Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21180

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,577,360	+		DZA65_RS21175	0.42	+0.2
4,577,361	-		DZA65_RS21175	0.42	-1.1
4,577,361	-		DZA65_RS21175	0.42	-2.4
4,577,361	-		DZA65_RS21175	0.42	-0.3
4,577,361	-		DZA65_RS21175	0.42	-1.4
4,577,361	-		DZA65_RS21175	0.42	+0.0
4,577,361	-		DZA65_RS21175	0.42	-1.4
4,577,361	-		DZA65_RS21175	0.42	+2.2
4,577,361	-		DZA65_RS21175	0.42	+0.2
4,577,361	-		DZA65_RS21175	0.42	-0.5
4,577,393	+		DZA65_RS21175	0.45	+0.8
4,577,393	+		DZA65_RS21175	0.45	-1.0
4,577,393	+		DZA65_RS21175	0.45	+1.3
4,577,393	+		DZA65_RS21175	0.45	+1.7
4,577,393	+		DZA65_RS21175	0.45	+0.2
4,577,393	+		DZA65_RS21175	0.45	+1.1
4,577,393	+		DZA65_RS21175	0.45	-0.6
4,577,393	+		DZA65_RS21175	0.45	-0.6
4,577,394	-		DZA65_RS21175	0.45	+0.5
4,577,394	-		DZA65_RS21175	0.45	-0.2
4,577,394	-		DZA65_RS21175	0.45	-1.1
4,577,394	-		DZA65_RS21175	0.45	+0.9
4,577,394	-		DZA65_RS21175	0.45	+0.6
4,577,394	-		DZA65_RS21175	0.45	-1.1
4,577,394	-		DZA65_RS21175	0.45	+0.6
4,577,416	+		DZA65_RS21175	0.47	+1.1
4,577,416	+		DZA65_RS21175	0.47	+1.7
4,577,436	+		DZA65_RS21175	0.49	+0.1
4,577,436	+		DZA65_RS21175	0.49	+0.6
4,577,436	+		DZA65_RS21175	0.49	-1.5
4,577,436	+		DZA65_RS21175	0.49	+2.9
4,577,436	+		DZA65_RS21175	0.49	-1.5
4,577,437	-		DZA65_RS21175	0.49	-1.1
4,577,437	-		DZA65_RS21175	0.49	-0.3
4,577,451	+		DZA65_RS21175	0.51	-0.3
4,577,451	+		DZA65_RS21175	0.51	-0.2
4,577,452	-		DZA65_RS21175	0.51	-0.7
4,577,490	+		DZA65_RS21175	0.54	+0.8
4,577,490	+		DZA65_RS21175	0.54	-1.9
4,577,491	-		DZA65_RS21175	0.54	+1.3
4,577,504	-		DZA65_RS21175	0.56	-1.3
4,577,553	-		DZA65_RS21175	0.60	-1.7
4,577,553	-		DZA65_RS21175	0.60	+1.7
4,577,553	-		DZA65_RS21175	0.60	-0.7
4,577,555	+		DZA65_RS21175	0.60	-0.2
4,577,555	+		DZA65_RS21175	0.60	+2.2
4,577,556	-		DZA65_RS21175	0.60	+0.3
4,577,556	-		DZA65_RS21175	0.60	-0.8
4,577,556	-		DZA65_RS21175	0.60	+0.9
4,577,556	-		DZA65_RS21175	0.60	-0.7
4,577,587	+		DZA65_RS21175	0.63	+0.3
4,577,588	-		DZA65_RS21175	0.63	-2.4
4,577,589	+		DZA65_RS21175	0.64	-0.4
4,577,589	+		DZA65_RS21175	0.64	-1.9
4,577,589	+		DZA65_RS21175	0.64	-0.1
4,577,589	+		DZA65_RS21175	0.64	-0.2
4,577,589	+		DZA65_RS21175	0.64	+0.3
4,577,590	-		DZA65_RS21175	0.64	-0.8
4,577,590	-		DZA65_RS21175	0.64	+1.7
4,577,590	-		DZA65_RS21175	0.64	+0.2
4,577,590	-		DZA65_RS21175	0.64	-0.5
4,577,590	-		DZA65_RS21175	0.64	-2.1
4,577,590	-		DZA65_RS21175	0.64	+0.1
4,577,760	+		DZA65_RS21175	0.79	+0.1
4,577,761	-		DZA65_RS21175	0.80	-0.4
4,577,761	-		DZA65_RS21175	0.80	-1.7
4,577,761	-		DZA65_RS21175	0.80	+0.9
4,577,813	+		DZA65_RS21175	0.84	-0.4
4,577,814	-		DZA65_RS21175	0.84	+0.3
4,577,814	-		DZA65_RS21175	0.84	+0.5
4,577,814	-		DZA65_RS21175	0.84	+0.4
4,577,814	-		DZA65_RS21175	0.84	+0.9
4,577,814	-		DZA65_RS21175	0.84	-0.5
4,577,814	-		DZA65_RS21175	0.84	-1.1
4,577,845	+		DZA65_RS21175	0.87	+1.4
4,577,845	+		DZA65_RS21175	0.87	+0.5
4,577,845	+		DZA65_RS21175	0.87	-0.5
4,577,845	+		DZA65_RS21175	0.87	-0.5
4,577,845	+		DZA65_RS21175	0.87	+1.4
4,577,845	+		DZA65_RS21175	0.87	+0.6
4,577,845	+		DZA65_RS21175	0.87	-0.4
4,577,846	-		DZA65_RS21175	0.87	-0.1
4,577,846	-		DZA65_RS21175	0.87	+0.4
4,577,846	-		DZA65_RS21175	0.87	-0.9
4,577,846	-		DZA65_RS21175	0.87	-1.9
4,577,846	-		DZA65_RS21175	0.87	-1.7
4,577,846	-		DZA65_RS21175	0.87	+0.1
4,577,879	+				-2.1
4,577,879	+				+0.8
4,577,880	-				+0.5
4,577,882	+				-2.7
4,577,883	-				-0.5
4,577,921	+				+0.9
4,577,921	+				-0.3
4,577,922	-				-0.1
4,577,922	-				+1.2
4,577,922	-				-0.0
4,577,922	-				-0.7
4,577,922	-				-0.1
4,577,922	-				+0.9
4,577,952	+				+0.9
4,577,953	-				+0.1
4,577,969	+				-0.5
4,577,970	-				+0.8
4,577,975	-				-0.9
4,577,975	-				-1.0
4,578,001	-				-1.4
4,578,029	-				-0.8
4,578,040	+				-1.1
4,578,043	+				+0.6
4,578,044	-				-1.1
4,578,076	+				+1.2
4,578,077	-				+0.6
4,578,083	-				+0.3
4,578,083	-				+0.0
4,578,083	-				-0.6
4,578,087	+				+0.2
4,578,087	+				-1.1
4,578,087	+				-2.0
4,578,087	+				-1.7
4,578,089	+				+0.1
4,578,089	+				-1.3
4,578,126	+				+0.4
4,578,127	-				+0.2
4,578,127	-				+0.4
4,578,128	+				+0.9
4,578,165	-				-0.4
4,578,165	-				-0.9
4,578,165	-				+0.3
4,578,194	+				-0.5
4,578,195	-				+0.4
4,578,195	-				-0.7
4,578,195	-				-1.4
4,578,230	+				+1.2
4,578,230	+				+0.1
4,578,230	+				+0.9
4,578,230	+				-0.1
4,578,230	+				-0.1
4,578,230	+				-0.8
4,578,230	+				-0.2
4,578,230	+				+0.8
4,578,230	+				-0.9
4,578,230	+				+1.3
4,578,230	+				-1.2
4,578,230	+				-0.3
4,578,230	+				-0.1
4,578,230	+				+1.2
4,578,230	+				-0.6
4,578,230	+				-0.1
4,578,231	-				+0.1
4,578,231	-				-0.5
4,578,231	-				+1.1
4,578,231	-				+1.1
4,578,231	-				+0.9
4,578,231	-				-0.3
4,578,231	-				-0.4
4,578,231	-				+1.3
4,578,231	-				-1.4
4,578,231	-				+0.6
4,578,231	-				+0.6
4,578,239	-				-0.5
4,578,251	+				+0.3
4,578,251	+				+0.5
4,578,251	+				+0.0
4,578,252	-				+2.6
4,578,252	-				+0.3
4,578,255	+				+0.3
4,578,300	+				+0.7
4,578,301	-				-1.0
4,578,309	-				-0.1
4,578,309	-				+0.1
4,578,325	-				-0.1
4,578,345	+				+1.1
4,578,348	+				+0.5
4,578,348	+				+0.8
4,578,349	-				-1.3
4,578,364	+				-0.2
4,578,364	+				+0.5
4,578,377	-		DZA65_RS21180	0.11	+2.1
4,578,391	+		DZA65_RS21180	0.13	+1.2
4,578,391	+		DZA65_RS21180	0.13	-0.0
4,578,391	+		DZA65_RS21180	0.13	+0.7
4,578,392	-		DZA65_RS21180	0.13	-1.4
4,578,392	-		DZA65_RS21180	0.13	+0.9
4,578,399	+		DZA65_RS21180	0.14	-0.8
4,578,400	-		DZA65_RS21180	0.14	-0.4
4,578,437	+		DZA65_RS21180	0.19	+0.0
4,578,437	+		DZA65_RS21180	0.19	-2.0
4,578,437	+		DZA65_RS21180	0.19	+1.9
4,578,437	+		DZA65_RS21180	0.19	-0.1
4,578,437	+		DZA65_RS21180	0.19	-1.8
4,578,438	-		DZA65_RS21180	0.19	+0.9
4,578,438	-		DZA65_RS21180	0.19	-2.3
4,578,438	-		DZA65_RS21180	0.19	-0.1
4,578,438	-				+1.3
4,578,438	-		DZA65_RS21180	0.19	-0.7
4,578,439	+		DZA65_RS21180	0.19	+0.1
4,578,439	+		DZA65_RS21180	0.19	-1.7
4,578,439	+		DZA65_RS21180	0.19	-1.7
4,578,440	-		DZA65_RS21180	0.19	+0.0
4,578,440	-		DZA65_RS21180	0.19	-0.4
4,578,440	-		DZA65_RS21180	0.19	-0.3
4,578,440	-		DZA65_RS21180	0.19	+1.5
4,578,440	-		DZA65_RS21180	0.19	-0.1
4,578,456	+		DZA65_RS21180	0.21	-1.1
4,578,464	+		DZA65_RS21180	0.22	+0.8
4,578,464	+		DZA65_RS21180	0.22	+0.9
4,578,464	+		DZA65_RS21180	0.22	-0.5
4,578,465	-				+1.9
4,578,465	-		DZA65_RS21180	0.22	+0.6
4,578,465	-		DZA65_RS21180	0.22	-0.0
4,578,574	+		DZA65_RS21180	0.35	-0.7
4,578,575	-		DZA65_RS21180	0.36	-2.3
4,578,586	+		DZA65_RS21180	0.37	-1.7
4,578,620	+		DZA65_RS21180	0.41	+0.7
4,578,638	+		DZA65_RS21180	0.43	+0.8
4,578,638	+		DZA65_RS21180	0.43	-0.1
4,578,638	+		DZA65_RS21180	0.43	-0.4
4,578,638	+		DZA65_RS21180	0.43	-1.4
4,578,638	+		DZA65_RS21180	0.43	-0.4
4,578,638	+		DZA65_RS21180	0.43	+1.6
4,578,639	-		DZA65_RS21180	0.43	+0.0
4,578,639	-		DZA65_RS21180	0.43	-0.4
4,578,639	-		DZA65_RS21180	0.43	+0.0
4,578,639	-		DZA65_RS21180	0.43	+2.3
4,578,647	+		DZA65_RS21180	0.44	-0.3
4,578,647	+		DZA65_RS21180	0.44	-0.7
4,578,647	+		DZA65_RS21180	0.44	+1.6
4,578,648	-		DZA65_RS21180	0.45	+0.9
4,578,648	-		DZA65_RS21180	0.45	-0.1
4,578,694	+		DZA65_RS21180	0.50	+1.9
4,578,695	-		DZA65_RS21180	0.50	+1.7
4,578,706	+		DZA65_RS21180	0.52	+1.2
4,578,706	+		DZA65_RS21180	0.52	-0.7
4,578,712	+		DZA65_RS21180	0.52	-0.6
4,578,713	-		DZA65_RS21180	0.53	-0.0
4,578,713	-		DZA65_RS21180	0.53	+3.2
4,578,747	+		DZA65_RS21180	0.57	-0.5
4,578,747	+		DZA65_RS21180	0.57	-0.4
4,578,747	+		DZA65_RS21180	0.57	+1.4
4,578,747	+		DZA65_RS21180	0.57	+0.3
4,578,747	+		DZA65_RS21180	0.57	-1.1
4,578,747	+		DZA65_RS21180	0.57	-1.8
4,578,748	-		DZA65_RS21180	0.57	-0.1
4,578,748	-		DZA65_RS21180	0.57	-0.5
4,578,748	-		DZA65_RS21180	0.57	+0.4
4,578,748	-		DZA65_RS21180	0.57	-0.0
4,578,748	-		DZA65_RS21180	0.57	-0.6
4,578,797	+				+3.2
4,578,797	+		DZA65_RS21180	0.63	-0.7
4,578,797	+		DZA65_RS21180	0.63	-0.8
4,578,797	+		DZA65_RS21180	0.63	+2.5
4,578,798	-		DZA65_RS21180	0.63	-0.7
4,578,798	-		DZA65_RS21180	0.63	+1.9
4,578,829	+		DZA65_RS21180	0.67	-0.5
4,578,829	+		DZA65_RS21180	0.67	-2.1
4,578,835	+		DZA65_RS21180	0.68	+0.9
4,578,851	+		DZA65_RS21180	0.70	-0.1
4,578,852	-		DZA65_RS21180	0.70	-0.7
4,578,852	-		DZA65_RS21180	0.70	-0.7
4,578,852	-		DZA65_RS21180	0.70	+0.1
4,578,852	-		DZA65_RS21180	0.70	-0.4
4,578,886	+		DZA65_RS21180	0.74	-1.1
4,578,887	-		DZA65_RS21180	0.74	+0.3
4,578,906	+		DZA65_RS21180	0.76	-0.4
4,578,907	-		DZA65_RS21180	0.77	+0.1
4,578,973	+				-0.7
4,578,973	+		DZA65_RS21180	0.85	-1.0
4,578,973	+		DZA65_RS21180	0.85	+2.0
4,578,981	+		DZA65_RS21180	0.86	-0.4
4,579,005	+		DZA65_RS21180	0.89	+1.8
4,579,005	+		DZA65_RS21180	0.89	+1.3
4,579,005	+		DZA65_RS21180	0.89	-0.3
4,579,005	+		DZA65_RS21180	0.89	+1.9
4,579,005	+		DZA65_RS21180	0.89	+1.2
4,579,006	-		DZA65_RS21180	0.89	+0.1
4,579,006	-		DZA65_RS21180	0.89	+0.1
4,579,032	+				-0.7
4,579,032	+				+0.3
4,579,033	-				+0.2
4,579,033	-				-0.7
4,579,052	+				-1.1
4,579,052	+				+1.1
4,579,052	+				+0.3
4,579,053	-				-1.6
4,579,053	-				+0.4
4,579,094	+				+0.1
4,579,094	+				-0.3
4,579,095	-				+0.1
4,579,095	-				+0.2
4,579,095	-				-0.5
4,579,095	-				+0.3
4,579,095	-				-1.9
4,579,137	+				-1.7
4,579,137	+				+0.5
4,579,137	+				-0.1
4,579,138	-				+2.9
4,579,138	-				-2.0
4,579,138	-				-0.1
4,579,138	-				-0.8
4,579,138	-				+0.1
4,579,138	-				+0.3
4,579,138	-				+1.4
4,579,138	-				+0.9
4,579,138	-				+1.4
4,579,149	-				+1.1
4,579,170	-				+0.1
4,579,170	-				+0.9
4,579,188	+				+1.3
4,579,189	-				-0.9
4,579,189	-				+0.5
4,579,296	-				+0.6
4,579,296	-				-0.7
4,579,735	+				+0.6
4,579,736	-				-0.7
4,579,736	-				-0.3
4,579,736	-				-0.7
4,579,769	+				-0.1
4,579,770	-				-1.1
4,579,770	-				-0.5
4,579,801	+				-0.8
4,579,802	-				-0.7
4,579,802	-				+0.6
4,579,835	+				-1.7
4,579,855	+				+0.3
4,579,856	-				+0.6
4,579,856	-				+0.5
4,579,856	-				-0.1
4,579,924	+				-0.4
4,579,924	+				-0.6
4,579,924	+				-0.7
4,579,924	+				+1.7
4,579,924	+				+0.9
4,579,924	+				+1.3
4,579,924	+				-0.5
4,579,924	+				-1.7
4,579,924	+				-1.7
4,579,924	+				+0.2
4,579,924	+				+1.2
4,579,924	+				-1.0
4,579,924	+				-0.2
4,579,925	-				-0.7
4,579,925	-				+0.5
4,579,925	-				+0.9
4,579,925	-				-0.6
4,579,925	-				-0.5
4,579,925	-				+1.5
4,579,925	-				-1.1
4,579,925	-				+1.9
4,579,925	-				+2.1
4,579,925	-				+0.3
4,579,925	-				-0.3
4,579,925	-				-0.4
4,579,925	-				+0.9
4,579,925	-				-0.4
4,579,925	-				-0.2
4,579,925	-				-1.3
4,579,925	-				+1.2
4,579,925	-				+0.9
4,579,966	+		DZA65_RS21205	0.12	-0.1
4,579,966	+		DZA65_RS21205	0.12	+1.3
4,579,966	+		DZA65_RS21205	0.12	-0.4
4,579,967	-		DZA65_RS21205	0.12	+0.5
4,579,967	-		DZA65_RS21205	0.12	+0.3
4,579,967	-		DZA65_RS21205	0.12	-1.9
4,579,967	-		DZA65_RS21205	0.12	-1.1
4,579,988	+		DZA65_RS21205	0.13	-0.5
4,579,989	-		DZA65_RS21205	0.14	+2.1
4,579,989	-		DZA65_RS21205	0.14	+1.5
4,579,989	-		DZA65_RS21205	0.14	-2.0
4,580,050	-		DZA65_RS21205	0.18	-0.1
4,580,050	-		DZA65_RS21205	0.18	-1.7
4,580,050	-		DZA65_RS21205	0.18	-0.1
4,580,050	-		DZA65_RS21205	0.18	+0.0