0
3,181,434	+				-0.5
3,181,434	+				-0.7
3,181,435	-				-0.8
3,181,487	+				-0.4
3,181,488	-				-1.5
3,181,488	-				+0.2
3,181,519	-				-1.0
3,181,519	-				+0.4
3,181,587	+				+1.2
3,181,588	-				+0.7
3,181,680	+		DZA65_RS14620	0.24	-0.4
3,181,680	+		DZA65_RS14620	0.24	-1.1
3,181,680	+		DZA65_RS14620	0.24	+0.5
3,181,680	+		DZA65_RS14620	0.24	+0.7
3,181,681	-		DZA65_RS14620	0.24	+1.2
3,181,681	-		DZA65_RS14620	0.24	-0.7
3,181,681	-		DZA65_RS14620	0.24	-0.3
3,181,681	-		DZA65_RS14620	0.24	-0.2
3,181,681	-		DZA65_RS14620	0.24	+0.3
3,181,695	+		DZA65_RS14620	0.27	-0.7
3,181,696	-		DZA65_RS14620	0.27	-1.5
3,181,754	+		DZA65_RS14620	0.38	-0.2
3,181,754	+				+0.9
3,181,754	+		DZA65_RS14620	0.38	-0.9
3,181,755	-		DZA65_RS14620	0.38	-0.1
3,181,774	+		DZA65_RS14620	0.42	+0.0
3,181,774	+		DZA65_RS14620	0.42	+0.2
3,181,774	+		DZA65_RS14620	0.42	+1.5
3,181,775	-		DZA65_RS14620	0.42	+0.3
3,181,784	+		DZA65_RS14620	0.44	-0.3
3,181,785	-		DZA65_RS14620	0.44	+0.4
3,181,785	-		DZA65_RS14620	0.44	-1.3
3,181,815	+		DZA65_RS14620	0.50	-0.3
3,181,815	+		DZA65_RS14620	0.50	-0.7
3,181,816	-		DZA65_RS14620	0.50	+0.8
3,181,866	+		DZA65_RS14620	0.60	-0.4
3,181,867	-		DZA65_RS14620	0.60	+0.7
3,181,867	-		DZA65_RS14620	0.60	-0.5
3,181,896	+		DZA65_RS14620	0.65	+0.3
3,181,909	+		DZA65_RS14620	0.68	+0.9
3,181,909	+		DZA65_RS14620	0.68	+0.9
3,181,909	+		DZA65_RS14620	0.68	-0.0
3,181,909	+		DZA65_RS14620	0.68	-1.1
3,181,910	-		DZA65_RS14620	0.68	+0.5
3,181,910	-		DZA65_RS14620	0.68	-1.5
3,181,910	-		DZA65_RS14620	0.68	-0.7
3,181,910	-		DZA65_RS14620	0.68	+0.3
3,181,910	-		DZA65_RS14620	0.68	-0.6
3,181,910	-		DZA65_RS14620	0.68	-2.0
3,181,912	-		DZA65_RS14620	0.68	-0.3
3,181,930	+		DZA65_RS14620	0.72	-0.4
3,181,931	-		DZA65_RS14620	0.72	+0.6
3,181,983	+		DZA65_RS14620	0.82	-2.2
3,181,984	-		DZA65_RS14620	0.82	+0.4
3,181,985	+		DZA65_RS14620	0.82	+0.4
3,181,985	+		DZA65_RS14620	0.82	-0.4
3,181,985	+		DZA65_RS14620	0.82	-0.9
3,181,985	+		DZA65_RS14620	0.82	-2.6
3,181,985	+		DZA65_RS14620	0.82	-1.7
3,181,985	+		DZA65_RS14620	0.82	+0.3
3,181,985	+		DZA65_RS14620	0.82	-0.1
3,181,986	-		DZA65_RS14620	0.83	+0.7
3,181,986	-		DZA65_RS14620	0.83	+0.9
3,181,986	-		DZA65_RS14620	0.83	-0.4
3,181,986	-		DZA65_RS14620	0.83	-1.7
3,181,986	-		DZA65_RS14620	0.83	+0.3
3,181,986	-		DZA65_RS14620	0.83	-0.2
3,181,986	-		DZA65_RS14620	0.83	+0.3
3,181,986	-		DZA65_RS14620	0.83	+0.6
3,181,986	-		DZA65_RS14620	0.83	-1.1
3,181,986	-		DZA65_RS14620	0.83	-0.1
3,181,986	-		DZA65_RS14620	0.83	-1.1
3,181,988	+		DZA65_RS14620	0.83	+1.0
3,181,988	+		DZA65_RS14620	0.83	+0.7
3,181,988	+		DZA65_RS14620	0.83	-0.3
3,181,988	+		DZA65_RS14620	0.83	-0.0
3,181,988	+		DZA65_RS14620	0.83	-0.9
3,181,988	+		DZA65_RS14620	0.83	-0.7
3,181,988	+		DZA65_RS14620	0.83	+0.6
3,181,988	+		DZA65_RS14620	0.83	-1.7
3,181,988	+		DZA65_RS14620	0.83	-0.0
3,181,988	+		DZA65_RS14620	0.83	+0.0
3,181,988	+		DZA65_RS14620	0.83	+0.5
3,181,989	-		DZA65_RS14620	0.83	+0.8
3,181,989	-		DZA65_RS14620	0.83	-0.5
3,181,989	-		DZA65_RS14620	0.83	+0.4
3,181,989	-		DZA65_RS14620	0.83	-2.9
3,181,989	-		DZA65_RS14620	0.83	-0.5
3,181,989	-		DZA65_RS14620	0.83	+0.3
3,181,989	-		DZA65_RS14620	0.83	-1.1
3,181,989	-		DZA65_RS14620	0.83	+0.6
3,181,989	-		DZA65_RS14620	0.83	+0.6
3,182,007	+		DZA65_RS14620	0.87	-1.1
3,182,007	+		DZA65_RS14620	0.87	-0.0
3,182,077	+				-0.9
3,182,096	+				-0.9
3,182,096	+				-1.0
3,182,199	+				+0.3
3,182,218	+				-1.7
3,182,218	+				+0.3
3,182,218	+				+0.6
3,182,242	+				+2.2
3,182,242	+				-2.2
3,182,242	+				-0.6
3,182,242	+				-1.1
3,182,243	-				+0.3
3,182,243	-				-1.1
3,182,243	-				+0.0
3,182,243	-				+0.2
3,182,243	-				-1.5
3,182,246	+				-0.3
3,182,246	+				-0.2
3,182,246	+				-0.1
3,182,246	+				-0.3
3,182,247	-				+0.8
3,182,247	-				+1.5
3,182,247	-				-1.1
3,182,247	-				+0.3
3,182,304	+				-0.3
3,182,305	-				+0.0
3,182,305	-				+1.3
3,182,359	+				-0.3
3,182,359	+				-1.3
3,182,359	+				-0.4
3,182,359	+				+0.4
3,182,359	+				-0.6
3,182,359	+				+0.5
3,182,359	+				+0.7
3,182,359	+				-1.5
3,182,359	+				+0.3
3,182,359	+				+1.1
3,182,360	-				-0.5
3,182,360	-				+0.3
3,182,360	-				-0.7
3,182,360	-				+1.1
3,182,360	-				+1.2
3,182,360	-				+0.7
3,182,573	-		DZA65_RS14625	0.19	-0.4
3,182,619	+		DZA65_RS14625	0.23	+0.0
3,182,619	+		DZA65_RS14625	0.23	-0.5
3,182,620	-		DZA65_RS14625	0.23	+0.3
3,182,626	+		DZA65_RS14625	0.24	+1.2
3,182,626	+		DZA65_RS14625	0.24	+0.6
3,182,626	+		DZA65_RS14625	0.24	-0.6
3,182,666	-		DZA65_RS14625	0.27	+0.6
3,182,666	-		DZA65_RS14625	0.27	-0.1
3,182,666	-		DZA65_RS14625	0.27	-0.6
3,182,667	+		DZA65_RS14625	0.27	-0.2
3,182,667	+		DZA65_RS14625	0.27	+0.6
3,182,667	+		DZA65_RS14625	0.27	+0.3
3,182,667	+		DZA65_RS14625	0.27	+1.0
3,182,667	+		DZA65_RS14625	0.27	+0.6
3,182,668	-		DZA65_RS14625	0.27	-1.0
3,182,668	-		DZA65_RS14625	0.27	-0.3
3,182,668	-				+1.3
3,182,668	-		DZA65_RS14625	0.27	+0.5
3,182,668	-		DZA65_RS14625	0.27	+0.3
3,182,684	-		DZA65_RS14625	0.29	+0.1
3,182,732	+		DZA65_RS14625	0.33	+0.3
3,182,733	-		DZA65_RS14625	0.33	+0.3
3,182,765	+		DZA65_RS14625	0.35	+0.5
3,182,765	+		DZA65_RS14625	0.35	-0.7
3,182,765	+		DZA65_RS14625	0.35	-0.2
3,182,765	+		DZA65_RS14625	0.35	+1.5
3,182,765	+		DZA65_RS14625	0.35	+0.3
3,182,766	-		DZA65_RS14625	0.35	+0.1
3,182,766	-		DZA65_RS14625	0.35	+0.9
3,182,766	-		DZA65_RS14625	0.35	+0.3
3,182,766	-		DZA65_RS14625	0.35	+1.5
3,182,766	-		DZA65_RS14625	0.35	-0.5
3,182,766	-		DZA65_RS14625	0.35	+0.3
3,182,766	-		DZA65_RS14625	0.35	-0.1
3,182,766	-		DZA65_RS14625	0.35	-0.9
3,182,822	+		DZA65_RS14625	0.40	+1.5
3,182,822	+		DZA65_RS14625	0.40	-0.3
3,182,822	+		DZA65_RS14625	0.40	-1.0
3,182,822	+		DZA65_RS14625	0.40	-1.7
3,182,822	+		DZA65_RS14625	0.40	+1.1
3,182,822	+		DZA65_RS14625	0.40	-0.9
3,182,822	+		DZA65_RS14625	0.40	+0.9
3,182,823	-		DZA65_RS14625	0.40	+0.1
3,182,874	-		DZA65_RS14625	0.44	-0.1
3,182,882	+		DZA65_RS14625	0.45	-0.3
3,182,882	+		DZA65_RS14625	0.45	+0.8
3,182,882	+		DZA65_RS14625	0.45	-1.7
3,182,883	-		DZA65_RS14625	0.45	-1.5
3,182,883	-		DZA65_RS14625	0.45	-0.4
3,182,891	+		DZA65_RS14625	0.46	-2.0
3,182,891	+		DZA65_RS14625	0.46	-1.0
3,182,891	+		DZA65_RS14625	0.46	+0.6
3,182,891	+		DZA65_RS14625	0.46	-0.2
3,183,058	+		DZA65_RS14625	0.60	-0.6
3,183,058	+		DZA65_RS14625	0.60	+1.9
3,183,058	+		DZA65_RS14625	0.60	-0.9
3,183,059	-		DZA65_RS14625	0.60	+0.9
3,183,059	-		DZA65_RS14625	0.60	+0.2
3,183,153	+		DZA65_RS14625	0.68	+0.7
3,183,153	+		DZA65_RS14625	0.68	+1.0
3,183,153	+		DZA65_RS14625	0.68	+0.1
3,183,153	+		DZA65_RS14625	0.68	+0.1
3,183,153	+		DZA65_RS14625	0.68	+0.2
3,183,153	+		DZA65_RS14625	0.68	+0.2
3,183,154	-		DZA65_RS14625	0.68	+0.3
3,183,154	-		DZA65_RS14625	0.68	-0.4
3,183,154	-		DZA65_RS14625	0.68	+0.2
3,183,371	+		DZA65_RS14625	0.86	+0.8
3,183,371	+		DZA65_RS14625	0.86	-0.1
3,183,371	+		DZA65_RS14625	0.86	+0.8
3,183,372	-		DZA65_RS14625	0.86	+0.5
3,183,372	-		DZA65_RS14625	0.86	+1.6
3,183,372	-		DZA65_RS14625	0.86	+0.4
3,183,372	-		DZA65_RS14625	0.86	+0.6
3,183,460	+				+1.5
3,183,460	+				+0.1
3,183,461	-				-0.0
3,183,461	-				+0.2
3,183,461	-				+0.2
3,183,461	-				+0.3
3,183,484	+				-0.5
3,183,484	+				-0.3
3,183,484	+				+2.3
3,183,485	-				+0.2
3,183,547	+				-0.4
3,183,547	+				+0.6
3,183,552	-				-1.3
3,183,552	-				-0.1
3,183,552	-				+0.7
3,183,552	-				-0.8
3,183,554	+				-0.7
3,183,554	+				+0.2
3,183,554	+				+0.3
3,183,563	+				-0.1
3,183,563	+				-0.5
3,183,566	+				+0.4
3,183,567	-				-0.0
3,183,574	+				-0.3
3,183,574	+				+2.3
3,183,575	-				+0.3
3,183,575	-				+0.6
3,183,576	+				-0.1
3,183,576	+				+0.8
3,183,576	+				+0.9
3,183,576	+				-1.7
3,183,576	+				-2.2
3,183,576	+				-0.8
3,183,577	-				+0.3
3,183,577	-				-0.2
3,183,577	-				+1.1
3,183,577	-				-1.7
3,183,647	+				-0.8
3,183,647	+				-0.2
3,183,647	+				-0.1
3,183,647	+				-0.5
3,183,647	+				+0.1
3,183,647	+				-1.5
3,183,647	+				+1.2
3,183,647	+				+1.1
3,183,647	+				+0.5
3,183,647	+				+1.0
3,183,647	+				+0.3
3,183,647	+				+0.4
3,183,648	-				-0.1
3,183,648	-				-1.4
3,183,648	-				-1.3
3,183,648	-				-0.7
3,183,727	+				+1.9
3,183,727	+				-0.7
3,183,728	-				-2.3
3,183,787	+		DZA65_RS14630	0.15	+0.9
3,183,787	+		DZA65_RS14630	0.15	+0.8
3,183,788	-		DZA65_RS14630	0.15	+0.4
3,183,788	-		DZA65_RS14630	0.15	-0.2
3,183,788	-		DZA65_RS14630	0.15	+0.3
3,183,818	+		DZA65_RS14630	0.19	-0.5
3,183,913	+		DZA65_RS14630	0.29	+0.4
3,183,913	+		DZA65_RS14630	0.29	+1.2
3,183,931	+		DZA65_RS14630	0.31	-0.2
3,183,931	+		DZA65_RS14630	0.31	+0.3
3,183,932	-		DZA65_RS14630	0.31	-0.4
3,183,932	-		DZA65_RS14630	0.31	-1.1
3,183,932	-		DZA65_RS14630	0.31	+0.1
3,183,932	-		DZA65_RS14630	0.31	-1.9
3,183,974	+		DZA65_RS14630	0.36	-0.1
3,183,975	-		DZA65_RS14630	0.36	+0.3
3,183,975	-		DZA65_RS14630	0.36	+0.1
3,184,155	+		DZA65_RS14630	0.56	+0.2
3,184,155	+		DZA65_RS14630	0.56	-1.3
3,184,156	-		DZA65_RS14630	0.56	+0.5
3,184,156	-		DZA65_RS14630	0.56	+0.3
3,184,188	-		DZA65_RS14630	0.59	+0.0
3,184,218	+		DZA65_RS14630	0.63	-0.1
3,184,218	+		DZA65_RS14630	0.63	-0.2
3,184,218	+		DZA65_RS14630	0.63	-1.5
3,184,218	+		DZA65_RS14630	0.63	+0.1
3,184,218	+		DZA65_RS14630	0.63	-0.6
3,184,218	+		DZA65_RS14630	0.63	-0.7
3,184,218	+		DZA65_RS14630	0.63	-0.3
3,184,218	+		DZA65_RS14630	0.63	-0.2
3,184,218	+		DZA65_RS14630	0.63	-0.4
3,184,218	+		DZA65_RS14630	0.63	+0.3
3,184,218	+		DZA65_RS14630	0.63	+1.6
3,184,218	+		DZA65_RS14630	0.63	+0.1
3,184,218	+		DZA65_RS14630	0.63	-0.1
3,184,219	-		DZA65_RS14630	0.63	-0.1
3,184,219	-		DZA65_RS14630	0.63	-1.0
3,184,219	-				+0.3
3,184,219	-		DZA65_RS14630	0.63	-0.5
3,184,297	+		DZA65_RS14630	0.71	+0.7
3,184,297	+		DZA65_RS14630	0.71	+0.6
3,184,298	-		DZA65_RS14630	0.72	+0.3
3,184,362	+		DZA65_RS14630	0.79	+1.3
3,184,362	+		DZA65_RS14630	0.79	+0.1
3,184,362	+		DZA65_RS14630	0.79	+0.6
3,184,362	+		DZA65_RS14630	0.79	+0.1
3,184,362	+		DZA65_RS14630	0.79	-0.4
3,184,362	+		DZA65_RS14630	0.79	-0.1
3,184,362	+		DZA65_RS14630	0.79	-3.0
3,184,363	-		DZA65_RS14630	0.79	-2.3
3,184,363	-		DZA65_RS14630	0.79	+0.3
3,184,363	-		DZA65_RS14630	0.79	+1.0
3,184,363	-		DZA65_RS14630	0.79	+1.6
3,184,422	+		DZA65_RS14630	0.85	-0.2
3,184,423	-		DZA65_RS14630	0.85	-0.1
3,184,429	+		DZA65_RS14630	0.86	+0.1
3,184,430	-		DZA65_RS14630	0.86	-0.8
3,184,430	-		DZA65_RS14630	0.86	-0.2
3,184,438	+		DZA65_RS14630	0.87	-0.2
3,184,438	+		DZA65_RS14630	0.87	+1.1
3,184,438	+		DZA65_RS14630	0.87	+0.6
3,184,453	+		DZA65_RS14630	0.89	+0.0
3,184,454	-		DZA65_RS14630	0.89	+1.0
3,184,454	-		DZA65_RS14630	0.89	+0.5
3,184,528	+				+0.2
3,184,528	+				-0.7
3,184,528	+				-0.1
3,184,529	-				+1.0
3,184,529	-				+0.3
3,184,529	-				+0.3