Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17200

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,711,009	+		DZA65_RS17190	0.53	-0.4
3,711,010	-		DZA65_RS17190	0.53	-0.2
3,711,010	-		DZA65_RS17190	0.53	+1.1
3,711,069	-		DZA65_RS17190	0.66	-0.4
3,711,141	+		DZA65_RS17190	0.82	-0.9
3,711,141	+		DZA65_RS17190	0.82	-0.7
3,711,141	+		DZA65_RS17190	0.82	-1.4
3,711,141	+		DZA65_RS17190	0.82	-0.3
3,711,142	-		DZA65_RS17190	0.82	+1.7
3,711,142	-		DZA65_RS17190	0.82	-0.6
3,711,142	-		DZA65_RS17190	0.82	+0.7
3,711,144	+		DZA65_RS17190	0.83	-0.9
3,711,144	+		DZA65_RS17190	0.83	+0.8
3,711,144	+		DZA65_RS17190	0.83	-0.0
3,711,255	+				+0.1
3,711,255	+				-0.3
3,711,256	-				+0.2
3,711,263	+				-0.4
3,711,263	+				+0.7
3,711,263	+				-1.4
3,711,263	+				-2.0
3,711,264	-				-0.9
3,711,264	-				-0.1
3,711,264	-				+1.0
3,711,299	+				-1.4
3,711,299	+				-0.6
3,711,299	+				-0.2
3,711,299	+				-0.4
3,711,299	+				+0.1
3,711,300	-				+0.1
3,711,300	-				-0.0
3,711,300	-				+1.0
3,711,309	+				-1.6
3,711,310	-				+1.1
3,711,346	+				+0.8
3,711,346	+				-0.4
3,711,346	+				+0.2
3,711,346	+				-0.3
3,711,347	-				+0.6
3,711,347	-				-0.2
3,711,347	-				-2.8
3,711,347	-				+0.0
3,711,347	-				-0.2
3,711,347	-				+2.1
3,711,362	+				+0.9
3,711,362	+				-0.2
3,711,362	+				-1.8
3,711,362	+				+2.6
3,711,362	+				-0.2
3,711,362	+				+0.6
3,711,362	+				-0.3
3,711,362	+				+0.6
3,711,363	-				-0.2
3,711,363	-				-0.8
3,711,363	-				+1.6
3,711,363	-				-0.8
3,711,363	-				+0.6
3,711,363	-				-0.8
3,711,363	-				+0.1
3,711,374	+				-0.3
3,711,374	+				-1.3
3,711,374	+				-0.4
3,711,374	+				-2.6
3,711,374	+				+0.9
3,711,374	+				+0.2
3,711,374	+				+0.3
3,711,374	+				+0.3
3,711,375	-				+1.3
3,711,375	-				-1.3
3,711,375	-				-0.7
3,711,375	-				+0.1
3,711,375	-				+1.3
3,711,375	-				-1.3
3,711,375	-				-0.8
3,711,377	+				-0.0
3,711,378	-				-0.3
3,711,378	-				-1.3
3,711,378	-				-0.4
3,711,378	-				-1.0
3,711,378	-				+0.6
3,711,587	+		DZA65_RS17195	0.64	-0.0
3,711,587	+		DZA65_RS17195	0.64	+0.6
3,711,588	-		DZA65_RS17195	0.64	-1.8
3,711,620	+		DZA65_RS17195	0.74	-0.0
3,711,621	-		DZA65_RS17195	0.74	-0.3
3,711,621	-		DZA65_RS17195	0.74	+0.7
3,711,627	+		DZA65_RS17195	0.76	+0.9
3,711,627	+		DZA65_RS17195	0.76	+0.1
3,711,627	+		DZA65_RS17195	0.76	-2.6
3,711,628	-		DZA65_RS17195	0.76	-1.0
3,711,628	-		DZA65_RS17195	0.76	+0.7
3,711,628	-		DZA65_RS17195	0.76	+0.6
3,711,628	-		DZA65_RS17195	0.76	-0.3
3,711,628	-		DZA65_RS17195	0.76	+0.6
3,711,692	+				+0.9
3,711,702	+				-2.4
3,711,702	+				+1.8
3,711,703	-				+0.8
3,711,703	-				-2.3
3,711,772	+				+0.4
3,711,785	+				-0.0
3,711,785	+				-0.4
3,711,853	+				-0.3
3,711,853	+				-2.0
3,711,891	+				+1.1
3,711,892	-				+0.4
3,712,070	+		DZA65_RS17200	0.22	-0.0
3,712,070	+		DZA65_RS17200	0.22	-2.4
3,712,088	-		DZA65_RS17200	0.24	+0.7
3,712,166	+		DZA65_RS17200	0.31	-2.9
3,712,166	+		DZA65_RS17200	0.31	+0.9
3,712,166	+		DZA65_RS17200	0.31	-0.9
3,712,166	+		DZA65_RS17200	0.31	+1.6
3,712,167	-		DZA65_RS17200	0.31	-1.0
3,712,167	-		DZA65_RS17200	0.31	-0.9
3,712,167	-		DZA65_RS17200	0.31	-0.0
3,712,167	-		DZA65_RS17200	0.31	+0.7
3,712,167	-		DZA65_RS17200	0.31	-0.8
3,712,167	-		DZA65_RS17200	0.31	+0.8
3,712,167	-		DZA65_RS17200	0.31	+1.8
3,712,182	+		DZA65_RS17200	0.33	-1.6
3,712,183	-		DZA65_RS17200	0.33	+0.1
3,712,217	+		DZA65_RS17200	0.36	-0.4
3,712,217	+		DZA65_RS17200	0.36	+0.1
3,712,218	-		DZA65_RS17200	0.36	-0.3
3,712,218	-		DZA65_RS17200	0.36	+1.6
3,712,218	-		DZA65_RS17200	0.36	+0.6
3,712,218	-		DZA65_RS17200	0.36	+0.6
3,712,323	+		DZA65_RS17200	0.46	+1.6
3,712,323	+		DZA65_RS17200	0.46	-1.0
3,712,323	+		DZA65_RS17200	0.46	-0.4
3,712,324	-		DZA65_RS17200	0.46	-0.7
3,712,324	-		DZA65_RS17200	0.46	-0.4
3,712,324	-		DZA65_RS17200	0.46	-0.8
3,712,324	-		DZA65_RS17200	0.46	-0.1
3,712,354	+		DZA65_RS17200	0.49	-1.4
3,712,354	+		DZA65_RS17200	0.49	+1.0
3,712,354	+		DZA65_RS17200	0.49	-1.3
3,712,355	-		DZA65_RS17200	0.49	+0.7
3,712,420	+		DZA65_RS17200	0.55	-0.3
3,712,421	-				-0.4
3,712,421	-		DZA65_RS17200	0.55	-0.2
3,712,487	+		DZA65_RS17200	0.62	+1.2
3,712,487	+		DZA65_RS17200	0.62	-0.8
3,712,487	+		DZA65_RS17200	0.62	+1.4
3,712,488	-		DZA65_RS17200	0.62	+0.2
3,712,488	-		DZA65_RS17200	0.62	+0.7
3,712,590	+		DZA65_RS17200	0.71	+1.2
3,712,606	+		DZA65_RS17200	0.73	-0.6
3,712,606	+		DZA65_RS17200	0.73	-0.8
3,712,607	-		DZA65_RS17200	0.73	+1.1
3,712,607	-		DZA65_RS17200	0.73	-0.9
3,712,607	-		DZA65_RS17200	0.73	-0.4
3,712,607	-		DZA65_RS17200	0.73	+0.6
3,712,607	-		DZA65_RS17200	0.73	+2.0
3,712,708	+		DZA65_RS17200	0.82	+0.1
3,712,709	-		DZA65_RS17200	0.82	+0.6
3,712,709	-		DZA65_RS17200	0.82	-2.4
3,712,751	-		DZA65_RS17200	0.86	+1.3
3,712,751	-		DZA65_RS17200	0.86	+1.8
3,712,764	+		DZA65_RS17200	0.88	+1.9
3,712,764	+		DZA65_RS17200	0.88	+0.5
3,712,764	+		DZA65_RS17200	0.88	-1.4
3,712,870	+				-0.4
3,712,871	-				+0.7
3,712,876	+				-0.1
3,712,896	+				+0.4
3,712,897	-				+1.3
3,712,901	+				+0.2
3,712,901	+				-0.1
3,712,901	+				-0.8
3,712,901	+				+0.6
3,712,901	+				-1.9
3,712,901	+				-0.8
3,712,901	+				+1.0
3,712,901	+				+1.1
3,712,901	+				-1.1
3,712,901	+				+0.6
3,712,901	+				+0.2
3,712,901	+				-0.1
3,712,902	-				+0.1
3,712,902	-				+1.9
3,712,902	-				+0.4
3,712,902	-				-0.4
3,712,902	-				-1.4
3,712,902	-				+0.8
3,712,905	+				-0.4
3,712,905	+				-2.0
3,712,905	+				-0.6
3,712,905	+				-0.8
3,712,905	+				-2.3
3,712,906	-				-0.1
3,713,025	+				+1.9
3,713,025	+				+0.6
3,713,025	+				+1.1
3,713,025	+				+0.2
3,713,025	+				-1.3
3,713,025	+				-1.9
3,713,025	+				-0.6
3,713,026	-				-0.3
3,713,026	-				+0.1
3,713,026	-				-1.3
3,713,026	-				-0.1
3,713,026	-				-3.3
3,713,026	-				+0.8
3,713,035	+				+0.5
3,713,036	-				+0.2
3,713,145	+		DZA65_RS17205	0.15	-0.3
3,713,156	+		DZA65_RS17205	0.16	-0.4
3,713,156	+		DZA65_RS17205	0.16	-1.6
3,713,156	+		DZA65_RS17205	0.16	-0.6
3,713,156	+		DZA65_RS17205	0.16	+1.6
3,713,156	+		DZA65_RS17205	0.16	-1.0
3,713,157	-		DZA65_RS17205	0.16	+0.6
3,713,157	-		DZA65_RS17205	0.16	-0.8
3,713,163	-		DZA65_RS17205	0.16	-0.4
3,713,173	+		DZA65_RS17205	0.17	-1.6
3,713,173	+		DZA65_RS17205	0.17	-0.2
3,713,173	+		DZA65_RS17205	0.17	-0.3
3,713,173	+		DZA65_RS17205	0.17	-0.0
3,713,173	+		DZA65_RS17205	0.17	-0.4
3,713,174	-		DZA65_RS17205	0.17	-0.4
3,713,174	-		DZA65_RS17205	0.17	+0.3
3,713,174	-		DZA65_RS17205	0.17	+0.6
3,713,271	+		DZA65_RS17205	0.23	-1.3
3,713,272	-		DZA65_RS17205	0.23	+0.6
3,713,437	-		DZA65_RS17205	0.33	-2.8
3,713,437	-		DZA65_RS17205	0.33	-0.9
3,713,474	+		DZA65_RS17205	0.35	+0.5
3,713,474	+		DZA65_RS17205	0.35	+1.4
3,713,474	+		DZA65_RS17205	0.35	+0.4
3,713,475	-		DZA65_RS17205	0.36	-1.8
3,713,475	-		DZA65_RS17205	0.36	-0.1
3,713,475	-		DZA65_RS17205	0.36	-0.9
3,713,475	-		DZA65_RS17205	0.36	-2.0
3,713,475	-		DZA65_RS17205	0.36	-0.0
3,713,527	+		DZA65_RS17205	0.39	+0.8
3,713,528	-		DZA65_RS17205	0.39	+0.6
3,713,579	+		DZA65_RS17205	0.42	-0.4
3,713,579	+		DZA65_RS17205	0.42	+0.1
3,713,580	-		DZA65_RS17205	0.42	-1.4
3,713,580	-		DZA65_RS17205	0.42	-0.4
3,713,580	-		DZA65_RS17205	0.42	-1.4
3,713,648	+		DZA65_RS17205	0.46	+0.6
3,713,648	+		DZA65_RS17205	0.46	+0.5
3,713,649	-		DZA65_RS17205	0.46	+0.3
3,713,649	-		DZA65_RS17205	0.46	+0.2
3,713,699	+		DZA65_RS17205	0.49	+0.6
3,713,760	-		DZA65_RS17205	0.53	-0.4
3,713,760	-		DZA65_RS17205	0.53	+0.6
3,713,795	+		DZA65_RS17205	0.55	-0.0
3,713,796	-		DZA65_RS17205	0.55	+1.0
3,713,854	+		DZA65_RS17205	0.59	-0.4
3,713,854	+		DZA65_RS17205	0.59	+1.1
3,713,854	+		DZA65_RS17205	0.59	-0.3
3,713,854	+		DZA65_RS17205	0.59	+0.4
3,713,854	+		DZA65_RS17205	0.59	+0.6
3,713,855	-		DZA65_RS17205	0.59	-2.6
3,713,855	-		DZA65_RS17205	0.59	-0.1
3,713,881	+		DZA65_RS17205	0.61	-0.0
3,713,882	-		DZA65_RS17205	0.61	-0.4