Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15215

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Norland
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3,304,695	-	DZA65_RS15200	0.76	-0.6
3,304,695	-	DZA65_RS15200	0.76	+0.8
3,304,721	+	DZA65_RS15200	0.88	+0.4
3,304,819	+	DZA65_RS15205	0.22	-0.4
3,304,826	+	DZA65_RS15205	0.24	+0.8
3,304,827	-	DZA65_RS15205	0.25	+0.0
3,304,827	-	DZA65_RS15205	0.25	-0.9
3,304,827	-	DZA65_RS15205	0.25	-0.6
3,304,873	+	DZA65_RS15205	0.38	+1.5
3,304,874	-	DZA65_RS15205	0.39	-0.7
3,304,874	-	DZA65_RS15205	0.39	-1.2
3,304,916	+	DZA65_RS15205	0.52	-1.4
3,304,981	+	DZA65_RS15205	0.71	-1.9
3,304,981	+	DZA65_RS15205	0.71	+0.1
3,304,981	+	DZA65_RS15205	0.71	-0.2
3,304,981	+	DZA65_RS15205	0.71	+0.4
3,304,981	+	DZA65_RS15205	0.71	-2.2
3,304,981	+	DZA65_RS15205	0.71	-0.0
3,304,981	+	DZA65_RS15205	0.71	-0.3
3,304,981	+	DZA65_RS15205	0.71	-0.3
3,304,981	+	DZA65_RS15205	0.71	-0.1
3,304,981	+	DZA65_RS15205	0.71	+1.3
3,304,981	+	DZA65_RS15205	0.71	+1.6
3,304,981	+	DZA65_RS15205	0.71	+2.3
3,304,981	+	DZA65_RS15205	0.71	-0.2
3,304,982	-	DZA65_RS15205	0.72	+1.2
3,304,982	-	DZA65_RS15205	0.72	-0.6
3,304,982	-	DZA65_RS15205	0.72	-0.9
3,304,982	-	DZA65_RS15205	0.72	+0.1
3,304,982	-	DZA65_RS15205	0.72	+0.4
3,304,982	-	DZA65_RS15205	0.72	+1.8
3,304,982	-	DZA65_RS15205	0.72	-0.3
3,305,018	+	DZA65_RS15205	0.82	+0.3
3,305,018	+	DZA65_RS15205	0.82	-0.4
3,305,018	+	DZA65_RS15205	0.82	-1.4
3,305,018	+	DZA65_RS15205	0.82	-0.5
3,305,018	+	DZA65_RS15205	0.82	-1.1
3,305,018	+	DZA65_RS15205	0.82	-1.6
3,305,019	-	DZA65_RS15205	0.83	+0.0
3,305,019	-	DZA65_RS15205	0.83	+0.4
3,305,019	-	DZA65_RS15205	0.83	-0.2
3,305,019	-	DZA65_RS15205	0.83	+0.8
3,305,020	+	DZA65_RS15205	0.83	+0.4
3,305,020	+	DZA65_RS15205	0.83	-0.6
3,305,020	+	DZA65_RS15205	0.83	+0.2
3,305,020	+	DZA65_RS15205	0.83	+0.1
3,305,020	+	DZA65_RS15205	0.83	+1.1
3,305,020	+	DZA65_RS15205	0.83	-0.2
3,305,020	+	DZA65_RS15205	0.83	+0.1
3,305,020	+	DZA65_RS15205	0.83	+1.1
3,305,021	-	DZA65_RS15205	0.83	-0.6
3,305,021	-	DZA65_RS15205	0.83	+0.4
3,305,021	-	DZA65_RS15205	0.83	+0.4
3,305,021	-	DZA65_RS15205	0.83	+0.4
3,305,069	+			+1.0
3,305,069	+			-1.8
3,305,070	-			+0.6
3,305,070	-			+0.4
3,305,076	+			+0.9
3,305,076	+			+0.2
3,305,077	-			+1.7
3,305,077	-			-0.0
3,305,096	+			+0.2
3,305,097	-			+0.7
3,305,281	+	DZA65_RS15210	0.45	+0.0
3,305,281	+	DZA65_RS15210	0.45	-0.1
3,305,281	+	DZA65_RS15210	0.45	+1.0
3,305,281	+	DZA65_RS15210	0.45	-1.2
3,305,281	+	DZA65_RS15210	0.45	-0.8
3,305,282	-	DZA65_RS15210	0.45	+0.4
3,305,395	+	DZA65_RS15210	0.69	+1.8
3,305,395	+	DZA65_RS15210	0.69	+0.8
3,305,395	+	DZA65_RS15210	0.69	+0.2
3,305,396	-	DZA65_RS15210	0.69	-1.6
3,305,396	-	DZA65_RS15210	0.69	-1.4
3,305,399	+	DZA65_RS15210	0.70	-0.4
3,305,399	+	DZA65_RS15210	0.70	-0.1
3,305,399	+	DZA65_RS15210	0.70	+0.5
3,305,399	+	DZA65_RS15210	0.70	-0.6
3,305,399	+	DZA65_RS15210	0.70	+0.1
3,305,399	+	DZA65_RS15210	0.70	+2.4
3,305,399	+	DZA65_RS15210	0.70	+1.8
3,305,399	+	DZA65_RS15210	0.70	+0.1
3,305,399	+	DZA65_RS15210	0.70	-0.0
3,305,399	+	DZA65_RS15210	0.70	-2.5
3,305,400	-	DZA65_RS15210	0.70	+0.8
3,305,400	-	DZA65_RS15210	0.70	+2.1
3,305,400	-	DZA65_RS15210	0.70	+0.4
3,305,400	-	DZA65_RS15210	0.70	+1.8
3,305,403	+	DZA65_RS15210	0.71	-1.1
3,305,404	-	DZA65_RS15210	0.71	-1.2
3,305,416	+	DZA65_RS15210	0.74	-0.9
3,305,417	-	DZA65_RS15210	0.74	+0.6
3,305,417	-	DZA65_RS15210	0.74	-0.6
3,305,417	-	DZA65_RS15210	0.74	+0.1
3,305,417	-	DZA65_RS15210	0.74	+1.2
3,305,460	+	DZA65_RS15210	0.83	+0.7
3,305,460	+	DZA65_RS15210	0.83	+1.0
3,305,491	+			-0.3
3,305,491	+			+0.8
3,305,492	-			-0.0
3,305,524	+			+0.2
3,305,525	-			-0.4
3,305,527	+			-0.8
3,305,528	-			-0.9
3,305,528	-			+0.7
3,305,554	+			+1.3
3,305,560	+			+1.1
3,305,561	-			-0.7
3,305,619	-			+0.0
3,305,655	-	DZA65_RS15215	0.20	+0.1
3,305,691	+	DZA65_RS15215	0.39	+0.1
3,305,756	+	DZA65_RS15215	0.72	-1.1
3,305,760	+	DZA65_RS15215	0.74	-0.4
3,305,760	+	DZA65_RS15215	0.74	-0.6
3,305,760	+	DZA65_RS15215	0.74	-0.2
3,305,760	+	DZA65_RS15215	0.74	+0.4
3,305,760	+	DZA65_RS15215	0.74	-0.0
3,305,760	+	DZA65_RS15215	0.74	-1.9
3,305,760	+	DZA65_RS15215	0.74	-0.3
3,305,760	+	DZA65_RS15215	0.74	+0.3
3,305,761	-	DZA65_RS15215	0.75	-0.8
3,305,780	+	DZA65_RS15215	0.85	-1.3
3,305,824	+			-0.8
3,305,871	+			-0.6
3,305,871	+			-1.6
3,305,871	+			+0.5
3,305,872	-			+1.8
3,305,883	+	DZA65_RS15220	0.11	+1.0
3,305,883	+	DZA65_RS15220	0.11	-1.8
3,305,884	-	DZA65_RS15220	0.12	+2.0
3,305,893	+	DZA65_RS15220	0.13	+0.7
3,305,956	+	DZA65_RS15220	0.23	-0.3
3,305,956	+	DZA65_RS15220	0.23	+0.8
3,305,956	+	DZA65_RS15220	0.23	+1.0
3,305,960	+	DZA65_RS15220	0.23	-0.0
3,305,960	+	DZA65_RS15220	0.23	+0.1
3,305,960	+	DZA65_RS15220	0.23	+0.2
3,305,960	+	DZA65_RS15220	0.23	-0.3
3,305,961	-	DZA65_RS15220	0.24	-1.6
3,305,961	-	DZA65_RS15220	0.24	-2.2
3,306,097	+	DZA65_RS15220	0.45	+0.6
3,306,156	+	DZA65_RS15220	0.54	-0.3
3,306,168	+	DZA65_RS15220	0.56	+0.6
3,306,168	+	DZA65_RS15220	0.56	+0.3
3,306,168	+	DZA65_RS15220	0.56	-0.7
3,306,168	+	DZA65_RS15220	0.56	+0.3
3,306,169	-	DZA65_RS15220	0.56	+0.9
3,306,174	+	DZA65_RS15220	0.57	+2.0
3,306,174	+	DZA65_RS15220	0.57	+0.6
3,306,174	+	DZA65_RS15220	0.57	+0.3
3,306,175	-	DZA65_RS15220	0.57	-2.2
3,306,175	-	DZA65_RS15220	0.57	+0.6
3,306,217	-	DZA65_RS15220	0.64	-0.2
3,306,217	-	DZA65_RS15220	0.64	+0.1
3,306,271	+	DZA65_RS15220	0.72	-0.4
3,306,271	+	DZA65_RS15220	0.72	+0.8
3,306,272	-	DZA65_RS15220	0.72	+0.5
3,306,355	+	DZA65_RS15220	0.85	-0.8
3,306,378	-	DZA65_RS15220	0.89	-0.0
3,306,433	+			+0.4
3,306,433	+			-0.1
3,306,434	-			-0.1
3,306,436	+			+1.0
3,306,436	+			-0.0
3,306,437	-			+0.2
3,306,437	-			+0.4
3,306,461	+	DZA65_RS15225	0.12	-1.2
3,306,470	+	DZA65_RS15225	0.16	+0.3
3,306,483	+	DZA65_RS15225	0.23	-0.2
3,306,483	+	DZA65_RS15225	0.23	-0.6
3,306,551	+	DZA65_RS15225	0.57	+1.2
3,306,551	+	DZA65_RS15225	0.57	+0.4
3,306,551	+	DZA65_RS15225	0.57	+1.1
3,306,551	+	DZA65_RS15225	0.57	-2.6
3,306,551	+	DZA65_RS15225	0.57	-0.6
3,306,611	+	DZA65_RS15225	0.87	+0.6
3,306,611	+	DZA65_RS15225	0.87	-0.1
3,306,614	+	DZA65_RS15225	0.89	+0.6
3,306,614	+	DZA65_RS15225	0.89	+1.4
3,306,624	+			-0.9
3,306,624	+			+0.7
3,306,629	+			+0.2
3,306,629	+			-1.6
3,306,654	+			-0.6
3,306,697	+	DZA65_RS15230	0.23	+0.2

Or see this region's nucleotide sequence