Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08965

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08960 and DZA65_RS08965 are separated by 87 nucleotidesDZA65_RS08965 and DZA65_RS08970 are separated by 0 nucleotides DZA65_RS08960: DZA65_RS08960 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,887,617 to 1,888,900 _RS08960 DZA65_RS08965: DZA65_RS08965 - biotin synthase BioB, at 1,888,988 to 1,890,025 _RS08965 DZA65_RS08970: DZA65_RS08970 - 8-amino-7-oxononanoate synthase, at 1,890,026 to 1,891,180 _RS08970 Position (kb) 1888 1889 1890 1891Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1888.062 kb on + strand, within DZA65_RS08960at 1888.062 kb on + strand, within DZA65_RS08960at 1888.063 kb on - strand, within DZA65_RS08960at 1888.063 kb on - strand, within DZA65_RS08960at 1888.063 kb on - strand, within DZA65_RS08960at 1888.181 kb on + strand, within DZA65_RS08960at 1888.181 kb on + strand, within DZA65_RS08960at 1888.181 kb on + strand, within DZA65_RS08960at 1888.181 kb on + strand, within DZA65_RS08960at 1888.181 kb on + strand, within DZA65_RS08960at 1888.182 kb on - strand, within DZA65_RS08960at 1888.182 kb on - strand, within DZA65_RS08960at 1888.182 kb on - strand, within DZA65_RS08960at 1888.182 kb on - strand, within DZA65_RS08960at 1888.199 kb on + strand, within DZA65_RS08960at 1888.222 kb on - strand, within DZA65_RS08960at 1888.233 kb on + strand, within DZA65_RS08960at 1888.234 kb on - strand, within DZA65_RS08960at 1888.234 kb on - strand, within DZA65_RS08960at 1888.234 kb on - strand, within DZA65_RS08960at 1888.234 kb on - strand, within DZA65_RS08960at 1888.398 kb on + strand, within DZA65_RS08960at 1888.398 kb on + strand, within DZA65_RS08960at 1888.399 kb on - strandat 1888.399 kb on - strand, within DZA65_RS08960at 1888.399 kb on - strand, within DZA65_RS08960at 1888.399 kb on - strand, within DZA65_RS08960at 1888.407 kb on + strand, within DZA65_RS08960at 1888.459 kb on + strand, within DZA65_RS08960at 1888.470 kb on + strand, within DZA65_RS08960at 1888.524 kb on + strand, within DZA65_RS08960at 1888.723 kb on + strand, within DZA65_RS08960at 1888.724 kb on - strand, within DZA65_RS08960at 1888.724 kb on - strand, within DZA65_RS08960at 1888.725 kb on + strand, within DZA65_RS08960at 1888.725 kb on + strand, within DZA65_RS08960at 1888.725 kb on + strand, within DZA65_RS08960at 1888.725 kb on + strand, within DZA65_RS08960at 1888.726 kb on - strand, within DZA65_RS08960at 1888.851 kb on + strandat 1888.852 kb on - strandat 1888.852 kb on - strandat 1888.852 kb on - strandat 1888.852 kb on - strandat 1888.852 kb on - strandat 1888.901 kb on - strandat 1888.947 kb on + strandat 1888.947 kb on + strandat 1888.947 kb on + strandat 1888.948 kb on - strandat 1888.948 kb on - strandat 1888.948 kb on - strandat 1888.948 kb on - strandat 1888.948 kb on - strandat 1888.952 kb on + strandat 1888.952 kb on + strandat 1888.953 kb on - strandat 1888.953 kb on - strandat 1889.002 kb on - strandat 1889.124 kb on + strand, within DZA65_RS08965at 1889.162 kb on + strand, within DZA65_RS08965at 1889.162 kb on + strand, within DZA65_RS08965at 1889.163 kb on - strand, within DZA65_RS08965at 1889.163 kb on - strand, within DZA65_RS08965at 1889.315 kb on - strand, within DZA65_RS08965at 1889.435 kb on + strand, within DZA65_RS08965at 1889.435 kb on + strand, within DZA65_RS08965at 1889.436 kb on - strand, within DZA65_RS08965at 1889.436 kb on - strand, within DZA65_RS08965at 1889.436 kb on - strand, within DZA65_RS08965at 1889.443 kb on + strand, within DZA65_RS08965at 1889.443 kb on + strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.468 kb on + strand, within DZA65_RS08965at 1889.469 kb on - strand, within DZA65_RS08965at 1889.476 kb on + strand, within DZA65_RS08965at 1889.476 kb on + strand, within DZA65_RS08965at 1889.477 kb on - strand, within DZA65_RS08965at 1889.477 kb on - strand, within DZA65_RS08965at 1889.477 kb on - strand, within DZA65_RS08965at 1889.477 kb on - strand, within DZA65_RS08965at 1889.491 kb on + strand, within DZA65_RS08965at 1889.491 kb on + strand, within DZA65_RS08965at 1889.492 kb on - strand, within DZA65_RS08965at 1889.495 kb on + strand, within DZA65_RS08965at 1889.495 kb on + strand, within DZA65_RS08965at 1889.495 kb on + strand, within DZA65_RS08965at 1889.496 kb on - strand, within DZA65_RS08965at 1889.496 kb on - strand, within DZA65_RS08965at 1889.512 kb on + strand, within DZA65_RS08965at 1889.512 kb on + strand, within DZA65_RS08965at 1889.513 kb on - strand, within DZA65_RS08965at 1889.513 kb on - strand, within DZA65_RS08965at 1889.759 kb on + strand, within DZA65_RS08965at 1889.759 kb on + strand, within DZA65_RS08965at 1889.759 kb on + strand, within DZA65_RS08965at 1889.759 kb on + strand, within DZA65_RS08965at 1889.760 kb on - strand, within DZA65_RS08965at 1889.760 kb on - strand, within DZA65_RS08965at 1889.760 kb on - strand, within DZA65_RS08965at 1889.760 kb on - strand, within DZA65_RS08965at 1889.760 kb on - strandat 1889.917 kb on + strand, within DZA65_RS08965at 1889.917 kb on + strand, within DZA65_RS08965at 1889.943 kb on - strandat 1890.005 kb on + strandat 1890.005 kb on + strandat 1890.005 kb on + strandat 1890.005 kb on + strandat 1890.005 kb on + strandat 1890.005 kb on + strandat 1890.005 kb on + strandat 1890.006 kb on - strandat 1890.006 kb on - strandat 1890.006 kb on - strandat 1890.006 kb on - strandat 1890.008 kb on + strandat 1890.008 kb on + strandat 1890.008 kb on + strandat 1890.008 kb on + strandat 1890.008 kb on + strandat 1890.009 kb on - strandat 1890.009 kb on - strandat 1890.009 kb on - strandat 1890.009 kb on - strandat 1890.009 kb on - strandat 1890.009 kb on - strandat 1890.009 kb on - strandat 1890.091 kb on - strandat 1890.146 kb on + strand, within DZA65_RS08970at 1890.171 kb on - strand, within DZA65_RS08970at 1890.171 kb on - strand, within DZA65_RS08970at 1890.171 kb on - strand, within DZA65_RS08970at 1890.174 kb on + strand, within DZA65_RS08970at 1890.174 kb on + strand, within DZA65_RS08970at 1890.175 kb on - strand, within DZA65_RS08970at 1890.175 kb on - strand, within DZA65_RS08970at 1890.201 kb on + strand, within DZA65_RS08970at 1890.201 kb on + strand, within DZA65_RS08970at 1890.201 kb on + strand, within DZA65_RS08970at 1890.202 kb on - strandat 1890.231 kb on - strand, within DZA65_RS08970at 1890.269 kb on + strand, within DZA65_RS08970at 1890.269 kb on + strand, within DZA65_RS08970at 1890.269 kb on + strand, within DZA65_RS08970at 1890.271 kb on + strand, within DZA65_RS08970at 1890.271 kb on + strand, within DZA65_RS08970at 1890.271 kb on + strand, within DZA65_RS08970at 1890.271 kb on + strand, within DZA65_RS08970at 1890.271 kb on + strand, within DZA65_RS08970at 1890.272 kb on - strand, within DZA65_RS08970at 1890.272 kb on - strand, within DZA65_RS08970at 1890.340 kb on + strand, within DZA65_RS08970at 1890.340 kb on + strand, within DZA65_RS08970at 1890.340 kb on + strand, within DZA65_RS08970at 1890.340 kb on + strand, within DZA65_RS08970at 1890.340 kb on + strand, within DZA65_RS08970at 1890.340 kb on + strand, within DZA65_RS08970at 1890.340 kb on + strand, within DZA65_RS08970at 1890.341 kb on - strand, within DZA65_RS08970at 1890.341 kb on - strand, within DZA65_RS08970at 1890.341 kb on - strand, within DZA65_RS08970at 1890.465 kb on + strand, within DZA65_RS08970at 1890.466 kb on - strand, within DZA65_RS08970at 1890.466 kb on - strand, within DZA65_RS08970at 1890.481 kb on + strand, within DZA65_RS08970at 1890.482 kb on - strand, within DZA65_RS08970at 1890.682 kb on + strand, within DZA65_RS08970at 1890.682 kb on + strand, within DZA65_RS08970at 1890.682 kb on + strand, within DZA65_RS08970at 1890.682 kb on + strand, within DZA65_RS08970at 1890.682 kb on + strand, within DZA65_RS08970at 1890.682 kb on + strand, within DZA65_RS08970at 1890.683 kb on - strand, within DZA65_RS08970at 1890.683 kb on - strand, within DZA65_RS08970at 1890.785 kb on + strand, within DZA65_RS08970at 1890.785 kb on + strand, within DZA65_RS08970at 1890.785 kb on + strand, within DZA65_RS08970at 1890.786 kb on - strand, within DZA65_RS08970at 1890.786 kb on - strand, within DZA65_RS08970at 1890.815 kb on + strand, within DZA65_RS08970at 1890.816 kb on - strand, within DZA65_RS08970at 1890.816 kb on - strand, within DZA65_RS08970at 1890.816 kb on - strand, within DZA65_RS08970

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,888,062 + DZA65_RS08960 0.35 -1.2
1,888,062 + DZA65_RS08960 0.35 -1.8
1,888,063 - DZA65_RS08960 0.35 +0.7
1,888,063 - DZA65_RS08960 0.35 -1.4
1,888,063 - DZA65_RS08960 0.35 -0.3
1,888,181 + DZA65_RS08960 0.44 +0.2
1,888,181 + DZA65_RS08960 0.44 -0.1
1,888,181 + DZA65_RS08960 0.44 -1.2
1,888,181 + DZA65_RS08960 0.44 -0.5
1,888,181 + DZA65_RS08960 0.44 -0.7
1,888,182 - DZA65_RS08960 0.44 +1.1
1,888,182 - DZA65_RS08960 0.44 +1.2
1,888,182 - DZA65_RS08960 0.44 -1.0
1,888,182 - DZA65_RS08960 0.44 +0.2
1,888,199 + DZA65_RS08960 0.45 -0.6
1,888,222 - DZA65_RS08960 0.47 -0.3
1,888,233 + DZA65_RS08960 0.48 +0.0
1,888,234 - DZA65_RS08960 0.48 -0.2
1,888,234 - DZA65_RS08960 0.48 +1.1
1,888,234 - DZA65_RS08960 0.48 -0.9
1,888,234 - DZA65_RS08960 0.48 -1.4
1,888,398 + DZA65_RS08960 0.61 +0.1
1,888,398 + DZA65_RS08960 0.61 +0.6
1,888,399 - +0.8
1,888,399 - DZA65_RS08960 0.61 +0.9
1,888,399 - DZA65_RS08960 0.61 -1.1
1,888,399 - DZA65_RS08960 0.61 -0.4
1,888,407 + DZA65_RS08960 0.62 -1.1
1,888,459 + DZA65_RS08960 0.66 +0.8
1,888,470 + DZA65_RS08960 0.66 -0.1
1,888,524 + DZA65_RS08960 0.71 -0.8
1,888,723 + DZA65_RS08960 0.86 -1.4
1,888,724 - DZA65_RS08960 0.86 -1.0
1,888,724 - DZA65_RS08960 0.86 -0.6
1,888,725 + DZA65_RS08960 0.86 -0.2
1,888,725 + DZA65_RS08960 0.86 -0.9
1,888,725 + DZA65_RS08960 0.86 -0.4
1,888,725 + DZA65_RS08960 0.86 -0.6
1,888,726 - DZA65_RS08960 0.86 -0.2
1,888,851 + +1.5
1,888,852 - -1.4
1,888,852 - -0.3
1,888,852 - -0.8
1,888,852 - -0.2
1,888,852 - -0.9
1,888,901 - -0.2
1,888,947 + +0.5
1,888,947 + -0.8
1,888,947 + +0.3
1,888,948 - -0.9
1,888,948 - +0.7
1,888,948 - -0.8
1,888,948 - -1.8
1,888,948 - -0.4
1,888,952 + +0.2
1,888,952 + +1.2
1,888,953 - -0.1
1,888,953 - -0.7
1,889,002 - -0.2
1,889,124 + DZA65_RS08965 0.13 -1.0
1,889,162 + DZA65_RS08965 0.17 -0.8
1,889,162 + DZA65_RS08965 0.17 +0.8
1,889,163 - DZA65_RS08965 0.17 -0.6
1,889,163 - DZA65_RS08965 0.17 -0.1
1,889,315 - DZA65_RS08965 0.32 -2.8
1,889,435 + DZA65_RS08965 0.43 -3.0
1,889,435 + DZA65_RS08965 0.43 -0.8
1,889,436 - DZA65_RS08965 0.43 -0.8
1,889,436 - DZA65_RS08965 0.43 -0.3
1,889,436 - DZA65_RS08965 0.43 +0.4
1,889,443 + DZA65_RS08965 0.44 -0.1
1,889,443 + DZA65_RS08965 0.44 +2.3
1,889,444 - DZA65_RS08965 0.44 -0.4
1,889,444 - DZA65_RS08965 0.44 +0.2
1,889,444 - DZA65_RS08965 0.44 +1.0
1,889,444 - DZA65_RS08965 0.44 -0.4
1,889,444 - DZA65_RS08965 0.44 -0.8
1,889,444 - DZA65_RS08965 0.44 +0.2
1,889,444 - DZA65_RS08965 0.44 -3.2
1,889,468 + DZA65_RS08965 0.46 -0.5
1,889,469 - DZA65_RS08965 0.46 -0.1
1,889,476 + DZA65_RS08965 0.47 -0.9
1,889,476 + DZA65_RS08965 0.47 -0.6
1,889,477 - DZA65_RS08965 0.47 -1.1
1,889,477 - DZA65_RS08965 0.47 -0.8
1,889,477 - DZA65_RS08965 0.47 -0.1
1,889,477 - DZA65_RS08965 0.47 -0.8
1,889,491 + DZA65_RS08965 0.48 -0.6
1,889,491 + DZA65_RS08965 0.48 +0.0
1,889,492 - DZA65_RS08965 0.49 -1.2
1,889,495 + DZA65_RS08965 0.49 -1.3
1,889,495 + DZA65_RS08965 0.49 -0.8
1,889,495 + DZA65_RS08965 0.49 -0.5
1,889,496 - DZA65_RS08965 0.49 -1.4
1,889,496 - DZA65_RS08965 0.49 -0.4
1,889,512 + DZA65_RS08965 0.50 -1.0
1,889,512 + DZA65_RS08965 0.50 -1.8
1,889,513 - DZA65_RS08965 0.51 -0.7
1,889,513 - DZA65_RS08965 0.51 -2.6
1,889,759 + DZA65_RS08965 0.74 +0.8
1,889,759 + DZA65_RS08965 0.74 +0.2
1,889,759 + DZA65_RS08965 0.74 -0.4
1,889,759 + DZA65_RS08965 0.74 -1.2
1,889,760 - DZA65_RS08965 0.74 -1.3
1,889,760 - DZA65_RS08965 0.74 -0.2
1,889,760 - DZA65_RS08965 0.74 +0.6
1,889,760 - DZA65_RS08965 0.74 -2.6
1,889,760 - -1.8
1,889,917 + DZA65_RS08965 0.89 -0.8
1,889,917 + DZA65_RS08965 0.89 +0.0
1,889,943 - -0.5
1,890,005 + +1.6
1,890,005 + -0.6
1,890,005 + +0.4
1,890,005 + -0.4
1,890,005 + -1.0
1,890,005 + +0.4
1,890,005 + -0.2
1,890,006 - +0.2
1,890,006 - -1.4
1,890,006 - -1.0
1,890,006 - -1.1
1,890,008 + -1.8
1,890,008 + +0.2
1,890,008 + -0.2
1,890,008 + -0.1
1,890,008 + -1.1
1,890,009 - +2.0
1,890,009 - -0.4
1,890,009 - -0.6
1,890,009 - -0.7
1,890,009 - +0.8
1,890,009 - -1.2
1,890,009 - -0.4
1,890,091 - -0.8
1,890,146 + DZA65_RS08970 0.10 -0.8
1,890,171 - DZA65_RS08970 0.13 +0.0
1,890,171 - DZA65_RS08970 0.13 -0.0
1,890,171 - DZA65_RS08970 0.13 +0.2
1,890,174 + DZA65_RS08970 0.13 +0.2
1,890,174 + DZA65_RS08970 0.13 +1.4
1,890,175 - DZA65_RS08970 0.13 -1.0
1,890,175 - DZA65_RS08970 0.13 +0.9
1,890,201 + DZA65_RS08970 0.15 -0.2
1,890,201 + DZA65_RS08970 0.15 -0.2
1,890,201 + DZA65_RS08970 0.15 +1.0
1,890,202 - +1.2
1,890,231 - DZA65_RS08970 0.18 -0.7
1,890,269 + DZA65_RS08970 0.21 +0.5
1,890,269 + DZA65_RS08970 0.21 -0.4
1,890,269 + DZA65_RS08970 0.21 +0.4
1,890,271 + DZA65_RS08970 0.21 -0.8
1,890,271 + DZA65_RS08970 0.21 -0.6
1,890,271 + DZA65_RS08970 0.21 +1.2
1,890,271 + DZA65_RS08970 0.21 +1.5
1,890,271 + DZA65_RS08970 0.21 -1.2
1,890,272 - DZA65_RS08970 0.21 -0.7
1,890,272 - DZA65_RS08970 0.21 -0.5
1,890,340 + DZA65_RS08970 0.27 +0.3
1,890,340 + DZA65_RS08970 0.27 +1.6
1,890,340 + DZA65_RS08970 0.27 -0.3
1,890,340 + DZA65_RS08970 0.27 -1.4
1,890,340 + DZA65_RS08970 0.27 -0.1
1,890,340 + DZA65_RS08970 0.27 +0.5
1,890,340 + DZA65_RS08970 0.27 -0.0
1,890,341 - DZA65_RS08970 0.27 +0.9
1,890,341 - DZA65_RS08970 0.27 +0.2
1,890,341 - DZA65_RS08970 0.27 -0.2
1,890,465 + DZA65_RS08970 0.38 -1.7
1,890,466 - DZA65_RS08970 0.38 -0.1
1,890,466 - DZA65_RS08970 0.38 -0.3
1,890,481 + DZA65_RS08970 0.39 -0.2
1,890,482 - DZA65_RS08970 0.39 -1.4
1,890,682 + DZA65_RS08970 0.57 +0.2
1,890,682 + DZA65_RS08970 0.57 +0.6
1,890,682 + DZA65_RS08970 0.57 +0.2
1,890,682 + DZA65_RS08970 0.57 -0.6
1,890,682 + DZA65_RS08970 0.57 -0.3
1,890,682 + DZA65_RS08970 0.57 -1.0
1,890,683 - DZA65_RS08970 0.57 -1.6
1,890,683 - DZA65_RS08970 0.57 -2.1
1,890,785 + DZA65_RS08970 0.66 -0.0
1,890,785 + DZA65_RS08970 0.66 -0.8
1,890,785 + DZA65_RS08970 0.66 -0.2
1,890,786 - DZA65_RS08970 0.66 -0.1
1,890,786 - DZA65_RS08970 0.66 +0.2
1,890,815 + DZA65_RS08970 0.68 +0.5
1,890,816 - DZA65_RS08970 0.68 +1.3
1,890,816 - DZA65_RS08970 0.68 -2.1
1,890,816 - DZA65_RS08970 0.68 -2.0

Or see this region's nucleotide sequence