Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06980

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS06975 and DZA65_RS06980 overlap by 11 nucleotidesDZA65_RS06980 and DZA65_RS06985 overlap by 4 nucleotides DZA65_RS06975: DZA65_RS06975 - galactose-1-epimerase, at 1,444,552 to 1,445,634 _RS06975 DZA65_RS06980: DZA65_RS06980 - galactokinase, at 1,445,624 to 1,446,775 _RS06980 DZA65_RS06985: DZA65_RS06985 - galactose-1-phosphate uridylyltransferase, at 1,446,772 to 1,447,824 _RS06985 Position (kb) 1445 1446 1447Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1444.627 kb on + strandat 1444.706 kb on + strand, within DZA65_RS06975at 1444.707 kb on - strand, within DZA65_RS06975at 1444.716 kb on - strand, within DZA65_RS06975at 1444.763 kb on + strand, within DZA65_RS06975at 1444.764 kb on - strand, within DZA65_RS06975at 1444.790 kb on + strand, within DZA65_RS06975at 1444.791 kb on - strand, within DZA65_RS06975at 1445.021 kb on + strand, within DZA65_RS06975at 1445.021 kb on + strand, within DZA65_RS06975at 1445.022 kb on - strand, within DZA65_RS06975at 1445.022 kb on - strand, within DZA65_RS06975at 1445.022 kb on - strand, within DZA65_RS06975at 1445.022 kb on - strand, within DZA65_RS06975at 1445.024 kb on + strand, within DZA65_RS06975at 1445.087 kb on + strand, within DZA65_RS06975at 1445.087 kb on + strand, within DZA65_RS06975at 1445.087 kb on + strand, within DZA65_RS06975at 1445.087 kb on + strand, within DZA65_RS06975at 1445.087 kb on + strand, within DZA65_RS06975at 1445.087 kb on + strand, within DZA65_RS06975at 1445.088 kb on - strand, within DZA65_RS06975at 1445.088 kb on - strand, within DZA65_RS06975at 1445.088 kb on - strand, within DZA65_RS06975at 1445.088 kb on - strand, within DZA65_RS06975at 1445.174 kb on + strand, within DZA65_RS06975at 1445.175 kb on - strand, within DZA65_RS06975at 1445.175 kb on - strand, within DZA65_RS06975at 1445.237 kb on + strand, within DZA65_RS06975at 1445.237 kb on + strand, within DZA65_RS06975at 1445.237 kb on + strand, within DZA65_RS06975at 1445.238 kb on - strand, within DZA65_RS06975at 1445.238 kb on - strand, within DZA65_RS06975at 1445.243 kb on - strand, within DZA65_RS06975at 1445.308 kb on + strand, within DZA65_RS06975at 1445.308 kb on + strand, within DZA65_RS06975at 1445.308 kb on + strand, within DZA65_RS06975at 1445.308 kb on + strand, within DZA65_RS06975at 1445.309 kb on - strand, within DZA65_RS06975at 1445.309 kb on - strandat 1445.309 kb on - strand, within DZA65_RS06975at 1445.309 kb on - strandat 1445.309 kb on - strand, within DZA65_RS06975at 1445.391 kb on - strand, within DZA65_RS06975at 1445.414 kb on + strand, within DZA65_RS06975at 1445.538 kb on + strandat 1445.557 kb on + strandat 1445.634 kb on + strandat 1445.635 kb on - strandat 1445.635 kb on - strandat 1445.635 kb on - strandat 1445.664 kb on + strandat 1445.664 kb on + strandat 1445.665 kb on - strandat 1445.665 kb on - strandat 1445.665 kb on - strandat 1445.758 kb on + strand, within DZA65_RS06980at 1445.758 kb on + strand, within DZA65_RS06980at 1445.759 kb on - strand, within DZA65_RS06980at 1445.759 kb on - strand, within DZA65_RS06980at 1445.759 kb on - strand, within DZA65_RS06980at 1445.974 kb on + strand, within DZA65_RS06980at 1445.975 kb on - strand, within DZA65_RS06980at 1445.975 kb on - strandat 1446.104 kb on - strand, within DZA65_RS06980at 1446.108 kb on + strand, within DZA65_RS06980at 1446.108 kb on + strand, within DZA65_RS06980at 1446.108 kb on + strand, within DZA65_RS06980at 1446.108 kb on + strand, within DZA65_RS06980at 1446.108 kb on + strand, within DZA65_RS06980at 1446.108 kb on + strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.109 kb on - strand, within DZA65_RS06980at 1446.119 kb on + strand, within DZA65_RS06980at 1446.119 kb on + strand, within DZA65_RS06980at 1446.271 kb on + strand, within DZA65_RS06980at 1446.271 kb on + strand, within DZA65_RS06980at 1446.272 kb on - strand, within DZA65_RS06980at 1446.342 kb on + strand, within DZA65_RS06980at 1446.488 kb on + strand, within DZA65_RS06980at 1446.488 kb on + strand, within DZA65_RS06980at 1446.489 kb on - strand, within DZA65_RS06980at 1446.489 kb on - strand, within DZA65_RS06980at 1446.492 kb on + strand, within DZA65_RS06980at 1446.492 kb on + strand, within DZA65_RS06980at 1446.492 kb on + strand, within DZA65_RS06980at 1446.493 kb on - strand, within DZA65_RS06980at 1446.493 kb on - strand, within DZA65_RS06980at 1446.493 kb on - strand, within DZA65_RS06980at 1446.493 kb on - strand, within DZA65_RS06980at 1446.493 kb on - strand, within DZA65_RS06980at 1446.493 kb on - strand, within DZA65_RS06980at 1446.493 kb on - strand, within DZA65_RS06980at 1446.565 kb on - strand, within DZA65_RS06980at 1446.565 kb on - strand, within DZA65_RS06980at 1446.628 kb on - strand, within DZA65_RS06980at 1446.628 kb on - strand, within DZA65_RS06980at 1446.628 kb on - strand, within DZA65_RS06980at 1446.628 kb on - strand, within DZA65_RS06980at 1446.628 kb on - strand, within DZA65_RS06980at 1446.628 kb on - strand, within DZA65_RS06980at 1446.628 kb on - strand, within DZA65_RS06980at 1446.628 kb on - strand, within DZA65_RS06980at 1446.628 kb on - strand, within DZA65_RS06980at 1446.663 kb on + strandat 1446.663 kb on + strandat 1446.663 kb on + strandat 1446.664 kb on - strandat 1446.664 kb on - strandat 1446.797 kb on + strandat 1446.805 kb on - strandat 1446.993 kb on + strand, within DZA65_RS06985at 1446.994 kb on - strand, within DZA65_RS06985at 1446.994 kb on - strand, within DZA65_RS06985at 1446.994 kb on - strand, within DZA65_RS06985at 1446.998 kb on + strand, within DZA65_RS06985at 1446.998 kb on + strand, within DZA65_RS06985at 1447.183 kb on + strand, within DZA65_RS06985at 1447.183 kb on + strand, within DZA65_RS06985at 1447.184 kb on - strand, within DZA65_RS06985at 1447.184 kb on - strand, within DZA65_RS06985at 1447.223 kb on + strand, within DZA65_RS06985at 1447.224 kb on - strand, within DZA65_RS06985at 1447.224 kb on - strand, within DZA65_RS06985at 1447.259 kb on + strand, within DZA65_RS06985at 1447.259 kb on + strand, within DZA65_RS06985at 1447.259 kb on + strand, within DZA65_RS06985at 1447.259 kb on + strand, within DZA65_RS06985at 1447.260 kb on - strand, within DZA65_RS06985at 1447.260 kb on - strand, within DZA65_RS06985at 1447.619 kb on + strand, within DZA65_RS06985at 1447.705 kb on + strand, within DZA65_RS06985at 1447.706 kb on - strand, within DZA65_RS06985at 1447.706 kb on - strand, within DZA65_RS06985

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,444,627 + +0.3
1,444,706 + DZA65_RS06975 0.14 +0.2
1,444,707 - DZA65_RS06975 0.14 +0.1
1,444,716 - DZA65_RS06975 0.15 +0.3
1,444,763 + DZA65_RS06975 0.19 -2.5
1,444,764 - DZA65_RS06975 0.20 -0.7
1,444,790 + DZA65_RS06975 0.22 +0.8
1,444,791 - DZA65_RS06975 0.22 +0.6
1,445,021 + DZA65_RS06975 0.43 +0.1
1,445,021 + DZA65_RS06975 0.43 +0.5
1,445,022 - DZA65_RS06975 0.43 -0.2
1,445,022 - DZA65_RS06975 0.43 +0.1
1,445,022 - DZA65_RS06975 0.43 +0.3
1,445,022 - DZA65_RS06975 0.43 -0.7
1,445,024 + DZA65_RS06975 0.44 -0.1
1,445,087 + DZA65_RS06975 0.49 -0.5
1,445,087 + DZA65_RS06975 0.49 +0.9
1,445,087 + DZA65_RS06975 0.49 +0.1
1,445,087 + DZA65_RS06975 0.49 -0.5
1,445,087 + DZA65_RS06975 0.49 -0.2
1,445,087 + DZA65_RS06975 0.49 +0.7
1,445,088 - DZA65_RS06975 0.49 +0.7
1,445,088 - DZA65_RS06975 0.49 +0.1
1,445,088 - DZA65_RS06975 0.49 +0.3
1,445,088 - DZA65_RS06975 0.49 -0.4
1,445,174 + DZA65_RS06975 0.57 -0.2
1,445,175 - DZA65_RS06975 0.58 -0.6
1,445,175 - DZA65_RS06975 0.58 +0.2
1,445,237 + DZA65_RS06975 0.63 -0.8
1,445,237 + DZA65_RS06975 0.63 -0.2
1,445,237 + DZA65_RS06975 0.63 +0.3
1,445,238 - DZA65_RS06975 0.63 +1.2
1,445,238 - DZA65_RS06975 0.63 -0.4
1,445,243 - DZA65_RS06975 0.64 +0.8
1,445,308 + DZA65_RS06975 0.70 +0.3
1,445,308 + DZA65_RS06975 0.70 -0.1
1,445,308 + DZA65_RS06975 0.70 +1.5
1,445,308 + DZA65_RS06975 0.70 -1.0
1,445,309 - DZA65_RS06975 0.70 -0.5
1,445,309 - +1.7
1,445,309 - DZA65_RS06975 0.70 -0.0
1,445,309 - +1.1
1,445,309 - DZA65_RS06975 0.70 +1.0
1,445,391 - DZA65_RS06975 0.77 +1.2
1,445,414 + DZA65_RS06975 0.80 +0.6
1,445,538 + -1.2
1,445,557 + +1.9
1,445,634 + +1.7
1,445,635 - -1.7
1,445,635 - +0.1
1,445,635 - -0.2
1,445,664 + +0.3
1,445,664 + -0.2
1,445,665 - -1.2
1,445,665 - -0.5
1,445,665 - +1.0
1,445,758 + DZA65_RS06980 0.12 -2.2
1,445,758 + DZA65_RS06980 0.12 -0.7
1,445,759 - DZA65_RS06980 0.12 -0.7
1,445,759 - DZA65_RS06980 0.12 +0.5
1,445,759 - DZA65_RS06980 0.12 -2.5
1,445,974 + DZA65_RS06980 0.30 -0.0
1,445,975 - DZA65_RS06980 0.30 -0.7
1,445,975 - +0.3
1,446,104 - DZA65_RS06980 0.42 -0.6
1,446,108 + DZA65_RS06980 0.42 -0.9
1,446,108 + DZA65_RS06980 0.42 -0.7
1,446,108 + DZA65_RS06980 0.42 -0.2
1,446,108 + DZA65_RS06980 0.42 -1.4
1,446,108 + DZA65_RS06980 0.42 +0.2
1,446,108 + DZA65_RS06980 0.42 -1.2
1,446,109 - DZA65_RS06980 0.42 -0.4
1,446,109 - DZA65_RS06980 0.42 +0.1
1,446,109 - DZA65_RS06980 0.42 +0.2
1,446,109 - DZA65_RS06980 0.42 -2.5
1,446,109 - DZA65_RS06980 0.42 -1.5
1,446,109 - DZA65_RS06980 0.42 -0.2
1,446,109 - DZA65_RS06980 0.42 +0.2
1,446,109 - DZA65_RS06980 0.42 -0.1
1,446,109 - DZA65_RS06980 0.42 +0.8
1,446,109 - DZA65_RS06980 0.42 -1.5
1,446,109 - DZA65_RS06980 0.42 +0.6
1,446,119 + DZA65_RS06980 0.43 +0.5
1,446,119 + DZA65_RS06980 0.43 +0.2
1,446,271 + DZA65_RS06980 0.56 -2.4
1,446,271 + DZA65_RS06980 0.56 +1.0
1,446,272 - DZA65_RS06980 0.56 -1.9
1,446,342 + DZA65_RS06980 0.62 +0.0
1,446,488 + DZA65_RS06980 0.75 -0.1
1,446,488 + DZA65_RS06980 0.75 -1.8
1,446,489 - DZA65_RS06980 0.75 -0.2
1,446,489 - DZA65_RS06980 0.75 -0.5
1,446,492 + DZA65_RS06980 0.75 +0.2
1,446,492 + DZA65_RS06980 0.75 -0.7
1,446,492 + DZA65_RS06980 0.75 -1.2
1,446,493 - DZA65_RS06980 0.75 +1.6
1,446,493 - DZA65_RS06980 0.75 +0.8
1,446,493 - DZA65_RS06980 0.75 +0.3
1,446,493 - DZA65_RS06980 0.75 -0.7
1,446,493 - DZA65_RS06980 0.75 -2.5
1,446,493 - DZA65_RS06980 0.75 -0.1
1,446,493 - DZA65_RS06980 0.75 +0.8
1,446,565 - DZA65_RS06980 0.82 +0.7
1,446,565 - DZA65_RS06980 0.82 -0.7
1,446,628 - DZA65_RS06980 0.87 +0.2
1,446,628 - DZA65_RS06980 0.87 +2.3
1,446,628 - DZA65_RS06980 0.87 +1.3
1,446,628 - DZA65_RS06980 0.87 -0.5
1,446,628 - DZA65_RS06980 0.87 -3.1
1,446,628 - DZA65_RS06980 0.87 +0.3
1,446,628 - DZA65_RS06980 0.87 -0.7
1,446,628 - DZA65_RS06980 0.87 -0.7
1,446,628 - DZA65_RS06980 0.87 -0.0
1,446,663 + +0.3
1,446,663 + +0.9
1,446,663 + +0.3
1,446,664 - -2.1
1,446,664 - -0.3
1,446,797 + -1.4
1,446,805 - +0.1
1,446,993 + DZA65_RS06985 0.21 -1.2
1,446,994 - DZA65_RS06985 0.21 -2.7
1,446,994 - DZA65_RS06985 0.21 -0.4
1,446,994 - DZA65_RS06985 0.21 -2.1
1,446,998 + DZA65_RS06985 0.21 -0.4
1,446,998 + DZA65_RS06985 0.21 -0.8
1,447,183 + DZA65_RS06985 0.39 +0.3
1,447,183 + DZA65_RS06985 0.39 -1.0
1,447,184 - DZA65_RS06985 0.39 -1.1
1,447,184 - DZA65_RS06985 0.39 -0.4
1,447,223 + DZA65_RS06985 0.43 +0.9
1,447,224 - DZA65_RS06985 0.43 +0.9
1,447,224 - DZA65_RS06985 0.43 -1.5
1,447,259 + DZA65_RS06985 0.46 -0.4
1,447,259 + DZA65_RS06985 0.46 -1.8
1,447,259 + DZA65_RS06985 0.46 -0.7
1,447,259 + DZA65_RS06985 0.46 -1.4
1,447,260 - DZA65_RS06985 0.46 -1.7
1,447,260 - DZA65_RS06985 0.46 -0.4
1,447,619 + DZA65_RS06985 0.80 -0.7
1,447,705 + DZA65_RS06985 0.89 -0.8
1,447,706 - DZA65_RS06985 0.89 +0.3
1,447,706 - DZA65_RS06985 0.89 -1.8

Or see this region's nucleotide sequence