Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01250

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01240 and DZA65_RS01245 are separated by 311 nucleotidesDZA65_RS01245 and DZA65_RS01250 are separated by 4 nucleotidesDZA65_RS01250 and DZA65_RS01255 are separated by 82 nucleotides DZA65_RS01240: DZA65_RS01240 - YjaG family protein, at 276,593 to 277,183 _RS01240 DZA65_RS01245: DZA65_RS01245 - DNA-binding protein HU-alpha, at 277,495 to 277,767 _RS01245 DZA65_RS01250: DZA65_RS01250 - DUF1481 domain-containing protein, at 277,772 to 278,500 _RS01250 DZA65_RS01255: DZA65_RS01255 - phosphoribosylamine--glycine ligase, at 278,583 to 279,872 _RS01255 Position (kb) 277 278 279Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 276.854 kb on + strand, within DZA65_RS01240at 276.854 kb on + strand, within DZA65_RS01240at 276.855 kb on - strand, within DZA65_RS01240at 276.855 kb on - strand, within DZA65_RS01240at 276.855 kb on - strand, within DZA65_RS01240at 276.861 kb on + strand, within DZA65_RS01240at 276.861 kb on + strand, within DZA65_RS01240at 276.861 kb on + strand, within DZA65_RS01240at 276.862 kb on - strand, within DZA65_RS01240at 276.862 kb on - strand, within DZA65_RS01240at 276.862 kb on - strand, within DZA65_RS01240at 276.862 kb on - strand, within DZA65_RS01240at 276.972 kb on + strand, within DZA65_RS01240at 277.117 kb on - strand, within DZA65_RS01240at 277.117 kb on - strand, within DZA65_RS01240at 277.153 kb on + strandat 277.153 kb on + strandat 277.154 kb on - strandat 277.154 kb on - strandat 277.154 kb on - strandat 277.157 kb on - strandat 277.175 kb on + strandat 277.201 kb on + strandat 277.202 kb on - strandat 277.202 kb on - strandat 277.202 kb on - strandat 277.224 kb on + strandat 277.253 kb on + strandat 277.253 kb on + strandat 277.253 kb on + strandat 277.268 kb on + strandat 277.293 kb on + strandat 277.293 kb on + strandat 277.293 kb on + strandat 277.369 kb on + strandat 277.369 kb on + strandat 277.377 kb on + strandat 277.377 kb on + strandat 277.377 kb on + strandat 277.425 kb on + strandat 277.879 kb on + strand, within DZA65_RS01250at 277.879 kb on + strand, within DZA65_RS01250at 277.879 kb on + strand, within DZA65_RS01250at 277.879 kb on + strand, within DZA65_RS01250at 277.880 kb on - strand, within DZA65_RS01250at 277.880 kb on - strand, within DZA65_RS01250at 277.880 kb on - strand, within DZA65_RS01250at 277.888 kb on + strand, within DZA65_RS01250at 277.888 kb on + strand, within DZA65_RS01250at 277.889 kb on - strand, within DZA65_RS01250at 277.889 kb on - strandat 277.889 kb on - strand, within DZA65_RS01250at 277.907 kb on + strand, within DZA65_RS01250at 277.907 kb on + strand, within DZA65_RS01250at 277.954 kb on + strand, within DZA65_RS01250at 277.954 kb on + strandat 277.954 kb on + strand, within DZA65_RS01250at 277.964 kb on - strand, within DZA65_RS01250at 278.007 kb on + strand, within DZA65_RS01250at 278.078 kb on + strand, within DZA65_RS01250at 278.078 kb on + strand, within DZA65_RS01250at 278.078 kb on + strand, within DZA65_RS01250at 278.078 kb on + strand, within DZA65_RS01250at 278.078 kb on + strandat 278.078 kb on + strand, within DZA65_RS01250at 278.078 kb on + strandat 278.079 kb on - strand, within DZA65_RS01250at 278.079 kb on - strand, within DZA65_RS01250at 278.079 kb on - strand, within DZA65_RS01250at 278.079 kb on - strand, within DZA65_RS01250at 278.079 kb on - strand, within DZA65_RS01250at 278.079 kb on - strand, within DZA65_RS01250at 278.079 kb on - strand, within DZA65_RS01250at 278.079 kb on - strand, within DZA65_RS01250at 278.079 kb on - strand, within DZA65_RS01250at 278.079 kb on - strand, within DZA65_RS01250at 278.156 kb on + strand, within DZA65_RS01250at 278.156 kb on + strand, within DZA65_RS01250at 278.156 kb on + strand, within DZA65_RS01250at 278.156 kb on + strand, within DZA65_RS01250at 278.156 kb on + strand, within DZA65_RS01250at 278.156 kb on + strand, within DZA65_RS01250at 278.156 kb on + strand, within DZA65_RS01250at 278.156 kb on + strand, within DZA65_RS01250at 278.156 kb on + strand, within DZA65_RS01250at 278.156 kb on + strand, within DZA65_RS01250at 278.157 kb on - strand, within DZA65_RS01250at 278.157 kb on - strand, within DZA65_RS01250at 278.157 kb on - strand, within DZA65_RS01250at 278.157 kb on - strand, within DZA65_RS01250at 278.157 kb on - strand, within DZA65_RS01250at 278.157 kb on - strand, within DZA65_RS01250at 278.157 kb on - strand, within DZA65_RS01250at 278.157 kb on - strand, within DZA65_RS01250at 278.157 kb on - strand, within DZA65_RS01250at 278.157 kb on - strand, within DZA65_RS01250at 278.208 kb on + strand, within DZA65_RS01250at 278.209 kb on - strand, within DZA65_RS01250at 278.209 kb on - strand, within DZA65_RS01250at 278.216 kb on + strand, within DZA65_RS01250at 278.217 kb on - strand, within DZA65_RS01250at 278.217 kb on - strand, within DZA65_RS01250at 278.217 kb on - strand, within DZA65_RS01250at 278.434 kb on + strandat 278.435 kb on - strandat 278.435 kb on - strandat 278.435 kb on - strandat 278.498 kb on + strandat 278.498 kb on + strandat 278.499 kb on - strandat 278.512 kb on + strandat 278.512 kb on + strandat 278.512 kb on + strandat 278.512 kb on + strandat 278.512 kb on + strandat 278.513 kb on - strandat 278.513 kb on - strandat 278.513 kb on - strandat 278.513 kb on - strandat 278.521 kb on + strandat 278.521 kb on + strandat 278.671 kb on + strandat 278.694 kb on + strandat 278.781 kb on + strand, within DZA65_RS01255at 278.781 kb on + strand, within DZA65_RS01255at 278.781 kb on + strand, within DZA65_RS01255at 278.781 kb on + strand, within DZA65_RS01255at 278.781 kb on + strand, within DZA65_RS01255at 278.782 kb on - strand, within DZA65_RS01255at 278.782 kb on - strand, within DZA65_RS01255at 278.786 kb on + strand, within DZA65_RS01255at 278.786 kb on + strand, within DZA65_RS01255at 278.787 kb on - strand, within DZA65_RS01255at 278.787 kb on - strand, within DZA65_RS01255at 278.787 kb on - strand, within DZA65_RS01255at 278.834 kb on + strand, within DZA65_RS01255at 278.949 kb on + strand, within DZA65_RS01255at 278.949 kb on + strand, within DZA65_RS01255at 278.950 kb on - strandat 278.950 kb on - strand, within DZA65_RS01255at 278.950 kb on - strand, within DZA65_RS01255at 279.076 kb on + strand, within DZA65_RS01255at 279.076 kb on + strand, within DZA65_RS01255at 279.076 kb on + strand, within DZA65_RS01255at 279.076 kb on + strand, within DZA65_RS01255at 279.076 kb on + strand, within DZA65_RS01255at 279.076 kb on + strand, within DZA65_RS01255at 279.077 kb on - strand, within DZA65_RS01255at 279.077 kb on - strand, within DZA65_RS01255at 279.077 kb on - strand, within DZA65_RS01255at 279.119 kb on + strand, within DZA65_RS01255at 279.119 kb on + strand, within DZA65_RS01255at 279.119 kb on + strand, within DZA65_RS01255at 279.119 kb on + strand, within DZA65_RS01255at 279.119 kb on + strand, within DZA65_RS01255at 279.120 kb on - strand, within DZA65_RS01255at 279.120 kb on - strand, within DZA65_RS01255at 279.120 kb on - strand, within DZA65_RS01255at 279.120 kb on - strand, within DZA65_RS01255at 279.120 kb on - strand, within DZA65_RS01255at 279.120 kb on - strand, within DZA65_RS01255at 279.120 kb on - strand, within DZA65_RS01255at 279.120 kb on - strand, within DZA65_RS01255at 279.120 kb on - strand, within DZA65_RS01255at 279.175 kb on + strand, within DZA65_RS01255at 279.176 kb on - strand, within DZA65_RS01255at 279.176 kb on - strand, within DZA65_RS01255at 279.324 kb on - strand, within DZA65_RS01255at 279.440 kb on + strand, within DZA65_RS01255at 279.471 kb on - strand, within DZA65_RS01255at 279.471 kb on - strand, within DZA65_RS01255at 279.472 kb on + strand, within DZA65_RS01255at 279.472 kb on + strand, within DZA65_RS01255at 279.472 kb on + strand, within DZA65_RS01255at 279.472 kb on + strand, within DZA65_RS01255at 279.472 kb on + strandat 279.472 kb on + strand, within DZA65_RS01255at 279.472 kb on + strand, within DZA65_RS01255at 279.472 kb on + strand, within DZA65_RS01255at 279.473 kb on - strand, within DZA65_RS01255at 279.473 kb on - strand, within DZA65_RS01255at 279.473 kb on - strand, within DZA65_RS01255at 279.473 kb on - strand, within DZA65_RS01255at 279.473 kb on - strand, within DZA65_RS01255

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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276,854 + DZA65_RS01240 0.44 +0.3
276,854 + DZA65_RS01240 0.44 -0.2
276,855 - DZA65_RS01240 0.44 +0.5
276,855 - DZA65_RS01240 0.44 -1.2
276,855 - DZA65_RS01240 0.44 -0.2
276,861 + DZA65_RS01240 0.45 -3.3
276,861 + DZA65_RS01240 0.45 -0.2
276,861 + DZA65_RS01240 0.45 -0.1
276,862 - DZA65_RS01240 0.46 +0.8
276,862 - DZA65_RS01240 0.46 -0.8
276,862 - DZA65_RS01240 0.46 -1.5
276,862 - DZA65_RS01240 0.46 -1.0
276,972 + DZA65_RS01240 0.64 +0.6
277,117 - DZA65_RS01240 0.89 -0.2
277,117 - DZA65_RS01240 0.89 -0.6
277,153 + -0.2
277,153 + -0.5
277,154 - +0.1
277,154 - +0.0
277,154 - -0.2
277,157 - -0.2
277,175 + -1.2
277,201 + -1.0
277,202 - +0.8
277,202 - +0.8
277,202 - -1.3
277,224 + -0.3
277,253 + -0.2
277,253 + -0.9
277,253 + -2.0
277,268 + +1.3
277,293 + -0.8
277,293 + -0.0
277,293 + -2.2
277,369 + +0.8
277,369 + -1.1
277,377 + -0.2
277,377 + -1.4
277,377 + -1.0
277,425 + -1.8
277,879 + DZA65_RS01250 0.15 -1.0
277,879 + DZA65_RS01250 0.15 -0.6
277,879 + DZA65_RS01250 0.15 +0.3
277,879 + DZA65_RS01250 0.15 +0.2
277,880 - DZA65_RS01250 0.15 +0.6
277,880 - DZA65_RS01250 0.15 -2.0
277,880 - DZA65_RS01250 0.15 +0.4
277,888 + DZA65_RS01250 0.16 +0.1
277,888 + DZA65_RS01250 0.16 -0.1
277,889 - DZA65_RS01250 0.16 +1.2
277,889 - +1.4
277,889 - DZA65_RS01250 0.16 +0.0
277,907 + DZA65_RS01250 0.19 +0.6
277,907 + DZA65_RS01250 0.19 +1.0
277,954 + DZA65_RS01250 0.25 -0.3
277,954 + +1.1
277,954 + DZA65_RS01250 0.25 +0.6
277,964 - DZA65_RS01250 0.26 +1.8
278,007 + DZA65_RS01250 0.32 -0.5
278,078 + DZA65_RS01250 0.42 +0.4
278,078 + DZA65_RS01250 0.42 -0.2
278,078 + DZA65_RS01250 0.42 +1.1
278,078 + DZA65_RS01250 0.42 -0.9
278,078 + -1.2
278,078 + DZA65_RS01250 0.42 -0.2
278,078 + -0.5
278,079 - DZA65_RS01250 0.42 -0.0
278,079 - DZA65_RS01250 0.42 +0.7
278,079 - DZA65_RS01250 0.42 -0.5
278,079 - DZA65_RS01250 0.42 +0.8
278,079 - DZA65_RS01250 0.42 -0.8
278,079 - DZA65_RS01250 0.42 +0.8
278,079 - DZA65_RS01250 0.42 +0.8
278,079 - DZA65_RS01250 0.42 +1.0
278,079 - DZA65_RS01250 0.42 +0.8
278,079 - DZA65_RS01250 0.42 +1.4
278,156 + DZA65_RS01250 0.53 -0.6
278,156 + DZA65_RS01250 0.53 +0.1
278,156 + DZA65_RS01250 0.53 +0.4
278,156 + DZA65_RS01250 0.53 -0.2
278,156 + DZA65_RS01250 0.53 -0.5
278,156 + DZA65_RS01250 0.53 +1.2
278,156 + DZA65_RS01250 0.53 +0.9
278,156 + DZA65_RS01250 0.53 +0.6
278,156 + DZA65_RS01250 0.53 +0.1
278,156 + DZA65_RS01250 0.53 -0.2
278,157 - DZA65_RS01250 0.53 +0.4
278,157 - DZA65_RS01250 0.53 +1.1
278,157 - DZA65_RS01250 0.53 -0.4
278,157 - DZA65_RS01250 0.53 +0.5
278,157 - DZA65_RS01250 0.53 -0.9
278,157 - DZA65_RS01250 0.53 +0.7
278,157 - DZA65_RS01250 0.53 -0.8
278,157 - DZA65_RS01250 0.53 -1.5
278,157 - DZA65_RS01250 0.53 -0.2
278,157 - DZA65_RS01250 0.53 +0.8
278,208 + DZA65_RS01250 0.60 +1.3
278,209 - DZA65_RS01250 0.60 -0.0
278,209 - DZA65_RS01250 0.60 +0.3
278,216 + DZA65_RS01250 0.61 -0.4
278,217 - DZA65_RS01250 0.61 +0.8
278,217 - DZA65_RS01250 0.61 +0.1
278,217 - DZA65_RS01250 0.61 -1.6
278,434 + +1.0
278,435 - +0.2
278,435 - +0.7
278,435 - +0.3
278,498 + +0.8
278,498 + +0.4
278,499 - -0.1
278,512 + -0.4
278,512 + +0.1
278,512 + -0.2
278,512 + +0.8
278,512 + +0.3
278,513 - +0.0
278,513 - +0.2
278,513 - -0.9
278,513 - +1.6
278,521 + -0.3
278,521 + -0.6
278,671 + -0.6
278,694 + -2.4
278,781 + DZA65_RS01255 0.15 -2.6
278,781 + DZA65_RS01255 0.15 -1.6
278,781 + DZA65_RS01255 0.15 +1.4
278,781 + DZA65_RS01255 0.15 -1.9
278,781 + DZA65_RS01255 0.15 -0.2
278,782 - DZA65_RS01255 0.15 +0.5
278,782 - DZA65_RS01255 0.15 -1.2
278,786 + DZA65_RS01255 0.16 -1.0
278,786 + DZA65_RS01255 0.16 -0.3
278,787 - DZA65_RS01255 0.16 -2.1
278,787 - DZA65_RS01255 0.16 -2.5
278,787 - DZA65_RS01255 0.16 -2.6
278,834 + DZA65_RS01255 0.19 -1.8
278,949 + DZA65_RS01255 0.28 -2.2
278,949 + DZA65_RS01255 0.28 -2.3
278,950 - +0.1
278,950 - DZA65_RS01255 0.28 -2.6
278,950 - DZA65_RS01255 0.28 -2.5
279,076 + DZA65_RS01255 0.38 -1.4
279,076 + DZA65_RS01255 0.38 -0.6
279,076 + DZA65_RS01255 0.38 -1.9
279,076 + DZA65_RS01255 0.38 -1.2
279,076 + DZA65_RS01255 0.38 -2.4
279,076 + DZA65_RS01255 0.38 -1.7
279,077 - DZA65_RS01255 0.38 -2.0
279,077 - DZA65_RS01255 0.38 -3.2
279,077 - DZA65_RS01255 0.38 -1.2
279,119 + DZA65_RS01255 0.42 +1.3
279,119 + DZA65_RS01255 0.42 -0.8
279,119 + DZA65_RS01255 0.42 -0.8
279,119 + DZA65_RS01255 0.42 -1.9
279,119 + DZA65_RS01255 0.42 -1.5
279,120 - DZA65_RS01255 0.42 -2.5
279,120 - DZA65_RS01255 0.42 -2.5
279,120 - DZA65_RS01255 0.42 -3.1
279,120 - DZA65_RS01255 0.42 -1.5
279,120 - DZA65_RS01255 0.42 -0.2
279,120 - DZA65_RS01255 0.42 -2.6
279,120 - DZA65_RS01255 0.42 -0.9
279,120 - DZA65_RS01255 0.42 -1.6
279,120 - DZA65_RS01255 0.42 -2.2
279,175 + DZA65_RS01255 0.46 -1.4
279,176 - DZA65_RS01255 0.46 -0.8
279,176 - DZA65_RS01255 0.46 -1.2
279,324 - DZA65_RS01255 0.57 -2.2
279,440 + DZA65_RS01255 0.66 -1.5
279,471 - DZA65_RS01255 0.69 -0.8
279,471 - DZA65_RS01255 0.69 -1.1
279,472 + DZA65_RS01255 0.69 -1.5
279,472 + DZA65_RS01255 0.69 -1.8
279,472 + DZA65_RS01255 0.69 -1.7
279,472 + DZA65_RS01255 0.69 -1.0
279,472 + +2.4
279,472 + DZA65_RS01255 0.69 -0.8
279,472 + DZA65_RS01255 0.69 +0.2
279,472 + DZA65_RS01255 0.69 -0.4
279,473 - DZA65_RS01255 0.69 -3.1
279,473 - DZA65_RS01255 0.69 -1.4
279,473 - DZA65_RS01255 0.69 -2.3
279,473 - DZA65_RS01255 0.69 +0.4
279,473 - DZA65_RS01255 0.69 -1.7

Or see this region's nucleotide sequence