Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05645

Experiment: Norland

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS05640 and DZA65_RS05645 are separated by 43 nucleotidesDZA65_RS05645 and DZA65_RS05650 overlap by 4 nucleotidesDZA65_RS05650 and DZA65_RS05655 are separated by 2 nucleotidesDZA65_RS05655 and DZA65_RS05660 are separated by 15 nucleotides DZA65_RS05640: DZA65_RS05640 - hypothetical protein, at 1,159,210 to 1,162,227 _RS05640 DZA65_RS05645: DZA65_RS05645 - DUF692 family protein, at 1,162,271 to 1,163,104 _RS05645 DZA65_RS05650: DZA65_RS05650 - hypothetical protein, at 1,163,101 to 1,163,685 _RS05650 DZA65_RS05655: DZA65_RS05655 - hypothetical protein, at 1,163,688 to 1,163,948 _RS05655 DZA65_RS05660: DZA65_RS05660 - molybdopterin-synthase adenylyltransferase MoeB, at 1,163,964 to 1,165,049 _RS05660 Position (kb) 1162 1163 1164Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1161.279 kb on + strand, within DZA65_RS05640at 1161.280 kb on - strand, within DZA65_RS05640at 1161.280 kb on - strandat 1161.294 kb on + strand, within DZA65_RS05640at 1161.295 kb on - strand, within DZA65_RS05640at 1161.302 kb on - strand, within DZA65_RS05640at 1161.312 kb on + strand, within DZA65_RS05640at 1161.313 kb on - strand, within DZA65_RS05640at 1161.318 kb on + strand, within DZA65_RS05640at 1161.318 kb on + strand, within DZA65_RS05640at 1161.318 kb on + strand, within DZA65_RS05640at 1161.318 kb on + strand, within DZA65_RS05640at 1161.319 kb on - strand, within DZA65_RS05640at 1161.418 kb on + strand, within DZA65_RS05640at 1161.419 kb on - strand, within DZA65_RS05640at 1161.419 kb on - strand, within DZA65_RS05640at 1161.526 kb on - strand, within DZA65_RS05640at 1161.535 kb on + strand, within DZA65_RS05640at 1161.535 kb on + strand, within DZA65_RS05640at 1161.535 kb on + strand, within DZA65_RS05640at 1161.535 kb on + strand, within DZA65_RS05640at 1161.536 kb on - strand, within DZA65_RS05640at 1161.536 kb on - strand, within DZA65_RS05640at 1161.539 kb on + strand, within DZA65_RS05640at 1161.539 kb on + strand, within DZA65_RS05640at 1161.539 kb on + strand, within DZA65_RS05640at 1161.540 kb on - strand, within DZA65_RS05640at 1161.540 kb on - strand, within DZA65_RS05640at 1161.551 kb on + strand, within DZA65_RS05640at 1161.552 kb on - strand, within DZA65_RS05640at 1161.616 kb on + strand, within DZA65_RS05640at 1161.616 kb on + strand, within DZA65_RS05640at 1161.616 kb on + strand, within DZA65_RS05640at 1161.616 kb on + strand, within DZA65_RS05640at 1161.617 kb on - strand, within DZA65_RS05640at 1161.617 kb on - strand, within DZA65_RS05640at 1161.617 kb on - strand, within DZA65_RS05640at 1161.618 kb on + strand, within DZA65_RS05640at 1161.618 kb on + strand, within DZA65_RS05640at 1161.618 kb on + strand, within DZA65_RS05640at 1161.631 kb on + strand, within DZA65_RS05640at 1161.631 kb on + strand, within DZA65_RS05640at 1161.656 kb on + strand, within DZA65_RS05640at 1161.656 kb on + strand, within DZA65_RS05640at 1161.656 kb on + strand, within DZA65_RS05640at 1161.682 kb on + strand, within DZA65_RS05640at 1161.682 kb on + strand, within DZA65_RS05640at 1161.683 kb on - strand, within DZA65_RS05640at 1161.683 kb on - strand, within DZA65_RS05640at 1161.683 kb on - strand, within DZA65_RS05640at 1161.684 kb on + strand, within DZA65_RS05640at 1161.685 kb on - strand, within DZA65_RS05640at 1161.685 kb on - strand, within DZA65_RS05640at 1161.685 kb on - strand, within DZA65_RS05640at 1161.705 kb on + strand, within DZA65_RS05640at 1161.706 kb on - strand, within DZA65_RS05640at 1161.708 kb on + strand, within DZA65_RS05640at 1161.709 kb on - strand, within DZA65_RS05640at 1161.709 kb on - strand, within DZA65_RS05640at 1161.709 kb on - strand, within DZA65_RS05640at 1161.709 kb on - strand, within DZA65_RS05640at 1161.709 kb on - strand, within DZA65_RS05640at 1161.709 kb on - strand, within DZA65_RS05640at 1161.739 kb on - strand, within DZA65_RS05640at 1161.745 kb on + strand, within DZA65_RS05640at 1161.745 kb on + strand, within DZA65_RS05640at 1161.746 kb on - strand, within DZA65_RS05640at 1161.746 kb on - strand, within DZA65_RS05640at 1161.748 kb on - strand, within DZA65_RS05640at 1161.796 kb on + strand, within DZA65_RS05640at 1161.862 kb on + strand, within DZA65_RS05640at 1161.863 kb on - strand, within DZA65_RS05640at 1161.874 kb on + strand, within DZA65_RS05640at 1161.874 kb on + strand, within DZA65_RS05640at 1161.874 kb on + strand, within DZA65_RS05640at 1161.874 kb on + strand, within DZA65_RS05640at 1161.874 kb on + strand, within DZA65_RS05640at 1161.874 kb on + strand, within DZA65_RS05640at 1161.875 kb on - strand, within DZA65_RS05640at 1161.875 kb on - strand, within DZA65_RS05640at 1161.875 kb on - strand, within DZA65_RS05640at 1161.875 kb on - strand, within DZA65_RS05640at 1161.878 kb on + strand, within DZA65_RS05640at 1161.878 kb on + strand, within DZA65_RS05640at 1161.878 kb on + strand, within DZA65_RS05640at 1161.878 kb on + strand, within DZA65_RS05640at 1161.879 kb on - strand, within DZA65_RS05640at 1161.879 kb on - strand, within DZA65_RS05640at 1161.879 kb on - strand, within DZA65_RS05640at 1161.879 kb on - strand, within DZA65_RS05640at 1161.879 kb on - strand, within DZA65_RS05640at 1161.879 kb on - strand, within DZA65_RS05640at 1161.879 kb on - strand, within DZA65_RS05640at 1161.906 kb on + strand, within DZA65_RS05640at 1161.906 kb on + strand, within DZA65_RS05640at 1161.907 kb on - strand, within DZA65_RS05640at 1161.907 kb on - strand, within DZA65_RS05640at 1161.907 kb on - strand, within DZA65_RS05640at 1161.907 kb on - strand, within DZA65_RS05640at 1161.910 kb on + strand, within DZA65_RS05640at 1161.911 kb on - strand, within DZA65_RS05640at 1161.911 kb on - strand, within DZA65_RS05640at 1161.956 kb on + strandat 1161.957 kb on - strandat 1161.957 kb on - strandat 1161.973 kb on - strandat 1162.043 kb on + strandat 1162.044 kb on - strandat 1162.125 kb on + strandat 1162.125 kb on + strandat 1162.135 kb on + strandat 1162.136 kb on - strandat 1162.136 kb on - strandat 1162.136 kb on - strandat 1162.138 kb on + strandat 1162.139 kb on - strandat 1162.139 kb on - strandat 1162.139 kb on - strandat 1162.207 kb on - strandat 1162.228 kb on - strandat 1162.228 kb on - strandat 1162.247 kb on + strandat 1162.251 kb on - strandat 1162.254 kb on - strandat 1162.256 kb on - strandat 1162.314 kb on - strandat 1162.388 kb on - strand, within DZA65_RS05645at 1162.454 kb on - strand, within DZA65_RS05645at 1162.477 kb on + strand, within DZA65_RS05645at 1162.477 kb on + strand, within DZA65_RS05645at 1162.501 kb on + strand, within DZA65_RS05645at 1162.502 kb on - strand, within DZA65_RS05645at 1162.535 kb on - strand, within DZA65_RS05645at 1162.566 kb on + strand, within DZA65_RS05645at 1162.575 kb on + strand, within DZA65_RS05645at 1162.583 kb on + strand, within DZA65_RS05645at 1162.583 kb on + strand, within DZA65_RS05645at 1162.583 kb on + strand, within DZA65_RS05645at 1162.584 kb on - strand, within DZA65_RS05645at 1162.584 kb on - strand, within DZA65_RS05645at 1162.584 kb on - strand, within DZA65_RS05645at 1162.672 kb on + strand, within DZA65_RS05645at 1162.672 kb on + strand, within DZA65_RS05645at 1162.730 kb on + strand, within DZA65_RS05645at 1162.795 kb on + strand, within DZA65_RS05645at 1162.795 kb on + strand, within DZA65_RS05645at 1162.795 kb on + strand, within DZA65_RS05645at 1162.795 kb on + strand, within DZA65_RS05645at 1162.795 kb on + strand, within DZA65_RS05645at 1162.795 kb on + strand, within DZA65_RS05645at 1162.795 kb on + strand, within DZA65_RS05645at 1162.796 kb on - strand, within DZA65_RS05645at 1162.796 kb on - strand, within DZA65_RS05645at 1162.796 kb on - strand, within DZA65_RS05645at 1162.798 kb on - strand, within DZA65_RS05645at 1162.822 kb on + strand, within DZA65_RS05645at 1162.935 kb on - strand, within DZA65_RS05645at 1162.976 kb on + strand, within DZA65_RS05645at 1163.049 kb on - strandat 1163.054 kb on - strandat 1163.061 kb on + strandat 1163.074 kb on - strandat 1163.219 kb on - strand, within DZA65_RS05650at 1163.242 kb on - strand, within DZA65_RS05650at 1163.278 kb on + strand, within DZA65_RS05650at 1163.278 kb on + strand, within DZA65_RS05650at 1163.279 kb on - strand, within DZA65_RS05650at 1163.279 kb on - strand, within DZA65_RS05650at 1163.279 kb on - strand, within DZA65_RS05650at 1163.348 kb on - strand, within DZA65_RS05650at 1163.409 kb on + strand, within DZA65_RS05650at 1163.454 kb on - strand, within DZA65_RS05650at 1163.458 kb on + strand, within DZA65_RS05650at 1163.461 kb on + strand, within DZA65_RS05650at 1163.484 kb on + strandat 1163.520 kb on - strand, within DZA65_RS05650at 1163.525 kb on - strand, within DZA65_RS05650at 1163.598 kb on - strand, within DZA65_RS05650at 1163.603 kb on + strand, within DZA65_RS05650at 1163.604 kb on - strand, within DZA65_RS05650at 1163.642 kb on + strandat 1163.642 kb on + strandat 1163.642 kb on + strandat 1163.643 kb on - strandat 1163.644 kb on + strandat 1163.644 kb on + strandat 1163.644 kb on + strandat 1163.645 kb on - strandat 1163.645 kb on - strandat 1163.645 kb on - strandat 1163.657 kb on + strandat 1163.668 kb on + strandat 1163.707 kb on - strandat 1163.766 kb on - strand, within DZA65_RS05655at 1163.774 kb on + strand, within DZA65_RS05655at 1163.797 kb on - strand, within DZA65_RS05655at 1163.841 kb on - strand, within DZA65_RS05655at 1163.906 kb on + strand, within DZA65_RS05655at 1163.955 kb on - strandat 1163.973 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Norland
remove
1,161,279 + DZA65_RS05640 0.69 +0.1
1,161,280 - DZA65_RS05640 0.69 +1.7
1,161,280 - -0.9
1,161,294 + DZA65_RS05640 0.69 +0.6
1,161,295 - DZA65_RS05640 0.69 -1.2
1,161,302 - DZA65_RS05640 0.69 -0.3
1,161,312 + DZA65_RS05640 0.70 +0.1
1,161,313 - DZA65_RS05640 0.70 -0.0
1,161,318 + DZA65_RS05640 0.70 -0.7
1,161,318 + DZA65_RS05640 0.70 +0.7
1,161,318 + DZA65_RS05640 0.70 +1.1
1,161,318 + DZA65_RS05640 0.70 -1.5
1,161,319 - DZA65_RS05640 0.70 +0.2
1,161,418 + DZA65_RS05640 0.73 -0.2
1,161,419 - DZA65_RS05640 0.73 -2.0
1,161,419 - DZA65_RS05640 0.73 -0.3
1,161,526 - DZA65_RS05640 0.77 +0.0
1,161,535 + DZA65_RS05640 0.77 -0.4
1,161,535 + DZA65_RS05640 0.77 +0.6
1,161,535 + DZA65_RS05640 0.77 +0.7
1,161,535 + DZA65_RS05640 0.77 -0.1
1,161,536 - DZA65_RS05640 0.77 +0.0
1,161,536 - DZA65_RS05640 0.77 +0.6
1,161,539 + DZA65_RS05640 0.77 +1.0
1,161,539 + DZA65_RS05640 0.77 -0.1
1,161,539 + DZA65_RS05640 0.77 -0.1
1,161,540 - DZA65_RS05640 0.77 -0.0
1,161,540 - DZA65_RS05640 0.77 -0.3
1,161,551 + DZA65_RS05640 0.78 -0.3
1,161,552 - DZA65_RS05640 0.78 +0.3
1,161,616 + DZA65_RS05640 0.80 +0.5
1,161,616 + DZA65_RS05640 0.80 +0.9
1,161,616 + DZA65_RS05640 0.80 -0.4
1,161,616 + DZA65_RS05640 0.80 +0.7
1,161,617 - DZA65_RS05640 0.80 +0.0
1,161,617 - DZA65_RS05640 0.80 +0.3
1,161,617 - DZA65_RS05640 0.80 +0.7
1,161,618 + DZA65_RS05640 0.80 -0.0
1,161,618 + DZA65_RS05640 0.80 +1.7
1,161,618 + DZA65_RS05640 0.80 +0.9
1,161,631 + DZA65_RS05640 0.80 -1.1
1,161,631 + DZA65_RS05640 0.80 +0.6
1,161,656 + DZA65_RS05640 0.81 -0.6
1,161,656 + DZA65_RS05640 0.81 +0.1
1,161,656 + DZA65_RS05640 0.81 -1.2
1,161,682 + DZA65_RS05640 0.82 +0.8
1,161,682 + DZA65_RS05640 0.82 -1.9
1,161,683 - DZA65_RS05640 0.82 +1.3
1,161,683 - DZA65_RS05640 0.82 -1.0
1,161,683 - DZA65_RS05640 0.82 -0.1
1,161,684 + DZA65_RS05640 0.82 -1.0
1,161,685 - DZA65_RS05640 0.82 -0.2
1,161,685 - DZA65_RS05640 0.82 -2.0
1,161,685 - DZA65_RS05640 0.82 -1.1
1,161,705 + DZA65_RS05640 0.83 -0.4
1,161,706 - DZA65_RS05640 0.83 +0.5
1,161,708 + DZA65_RS05640 0.83 -0.4
1,161,709 - DZA65_RS05640 0.83 -0.2
1,161,709 - DZA65_RS05640 0.83 +1.1
1,161,709 - DZA65_RS05640 0.83 -0.3
1,161,709 - DZA65_RS05640 0.83 -0.9
1,161,709 - DZA65_RS05640 0.83 -1.1
1,161,709 - DZA65_RS05640 0.83 +0.1
1,161,739 - DZA65_RS05640 0.84 -0.4
1,161,745 + DZA65_RS05640 0.84 +1.3
1,161,745 + DZA65_RS05640 0.84 -1.3
1,161,746 - DZA65_RS05640 0.84 -0.3
1,161,746 - DZA65_RS05640 0.84 +1.0
1,161,748 - DZA65_RS05640 0.84 -0.3
1,161,796 + DZA65_RS05640 0.86 -0.4
1,161,862 + DZA65_RS05640 0.88 -0.5
1,161,863 - DZA65_RS05640 0.88 -0.1
1,161,874 + DZA65_RS05640 0.88 +0.1
1,161,874 + DZA65_RS05640 0.88 +0.9
1,161,874 + DZA65_RS05640 0.88 -0.5
1,161,874 + DZA65_RS05640 0.88 +0.1
1,161,874 + DZA65_RS05640 0.88 +1.0
1,161,874 + DZA65_RS05640 0.88 -0.1
1,161,875 - DZA65_RS05640 0.88 +1.5
1,161,875 - DZA65_RS05640 0.88 +0.5
1,161,875 - DZA65_RS05640 0.88 -0.1
1,161,875 - DZA65_RS05640 0.88 -1.3
1,161,878 + DZA65_RS05640 0.88 -0.5
1,161,878 + DZA65_RS05640 0.88 -0.9
1,161,878 + DZA65_RS05640 0.88 -1.2
1,161,878 + DZA65_RS05640 0.88 -0.7
1,161,879 - DZA65_RS05640 0.88 -1.1
1,161,879 - DZA65_RS05640 0.88 +1.5
1,161,879 - DZA65_RS05640 0.88 -0.1
1,161,879 - DZA65_RS05640 0.88 -0.1
1,161,879 - DZA65_RS05640 0.88 -0.6
1,161,879 - DZA65_RS05640 0.88 -0.1
1,161,879 - DZA65_RS05640 0.88 +0.0
1,161,906 + DZA65_RS05640 0.89 +1.1
1,161,906 + DZA65_RS05640 0.89 -1.3
1,161,907 - DZA65_RS05640 0.89 -1.1
1,161,907 - DZA65_RS05640 0.89 -1.3
1,161,907 - DZA65_RS05640 0.89 -0.5
1,161,907 - DZA65_RS05640 0.89 -1.7
1,161,910 + DZA65_RS05640 0.89 +1.1
1,161,911 - DZA65_RS05640 0.89 +0.7
1,161,911 - DZA65_RS05640 0.89 +0.3
1,161,956 + +0.3
1,161,957 - -0.4
1,161,957 - +0.2
1,161,973 - -1.5
1,162,043 + +0.4
1,162,044 - +1.1
1,162,125 + +0.5
1,162,125 + +0.3
1,162,135 + -0.1
1,162,136 - -0.6
1,162,136 - +0.5
1,162,136 - -0.1
1,162,138 + -0.9
1,162,139 - -2.0
1,162,139 - +0.3
1,162,139 - +3.2
1,162,207 - +0.5
1,162,228 - +1.7
1,162,228 - +0.6
1,162,247 + -0.4
1,162,251 - +0.1
1,162,254 - -0.1
1,162,256 - -1.0
1,162,314 - +0.8
1,162,388 - DZA65_RS05645 0.14 -0.6
1,162,454 - DZA65_RS05645 0.22 -1.5
1,162,477 + DZA65_RS05645 0.25 -0.2
1,162,477 + DZA65_RS05645 0.25 +0.5
1,162,501 + DZA65_RS05645 0.28 -1.4
1,162,502 - DZA65_RS05645 0.28 +0.1
1,162,535 - DZA65_RS05645 0.32 -1.1
1,162,566 + DZA65_RS05645 0.35 -1.7
1,162,575 + DZA65_RS05645 0.36 -1.3
1,162,583 + DZA65_RS05645 0.37 -0.9
1,162,583 + DZA65_RS05645 0.37 -1.4
1,162,583 + DZA65_RS05645 0.37 +0.9
1,162,584 - DZA65_RS05645 0.38 -0.3
1,162,584 - DZA65_RS05645 0.38 +0.6
1,162,584 - DZA65_RS05645 0.38 -0.3
1,162,672 + DZA65_RS05645 0.48 +0.5
1,162,672 + DZA65_RS05645 0.48 +0.1
1,162,730 + DZA65_RS05645 0.55 +1.1
1,162,795 + DZA65_RS05645 0.63 +0.4
1,162,795 + DZA65_RS05645 0.63 -1.1
1,162,795 + DZA65_RS05645 0.63 +1.6
1,162,795 + DZA65_RS05645 0.63 -1.1
1,162,795 + DZA65_RS05645 0.63 -0.3
1,162,795 + DZA65_RS05645 0.63 +0.2
1,162,795 + DZA65_RS05645 0.63 -0.8
1,162,796 - DZA65_RS05645 0.63 -0.5
1,162,796 - DZA65_RS05645 0.63 +0.2
1,162,796 - DZA65_RS05645 0.63 -0.5
1,162,798 - DZA65_RS05645 0.63 +0.1
1,162,822 + DZA65_RS05645 0.66 -1.0
1,162,935 - DZA65_RS05645 0.80 -0.1
1,162,976 + DZA65_RS05645 0.85 -0.2
1,163,049 - +0.8
1,163,054 - +0.7
1,163,061 + +0.6
1,163,074 - +0.5
1,163,219 - DZA65_RS05650 0.20 -0.6
1,163,242 - DZA65_RS05650 0.24 +0.1
1,163,278 + DZA65_RS05650 0.30 +1.5
1,163,278 + DZA65_RS05650 0.30 -0.9
1,163,279 - DZA65_RS05650 0.30 -0.4
1,163,279 - DZA65_RS05650 0.30 -0.3
1,163,279 - DZA65_RS05650 0.30 +0.5
1,163,348 - DZA65_RS05650 0.42 -0.9
1,163,409 + DZA65_RS05650 0.53 +0.1
1,163,454 - DZA65_RS05650 0.60 -0.3
1,163,458 + DZA65_RS05650 0.61 +0.7
1,163,461 + DZA65_RS05650 0.62 -1.9
1,163,484 + -1.1
1,163,520 - DZA65_RS05650 0.72 +0.6
1,163,525 - DZA65_RS05650 0.72 -0.9
1,163,598 - DZA65_RS05650 0.85 -0.9
1,163,603 + DZA65_RS05650 0.86 -0.3
1,163,604 - DZA65_RS05650 0.86 -0.4
1,163,642 + -1.4
1,163,642 + -0.3
1,163,642 + +0.8
1,163,643 - -0.3
1,163,644 + -1.1
1,163,644 + -1.5
1,163,644 + -1.3
1,163,645 - +1.0
1,163,645 - -0.2
1,163,645 - +1.1
1,163,657 + -0.7
1,163,668 + +0.6
1,163,707 - -0.6
1,163,766 - DZA65_RS05655 0.30 +1.5
1,163,774 + DZA65_RS05655 0.33 +2.1
1,163,797 - DZA65_RS05655 0.42 -0.5
1,163,841 - DZA65_RS05655 0.59 +0.1
1,163,906 + DZA65_RS05655 0.84 +0.4
1,163,955 - +1.0
1,163,973 - +0.5

Or see this region's nucleotide sequence