Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05905

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05895 and DZA65_RS05900 are separated by 22 nucleotidesDZA65_RS05900 and DZA65_RS05905 are separated by 60 nucleotidesDZA65_RS05905 and DZA65_RS05910 overlap by 20 nucleotidesDZA65_RS05910 and DZA65_RS05915 are separated by 86 nucleotides DZA65_RS05895: DZA65_RS05895 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,216,909 to 1,217,382 _RS05895 DZA65_RS05900: DZA65_RS05900 - transcription antitermination factor NusB, at 1,217,405 to 1,217,824 _RS05900 DZA65_RS05905: DZA65_RS05905 - thiamine-phosphate kinase, at 1,217,885 to 1,218,859 _RS05905 DZA65_RS05910: DZA65_RS05910 - phosphatidylglycerophosphatase A, at 1,218,840 to 1,219,352 _RS05910 DZA65_RS05915: DZA65_RS05915 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,219,439 to 1,221,301 _RS05915 Position (kb) 1217 1218 1219Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1216.888 kb on + strandat 1216.888 kb on + strandat 1217.543 kb on + strand, within DZA65_RS05900at 1217.801 kb on + strandat 1217.822 kb on + strandat 1217.865 kb on + strandat 1219.341 kb on + strandat 1219.341 kb on + strandat 1219.341 kb on + strandat 1219.341 kb on + strandat 1219.341 kb on + strandat 1219.368 kb on - strandat 1219.368 kb on - strandat 1219.368 kb on - strandat 1219.369 kb on + strandat 1219.370 kb on - strandat 1219.370 kb on - strandat 1219.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,216,888 + +0.0
1,216,888 + +0.9
1,217,543 + DZA65_RS05900 0.33 +1.0
1,217,801 + -0.7
1,217,822 + -0.8
1,217,865 + +0.0
1,219,341 + +0.8
1,219,341 + -1.1
1,219,341 + +0.9
1,219,341 + -2.6
1,219,341 + -0.6
1,219,368 - +0.7
1,219,368 - -1.6
1,219,368 - -0.6
1,219,369 + +1.3
1,219,370 - +2.8
1,219,370 - -1.1
1,219,403 - -1.1

Or see this region's nucleotide sequence