Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03290

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03285 and DZA65_RS03290 are separated by 318 nucleotidesDZA65_RS03290 and DZA65_RS03295 overlap by 7 nucleotidesDZA65_RS03295 and DZA65_RS03300 overlap by 14 nucleotides DZA65_RS03285: DZA65_RS03285 - U32 family peptidase, at 696,904 to 697,902 _RS03285 DZA65_RS03290: DZA65_RS03290 - SCP2 domain-containing protein, at 698,221 to 698,745 _RS03290 DZA65_RS03295: DZA65_RS03295 - N-acetyltransferase, at 698,739 to 699,242 _RS03295 DZA65_RS03300: DZA65_RS03300 - GIY-YIG nuclease family protein, at 699,229 to 699,531 _RS03300 Position (kb) 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 697.264 kb on + strand, within DZA65_RS03285at 697.330 kb on + strand, within DZA65_RS03285at 697.358 kb on + strand, within DZA65_RS03285at 697.359 kb on - strand, within DZA65_RS03285at 697.370 kb on + strand, within DZA65_RS03285at 697.452 kb on + strand, within DZA65_RS03285at 697.453 kb on - strand, within DZA65_RS03285at 697.514 kb on + strand, within DZA65_RS03285at 697.514 kb on + strand, within DZA65_RS03285at 697.514 kb on + strand, within DZA65_RS03285at 697.514 kb on + strand, within DZA65_RS03285at 697.515 kb on - strand, within DZA65_RS03285at 697.515 kb on - strand, within DZA65_RS03285at 697.515 kb on - strand, within DZA65_RS03285at 697.515 kb on - strand, within DZA65_RS03285at 697.515 kb on - strand, within DZA65_RS03285at 697.570 kb on + strand, within DZA65_RS03285at 697.570 kb on + strand, within DZA65_RS03285at 697.570 kb on + strand, within DZA65_RS03285at 697.571 kb on - strand, within DZA65_RS03285at 697.575 kb on + strand, within DZA65_RS03285at 697.575 kb on + strand, within DZA65_RS03285at 697.576 kb on - strand, within DZA65_RS03285at 697.596 kb on - strand, within DZA65_RS03285at 697.704 kb on + strand, within DZA65_RS03285at 697.704 kb on + strandat 697.704 kb on + strand, within DZA65_RS03285at 697.704 kb on + strand, within DZA65_RS03285at 697.704 kb on + strand, within DZA65_RS03285at 697.705 kb on - strand, within DZA65_RS03285at 697.716 kb on + strand, within DZA65_RS03285at 697.745 kb on + strand, within DZA65_RS03285at 697.745 kb on + strand, within DZA65_RS03285at 697.745 kb on + strand, within DZA65_RS03285at 697.745 kb on + strand, within DZA65_RS03285at 697.745 kb on + strand, within DZA65_RS03285at 697.746 kb on - strand, within DZA65_RS03285at 697.746 kb on - strand, within DZA65_RS03285at 697.829 kb on + strandat 697.829 kb on + strandat 697.829 kb on + strandat 697.829 kb on + strandat 697.829 kb on + strandat 697.830 kb on - strandat 697.830 kb on - strandat 697.906 kb on + strandat 697.906 kb on + strandat 697.906 kb on + strandat 697.906 kb on + strandat 697.906 kb on + strandat 697.906 kb on + strandat 697.906 kb on + strandat 697.907 kb on - strandat 697.907 kb on - strandat 697.907 kb on - strandat 697.907 kb on - strandat 697.907 kb on - strandat 697.907 kb on - strandat 697.962 kb on + strandat 697.993 kb on - strandat 697.993 kb on - strandat 698.051 kb on + strandat 698.051 kb on + strandat 698.052 kb on - strandat 698.057 kb on + strandat 698.129 kb on + strandat 698.129 kb on + strandat 698.137 kb on + strandat 698.137 kb on + strandat 698.137 kb on + strandat 698.137 kb on + strandat 698.137 kb on + strandat 698.138 kb on - strandat 698.138 kb on - strandat 698.174 kb on + strandat 698.175 kb on - strandat 698.175 kb on - strandat 698.183 kb on + strandat 698.205 kb on + strandat 698.206 kb on - strandat 698.206 kb on - strandat 698.206 kb on - strandat 698.214 kb on + strandat 698.214 kb on + strandat 698.214 kb on + strandat 698.214 kb on + strandat 698.215 kb on - strandat 698.215 kb on - strandat 698.215 kb on - strandat 698.215 kb on - strandat 698.234 kb on + strandat 698.267 kb on + strandat 698.267 kb on + strandat 698.275 kb on - strand, within DZA65_RS03290at 698.413 kb on - strand, within DZA65_RS03290at 698.467 kb on - strand, within DZA65_RS03290at 698.467 kb on - strand, within DZA65_RS03290at 698.467 kb on - strand, within DZA65_RS03290at 698.467 kb on - strand, within DZA65_RS03290at 698.544 kb on + strand, within DZA65_RS03290at 698.549 kb on + strand, within DZA65_RS03290at 698.549 kb on + strand, within DZA65_RS03290at 698.571 kb on + strand, within DZA65_RS03290at 698.572 kb on - strand, within DZA65_RS03290at 698.572 kb on - strand, within DZA65_RS03290at 698.599 kb on + strand, within DZA65_RS03290at 698.599 kb on + strand, within DZA65_RS03290at 698.600 kb on - strand, within DZA65_RS03290at 698.600 kb on - strand, within DZA65_RS03290at 698.637 kb on + strand, within DZA65_RS03290at 698.637 kb on + strand, within DZA65_RS03290at 698.637 kb on + strand, within DZA65_RS03290at 698.638 kb on - strand, within DZA65_RS03290at 698.638 kb on - strand, within DZA65_RS03290at 698.638 kb on - strand, within DZA65_RS03290at 698.696 kb on + strandat 698.736 kb on - strandat 698.827 kb on + strand, within DZA65_RS03295at 698.828 kb on - strand, within DZA65_RS03295at 698.828 kb on - strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.900 kb on - strand, within DZA65_RS03295at 698.900 kb on - strand, within DZA65_RS03295at 698.904 kb on + strand, within DZA65_RS03295at 698.905 kb on - strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strandat 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.019 kb on - strand, within DZA65_RS03295at 699.019 kb on - strand, within DZA65_RS03295at 699.019 kb on - strand, within DZA65_RS03295at 699.019 kb on - strand, within DZA65_RS03295at 699.019 kb on - strand, within DZA65_RS03295at 699.064 kb on + strand, within DZA65_RS03295at 699.084 kb on + strand, within DZA65_RS03295at 699.084 kb on + strand, within DZA65_RS03295at 699.084 kb on + strand, within DZA65_RS03295at 699.084 kb on + strand, within DZA65_RS03295at 699.085 kb on - strand, within DZA65_RS03295at 699.085 kb on - strand, within DZA65_RS03295at 699.088 kb on - strand, within DZA65_RS03295at 699.088 kb on - strand, within DZA65_RS03295at 699.088 kb on - strand, within DZA65_RS03295at 699.088 kb on - strand, within DZA65_RS03295at 699.129 kb on + strand, within DZA65_RS03295at 699.129 kb on + strand, within DZA65_RS03295at 699.130 kb on - strand, within DZA65_RS03295at 699.130 kb on - strand, within DZA65_RS03295at 699.130 kb on - strand, within DZA65_RS03295at 699.168 kb on + strand, within DZA65_RS03295at 699.326 kb on + strand, within DZA65_RS03300at 699.327 kb on - strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.470 kb on + strand, within DZA65_RS03300at 699.470 kb on + strand, within DZA65_RS03300at 699.470 kb on + strand, within DZA65_RS03300at 699.471 kb on - strand, within DZA65_RS03300at 699.471 kb on - strand, within DZA65_RS03300at 699.501 kb on - strandat 699.561 kb on - strandat 699.565 kb on + strandat 699.565 kb on + strandat 699.565 kb on + strandat 699.566 kb on - strandat 699.573 kb on + strandat 699.573 kb on + strandat 699.574 kb on - strandat 699.574 kb on - strandat 699.641 kb on + strandat 699.646 kb on - strandat 699.695 kb on - strandat 699.712 kb on + strandat 699.723 kb on + strandat 699.727 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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697,264 + DZA65_RS03285 0.36 -0.3
697,330 + DZA65_RS03285 0.43 +1.4
697,358 + DZA65_RS03285 0.45 -0.0
697,359 - DZA65_RS03285 0.46 +2.4
697,370 + DZA65_RS03285 0.47 -1.0
697,452 + DZA65_RS03285 0.55 +0.0
697,453 - DZA65_RS03285 0.55 -0.1
697,514 + DZA65_RS03285 0.61 -0.3
697,514 + DZA65_RS03285 0.61 +1.4
697,514 + DZA65_RS03285 0.61 -0.7
697,514 + DZA65_RS03285 0.61 +1.6
697,515 - DZA65_RS03285 0.61 -0.5
697,515 - DZA65_RS03285 0.61 -0.5
697,515 - DZA65_RS03285 0.61 +1.5
697,515 - DZA65_RS03285 0.61 +0.4
697,515 - DZA65_RS03285 0.61 -0.3
697,570 + DZA65_RS03285 0.67 +0.4
697,570 + DZA65_RS03285 0.67 -1.3
697,570 + DZA65_RS03285 0.67 +0.6
697,571 - DZA65_RS03285 0.67 -0.5
697,575 + DZA65_RS03285 0.67 +1.0
697,575 + DZA65_RS03285 0.67 +0.3
697,576 - DZA65_RS03285 0.67 -0.7
697,596 - DZA65_RS03285 0.69 +0.4
697,704 + DZA65_RS03285 0.80 -1.4
697,704 + +0.6
697,704 + DZA65_RS03285 0.80 +0.6
697,704 + DZA65_RS03285 0.80 -0.4
697,704 + DZA65_RS03285 0.80 -0.1
697,705 - DZA65_RS03285 0.80 +0.1
697,716 + DZA65_RS03285 0.81 +0.0
697,745 + DZA65_RS03285 0.84 -1.3
697,745 + DZA65_RS03285 0.84 -0.4
697,745 + DZA65_RS03285 0.84 +0.6
697,745 + DZA65_RS03285 0.84 -1.4
697,745 + DZA65_RS03285 0.84 +0.5
697,746 - DZA65_RS03285 0.84 -0.2
697,746 - DZA65_RS03285 0.84 -0.7
697,829 + +0.2
697,829 + +0.0
697,829 + +0.9
697,829 + -0.2
697,829 + -1.0
697,830 - -0.3
697,830 - +0.4
697,906 + +0.6
697,906 + +0.8
697,906 + +0.5
697,906 + -1.7
697,906 + -0.2
697,906 + +0.4
697,906 + +0.7
697,907 - -0.7
697,907 - +0.2
697,907 - +0.2
697,907 - +0.7
697,907 - -0.3
697,907 - +0.1
697,962 + -0.4
697,993 - +0.8
697,993 - -0.2
698,051 + +0.6
698,051 + +0.1
698,052 - -0.2
698,057 + -0.1
698,129 + -0.1
698,129 + -0.4
698,137 + +0.6
698,137 + -0.4
698,137 + +0.8
698,137 + +1.1
698,137 + +0.9
698,138 - +1.6
698,138 - +0.4
698,174 + +0.8
698,175 - +0.4
698,175 - -0.0
698,183 + +2.0
698,205 + -0.7
698,206 - -0.3
698,206 - +0.3
698,206 - -0.2
698,214 + -1.4
698,214 + -0.1
698,214 + +1.0
698,214 + -1.3
698,215 - +0.7
698,215 - +0.9
698,215 - +0.6
698,215 - +0.9
698,234 + -0.3
698,267 + +0.1
698,267 + +1.3
698,275 - DZA65_RS03290 0.10 +0.5
698,413 - DZA65_RS03290 0.37 -0.2
698,467 - DZA65_RS03290 0.47 -0.1
698,467 - DZA65_RS03290 0.47 +0.5
698,467 - DZA65_RS03290 0.47 -0.5
698,467 - DZA65_RS03290 0.47 -0.2
698,544 + DZA65_RS03290 0.62 +1.4
698,549 + DZA65_RS03290 0.62 +0.2
698,549 + DZA65_RS03290 0.62 +0.5
698,571 + DZA65_RS03290 0.67 +0.8
698,572 - DZA65_RS03290 0.67 +0.6
698,572 - DZA65_RS03290 0.67 +1.1
698,599 + DZA65_RS03290 0.72 +0.1
698,599 + DZA65_RS03290 0.72 -0.2
698,600 - DZA65_RS03290 0.72 +0.5
698,600 - DZA65_RS03290 0.72 +0.2
698,637 + DZA65_RS03290 0.79 +0.5
698,637 + DZA65_RS03290 0.79 -1.0
698,637 + DZA65_RS03290 0.79 +1.4
698,638 - DZA65_RS03290 0.79 +0.9
698,638 - DZA65_RS03290 0.79 +0.8
698,638 - DZA65_RS03290 0.79 +1.2
698,696 + +0.5
698,736 - +1.4
698,827 + DZA65_RS03295 0.17 +0.5
698,828 - DZA65_RS03295 0.18 -3.1
698,828 - DZA65_RS03295 0.18 +0.5
698,899 + DZA65_RS03295 0.32 +0.5
698,899 + DZA65_RS03295 0.32 +0.9
698,899 + DZA65_RS03295 0.32 +0.8
698,899 + DZA65_RS03295 0.32 +1.0
698,899 + DZA65_RS03295 0.32 -2.2
698,899 + DZA65_RS03295 0.32 +0.6
698,900 - DZA65_RS03295 0.32 +0.3
698,900 - DZA65_RS03295 0.32 +1.3
698,904 + DZA65_RS03295 0.33 +1.2
698,905 - DZA65_RS03295 0.33 +0.9
699,018 + DZA65_RS03295 0.55 +0.6
699,018 + +2.6
699,018 + DZA65_RS03295 0.55 -1.5
699,018 + DZA65_RS03295 0.55 +1.1
699,018 + DZA65_RS03295 0.55 +1.7
699,018 + DZA65_RS03295 0.55 -0.2
699,018 + DZA65_RS03295 0.55 +0.6
699,018 + DZA65_RS03295 0.55 +1.0
699,018 + DZA65_RS03295 0.55 +0.2
699,018 + DZA65_RS03295 0.55 +3.5
699,018 + DZA65_RS03295 0.55 +0.9
699,018 + DZA65_RS03295 0.55 -0.1
699,018 + DZA65_RS03295 0.55 +0.3
699,018 + DZA65_RS03295 0.55 +0.2
699,018 + DZA65_RS03295 0.55 +1.6
699,018 + DZA65_RS03295 0.55 +1.1
699,019 - DZA65_RS03295 0.56 +1.5
699,019 - DZA65_RS03295 0.56 +1.2
699,019 - DZA65_RS03295 0.56 +0.0
699,019 - DZA65_RS03295 0.56 +1.7
699,019 - DZA65_RS03295 0.56 -0.4
699,064 + DZA65_RS03295 0.64 -0.7
699,084 + DZA65_RS03295 0.68 +0.9
699,084 + DZA65_RS03295 0.68 +2.0
699,084 + DZA65_RS03295 0.68 -1.4
699,084 + DZA65_RS03295 0.68 +0.3
699,085 - DZA65_RS03295 0.69 +0.1
699,085 - DZA65_RS03295 0.69 -1.5
699,088 - DZA65_RS03295 0.69 -0.6
699,088 - DZA65_RS03295 0.69 +0.8
699,088 - DZA65_RS03295 0.69 +0.4
699,088 - DZA65_RS03295 0.69 +0.7
699,129 + DZA65_RS03295 0.77 +1.3
699,129 + DZA65_RS03295 0.77 +1.2
699,130 - DZA65_RS03295 0.78 -1.0
699,130 - DZA65_RS03295 0.78 +0.2
699,130 - DZA65_RS03295 0.78 +0.3
699,168 + DZA65_RS03295 0.85 +1.9
699,326 + DZA65_RS03300 0.32 +1.5
699,327 - DZA65_RS03300 0.32 -0.0
699,371 + DZA65_RS03300 0.47 -0.1
699,371 + DZA65_RS03300 0.47 -0.7
699,371 + DZA65_RS03300 0.47 -1.5
699,371 + DZA65_RS03300 0.47 -0.5
699,371 + DZA65_RS03300 0.47 -0.6
699,371 + DZA65_RS03300 0.47 -0.1
699,371 + DZA65_RS03300 0.47 +0.0
699,371 + DZA65_RS03300 0.47 +0.8
699,372 - DZA65_RS03300 0.47 -1.0
699,372 - DZA65_RS03300 0.47 -0.1
699,372 - DZA65_RS03300 0.47 +0.2
699,372 - DZA65_RS03300 0.47 +0.8
699,372 - DZA65_RS03300 0.47 -1.0
699,372 - DZA65_RS03300 0.47 +0.0
699,470 + DZA65_RS03300 0.80 -1.0
699,470 + DZA65_RS03300 0.80 +1.9
699,470 + DZA65_RS03300 0.80 +0.3
699,471 - DZA65_RS03300 0.80 -0.9
699,471 - DZA65_RS03300 0.80 +1.1
699,501 - -0.6
699,561 - +1.5
699,565 + +0.3
699,565 + +0.8
699,565 + +0.6
699,566 - -0.3
699,573 + -1.0
699,573 + -0.2
699,574 - -0.8
699,574 - +0.2
699,641 + +1.2
699,646 - +0.5
699,695 - -0.5
699,712 + +0.0
699,723 + +1.1
699,727 + -1.4

Or see this region's nucleotide sequence