Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00830

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00825 and DZA65_RS00830 are separated by 231 nucleotidesDZA65_RS00830 and DZA65_RS00835 are separated by 2 nucleotides DZA65_RS00825: DZA65_RS00825 - ADP-glyceromanno-heptose 6-epimerase, at 185,144 to 186,076 _RS00825 DZA65_RS00830: DZA65_RS00830 - divergent polysaccharide deacetylase family protein, at 186,308 to 187,297 _RS00830 DZA65_RS00835: DZA65_RS00835 - murein hydrolase activator EnvC, at 187,300 to 188,574 _RS00835 Position (kb) 186 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 186.091 kb on - strandat 186.134 kb on - strandat 186.139 kb on - strandat 186.182 kb on + strandat 186.182 kb on + strandat 186.182 kb on + strandat 186.182 kb on + strandat 186.245 kb on + strandat 186.245 kb on + strandat 186.246 kb on - strandat 186.246 kb on - strandat 186.282 kb on + strandat 186.283 kb on - strandat 186.283 kb on - strandat 186.283 kb on - strandat 186.342 kb on + strandat 186.342 kb on + strandat 186.342 kb on + strandat 186.343 kb on - strandat 186.370 kb on + strandat 186.370 kb on + strandat 186.371 kb on - strandat 186.371 kb on - strandat 186.371 kb on - strandat 186.389 kb on + strandat 186.389 kb on + strandat 186.389 kb on + strandat 186.390 kb on - strandat 186.390 kb on - strandat 186.390 kb on - strandat 186.407 kb on - strand, within DZA65_RS00830at 186.407 kb on - strand, within DZA65_RS00830at 186.489 kb on + strand, within DZA65_RS00830at 186.489 kb on + strand, within DZA65_RS00830at 186.489 kb on + strand, within DZA65_RS00830at 186.489 kb on + strand, within DZA65_RS00830at 186.490 kb on - strand, within DZA65_RS00830at 186.490 kb on - strand, within DZA65_RS00830at 186.490 kb on - strand, within DZA65_RS00830at 186.508 kb on - strand, within DZA65_RS00830at 186.508 kb on - strand, within DZA65_RS00830at 186.650 kb on + strand, within DZA65_RS00830at 186.650 kb on + strand, within DZA65_RS00830at 186.651 kb on - strand, within DZA65_RS00830at 186.651 kb on - strand, within DZA65_RS00830at 186.651 kb on - strand, within DZA65_RS00830at 186.724 kb on + strand, within DZA65_RS00830at 186.724 kb on + strand, within DZA65_RS00830at 186.725 kb on - strand, within DZA65_RS00830at 186.799 kb on - strand, within DZA65_RS00830at 186.871 kb on + strand, within DZA65_RS00830at 186.872 kb on - strand, within DZA65_RS00830at 186.895 kb on - strand, within DZA65_RS00830at 187.063 kb on - strand, within DZA65_RS00830at 187.228 kb on + strandat 187.228 kb on + strandat 187.228 kb on + strandat 187.229 kb on - strandat 187.229 kb on - strandat 187.258 kb on + strandat 187.258 kb on + strandat 187.258 kb on + strandat 187.259 kb on - strandat 187.259 kb on - strandat 187.259 kb on - strandat 187.286 kb on + strandat 187.286 kb on + strandat 187.286 kb on + strandat 187.287 kb on - strandat 187.301 kb on + strandat 187.302 kb on - strandat 187.302 kb on - strandat 187.302 kb on - strandat 187.302 kb on - strandat 187.309 kb on + strandat 187.310 kb on - strandat 187.310 kb on - strandat 187.358 kb on + strandat 187.456 kb on - strand, within DZA65_RS00835at 187.457 kb on + strand, within DZA65_RS00835at 187.457 kb on + strand, within DZA65_RS00835at 187.457 kb on + strand, within DZA65_RS00835at 187.463 kb on + strand, within DZA65_RS00835at 187.464 kb on - strand, within DZA65_RS00835at 187.464 kb on - strand, within DZA65_RS00835at 187.464 kb on - strand, within DZA65_RS00835at 187.464 kb on - strand, within DZA65_RS00835at 187.512 kb on - strand, within DZA65_RS00835at 187.512 kb on - strand, within DZA65_RS00835at 187.562 kb on - strand, within DZA65_RS00835at 187.667 kb on + strand, within DZA65_RS00835at 187.667 kb on + strand, within DZA65_RS00835at 187.667 kb on + strand, within DZA65_RS00835at 187.668 kb on - strandat 187.668 kb on - strand, within DZA65_RS00835at 187.668 kb on - strand, within DZA65_RS00835at 187.668 kb on - strand, within DZA65_RS00835at 187.668 kb on - strand, within DZA65_RS00835at 187.668 kb on - strand, within DZA65_RS00835at 187.668 kb on - strand, within DZA65_RS00835at 187.734 kb on + strand, within DZA65_RS00835at 187.734 kb on + strand, within DZA65_RS00835at 187.734 kb on + strand, within DZA65_RS00835at 187.734 kb on + strand, within DZA65_RS00835at 187.735 kb on - strand, within DZA65_RS00835at 187.735 kb on - strand, within DZA65_RS00835at 187.735 kb on - strand, within DZA65_RS00835at 187.736 kb on + strand, within DZA65_RS00835at 187.736 kb on + strand, within DZA65_RS00835at 187.736 kb on + strand, within DZA65_RS00835at 187.736 kb on + strand, within DZA65_RS00835at 187.736 kb on + strand, within DZA65_RS00835at 187.736 kb on + strand, within DZA65_RS00835at 187.736 kb on + strand, within DZA65_RS00835at 187.736 kb on + strand, within DZA65_RS00835at 187.736 kb on + strand, within DZA65_RS00835at 187.736 kb on + strand, within DZA65_RS00835at 187.737 kb on - strand, within DZA65_RS00835at 187.737 kb on - strand, within DZA65_RS00835at 187.737 kb on - strand, within DZA65_RS00835at 187.737 kb on - strand, within DZA65_RS00835at 187.737 kb on - strand, within DZA65_RS00835at 188.099 kb on + strand, within DZA65_RS00835at 188.099 kb on + strand, within DZA65_RS00835at 188.099 kb on + strand, within DZA65_RS00835at 188.100 kb on - strand, within DZA65_RS00835at 188.100 kb on - strand, within DZA65_RS00835at 188.100 kb on - strand, within DZA65_RS00835at 188.109 kb on - strand, within DZA65_RS00835

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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186,091 - -1.2
186,134 - -1.3
186,139 - -1.5
186,182 + +0.5
186,182 + -0.5
186,182 + -2.3
186,182 + -0.8
186,245 + -1.3
186,245 + -0.3
186,246 - -1.2
186,246 - -0.4
186,282 + +0.1
186,283 - -0.2
186,283 - +2.1
186,283 - -0.5
186,342 + +1.7
186,342 + +1.4
186,342 + +0.4
186,343 - -0.5
186,370 + -0.6
186,370 + -1.0
186,371 - +0.4
186,371 - +1.0
186,371 - -0.3
186,389 + -2.2
186,389 + -0.8
186,389 + +0.8
186,390 - -1.2
186,390 - +0.0
186,390 - +0.2
186,407 - DZA65_RS00830 0.10 +1.0
186,407 - DZA65_RS00830 0.10 +1.5
186,489 + DZA65_RS00830 0.18 +0.5
186,489 + DZA65_RS00830 0.18 +1.8
186,489 + DZA65_RS00830 0.18 +1.2
186,489 + DZA65_RS00830 0.18 -0.4
186,490 - DZA65_RS00830 0.18 +0.0
186,490 - DZA65_RS00830 0.18 +0.4
186,490 - DZA65_RS00830 0.18 +0.8
186,508 - DZA65_RS00830 0.20 +0.8
186,508 - DZA65_RS00830 0.20 -0.3
186,650 + DZA65_RS00830 0.35 +0.8
186,650 + DZA65_RS00830 0.35 +0.1
186,651 - DZA65_RS00830 0.35 -1.3
186,651 - DZA65_RS00830 0.35 +1.8
186,651 - DZA65_RS00830 0.35 +0.2
186,724 + DZA65_RS00830 0.42 +0.6
186,724 + DZA65_RS00830 0.42 -0.7
186,725 - DZA65_RS00830 0.42 -1.2
186,799 - DZA65_RS00830 0.50 +0.0
186,871 + DZA65_RS00830 0.57 +0.4
186,872 - DZA65_RS00830 0.57 +0.2
186,895 - DZA65_RS00830 0.59 +0.4
187,063 - DZA65_RS00830 0.76 +0.0
187,228 + +1.2
187,228 + +0.4
187,228 + -0.9
187,229 - -0.0
187,229 - +1.2
187,258 + +0.2
187,258 + +1.3
187,258 + +1.3
187,259 - +0.4
187,259 - +0.1
187,259 - -0.2
187,286 + -1.5
187,286 + +0.3
187,286 + +0.4
187,287 - +0.4
187,301 + -0.5
187,302 - +0.2
187,302 - -0.3
187,302 - -0.2
187,302 - -0.5
187,309 + +0.9
187,310 - -0.4
187,310 - +0.8
187,358 + -0.6
187,456 - DZA65_RS00835 0.12 -0.3
187,457 + DZA65_RS00835 0.12 +0.8
187,457 + DZA65_RS00835 0.12 +0.1
187,457 + DZA65_RS00835 0.12 -0.8
187,463 + DZA65_RS00835 0.13 -2.0
187,464 - DZA65_RS00835 0.13 -0.9
187,464 - DZA65_RS00835 0.13 -0.0
187,464 - DZA65_RS00835 0.13 -0.8
187,464 - DZA65_RS00835 0.13 -2.2
187,512 - DZA65_RS00835 0.17 +0.8
187,512 - DZA65_RS00835 0.17 +1.8
187,562 - DZA65_RS00835 0.21 +0.0
187,667 + DZA65_RS00835 0.29 +2.3
187,667 + DZA65_RS00835 0.29 -0.2
187,667 + DZA65_RS00835 0.29 +0.2
187,668 - +1.4
187,668 - DZA65_RS00835 0.29 +1.4
187,668 - DZA65_RS00835 0.29 +0.2
187,668 - DZA65_RS00835 0.29 -0.2
187,668 - DZA65_RS00835 0.29 -1.6
187,668 - DZA65_RS00835 0.29 -0.8
187,668 - DZA65_RS00835 0.29 +1.1
187,734 + DZA65_RS00835 0.34 +0.8
187,734 + DZA65_RS00835 0.34 +0.8
187,734 + DZA65_RS00835 0.34 +1.8
187,734 + DZA65_RS00835 0.34 +1.3
187,735 - DZA65_RS00835 0.34 +0.4
187,735 - DZA65_RS00835 0.34 +0.0
187,735 - DZA65_RS00835 0.34 +0.6
187,736 + DZA65_RS00835 0.34 +2.0
187,736 + DZA65_RS00835 0.34 -2.3
187,736 + DZA65_RS00835 0.34 +0.2
187,736 + DZA65_RS00835 0.34 -2.9
187,736 + DZA65_RS00835 0.34 +0.6
187,736 + DZA65_RS00835 0.34 +1.3
187,736 + DZA65_RS00835 0.34 +1.0
187,736 + DZA65_RS00835 0.34 -0.2
187,736 + DZA65_RS00835 0.34 +0.4
187,736 + DZA65_RS00835 0.34 -0.4
187,737 - DZA65_RS00835 0.34 +1.4
187,737 - DZA65_RS00835 0.34 -0.6
187,737 - DZA65_RS00835 0.34 -0.8
187,737 - DZA65_RS00835 0.34 -0.8
187,737 - DZA65_RS00835 0.34 -2.0
188,099 + DZA65_RS00835 0.63 -1.5
188,099 + DZA65_RS00835 0.63 -0.2
188,099 + DZA65_RS00835 0.63 -1.0
188,100 - DZA65_RS00835 0.63 +0.2
188,100 - DZA65_RS00835 0.63 -1.2
188,100 - DZA65_RS00835 0.63 -1.8
188,109 - DZA65_RS00835 0.63 +1.8

Or see this region's nucleotide sequence