Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14865

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS14860 and DZA65_RS14865 overlap by 14 nucleotidesDZA65_RS14865 and DZA65_RS14870 are separated by 2 nucleotides DZA65_RS14860: DZA65_RS14860 - hydrogenase formation protein HypD, at 3,240,272 to 3,241,387 _RS14860 DZA65_RS14865: DZA65_RS14865 - hydrogenase maturation factor HybG, at 3,241,374 to 3,241,661 _RS14865 DZA65_RS14870: DZA65_RS14870 - hydrogenase nickel incorporation protein HypB, at 3,241,664 to 3,242,791 _RS14870 Position (kb) 3241 3242Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3240.395 kb on - strand, within DZA65_RS14860at 3240.395 kb on - strand, within DZA65_RS14860at 3240.410 kb on + strand, within DZA65_RS14860at 3240.463 kb on + strand, within DZA65_RS14860at 3240.492 kb on + strand, within DZA65_RS14860at 3240.492 kb on + strand, within DZA65_RS14860at 3240.619 kb on + strand, within DZA65_RS14860at 3240.620 kb on - strand, within DZA65_RS14860at 3241.021 kb on - strand, within DZA65_RS14860at 3241.090 kb on + strand, within DZA65_RS14860at 3241.090 kb on + strand, within DZA65_RS14860at 3241.091 kb on - strand, within DZA65_RS14860at 3241.105 kb on + strand, within DZA65_RS14860at 3241.309 kb on + strandat 3241.310 kb on - strandat 3241.310 kb on - strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.380 kb on + strandat 3241.381 kb on - strandat 3241.381 kb on - strandat 3241.381 kb on - strandat 3241.381 kb on - strandat 3241.381 kb on - strandat 3241.381 kb on - strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.387 kb on + strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.388 kb on - strandat 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.509 kb on + strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.510 kb on - strand, within DZA65_RS14865at 3241.565 kb on + strand, within DZA65_RS14865at 3241.609 kb on + strand, within DZA65_RS14865at 3241.665 kb on + strandat 3241.665 kb on + strandat 3241.666 kb on - strandat 3241.676 kb on + strandat 3241.677 kb on - strandat 3241.755 kb on - strandat 3241.755 kb on - strandat 3241.835 kb on + strand, within DZA65_RS14870at 3241.835 kb on + strand, within DZA65_RS14870at 3241.836 kb on - strand, within DZA65_RS14870at 3241.836 kb on - strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.903 kb on + strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strandat 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strandat 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.904 kb on - strand, within DZA65_RS14870at 3241.911 kb on + strand, within DZA65_RS14870at 3241.911 kb on + strand, within DZA65_RS14870at 3241.912 kb on - strand, within DZA65_RS14870at 3241.912 kb on - strand, within DZA65_RS14870at 3242.216 kb on - strand, within DZA65_RS14870at 3242.225 kb on + strand, within DZA65_RS14870at 3242.225 kb on + strand, within DZA65_RS14870at 3242.225 kb on + strand, within DZA65_RS14870at 3242.226 kb on - strand, within DZA65_RS14870at 3242.226 kb on - strand, within DZA65_RS14870at 3242.345 kb on + strand, within DZA65_RS14870at 3242.346 kb on - strand, within DZA65_RS14870at 3242.346 kb on - strand, within DZA65_RS14870at 3242.346 kb on - strand, within DZA65_RS14870at 3242.407 kb on - strand, within DZA65_RS14870at 3242.571 kb on + strand, within DZA65_RS14870at 3242.598 kb on + strand, within DZA65_RS14870at 3242.598 kb on + strand, within DZA65_RS14870at 3242.598 kb on + strand, within DZA65_RS14870at 3242.599 kb on - strand, within DZA65_RS14870at 3242.599 kb on - strand, within DZA65_RS14870at 3242.599 kb on - strand, within DZA65_RS14870at 3242.599 kb on - strandat 3242.599 kb on - strand, within DZA65_RS14870at 3242.601 kb on + strand, within DZA65_RS14870at 3242.601 kb on + strand, within DZA65_RS14870at 3242.601 kb on + strand, within DZA65_RS14870at 3242.601 kb on + strand, within DZA65_RS14870at 3242.601 kb on + strand, within DZA65_RS14870at 3242.601 kb on + strand, within DZA65_RS14870at 3242.601 kb on + strand, within DZA65_RS14870at 3242.601 kb on + strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strandat 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.602 kb on - strand, within DZA65_RS14870at 3242.604 kb on + strand, within DZA65_RS14870at 3242.604 kb on + strand, within DZA65_RS14870at 3242.604 kb on + strand, within DZA65_RS14870at 3242.604 kb on + strand, within DZA65_RS14870at 3242.605 kb on - strand, within DZA65_RS14870at 3242.605 kb on - strand, within DZA65_RS14870at 3242.642 kb on + strand, within DZA65_RS14870at 3242.643 kb on - strand, within DZA65_RS14870at 3242.643 kb on - strand, within DZA65_RS14870

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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3,240,395 - DZA65_RS14860 0.11 -2.1
3,240,395 - DZA65_RS14860 0.11 -0.1
3,240,410 + DZA65_RS14860 0.12 -0.5
3,240,463 + DZA65_RS14860 0.17 -0.2
3,240,492 + DZA65_RS14860 0.20 -2.1
3,240,492 + DZA65_RS14860 0.20 +0.3
3,240,619 + DZA65_RS14860 0.31 +1.5
3,240,620 - DZA65_RS14860 0.31 -0.5
3,241,021 - DZA65_RS14860 0.67 -0.5
3,241,090 + DZA65_RS14860 0.73 +0.1
3,241,090 + DZA65_RS14860 0.73 -0.3
3,241,091 - DZA65_RS14860 0.73 +0.9
3,241,105 + DZA65_RS14860 0.75 +0.3
3,241,309 + -0.9
3,241,310 - -0.2
3,241,310 - +0.1
3,241,380 + -2.8
3,241,380 + +0.6
3,241,380 + -0.6
3,241,380 + +0.8
3,241,380 + +0.3
3,241,380 + +0.9
3,241,380 + +0.5
3,241,381 - -1.0
3,241,381 - +0.0
3,241,381 - -1.0
3,241,381 - +1.5
3,241,381 - -2.5
3,241,381 - -0.1
3,241,387 + -0.5
3,241,387 + +0.3
3,241,387 + +0.0
3,241,387 + -1.1
3,241,387 + -1.5
3,241,387 + +0.9
3,241,387 + +0.3
3,241,388 - +0.8
3,241,388 - -1.7
3,241,388 - +0.2
3,241,388 - +1.8
3,241,388 - -0.1
3,241,388 - -0.7
3,241,388 - -2.7
3,241,388 - +0.3
3,241,388 - -2.8
3,241,388 - -0.5
3,241,388 - +0.1
3,241,509 + DZA65_RS14865 0.47 -0.3
3,241,509 + DZA65_RS14865 0.47 +0.1
3,241,509 + DZA65_RS14865 0.47 -0.2
3,241,509 + DZA65_RS14865 0.47 -2.2
3,241,509 + DZA65_RS14865 0.47 +0.3
3,241,509 + DZA65_RS14865 0.47 -0.8
3,241,509 + DZA65_RS14865 0.47 +0.8
3,241,509 + DZA65_RS14865 0.47 -1.1
3,241,509 + DZA65_RS14865 0.47 +0.1
3,241,509 + DZA65_RS14865 0.47 -1.5
3,241,509 + DZA65_RS14865 0.47 -1.0
3,241,509 + DZA65_RS14865 0.47 -1.2
3,241,509 + DZA65_RS14865 0.47 -1.0
3,241,509 + DZA65_RS14865 0.47 +0.1
3,241,509 + DZA65_RS14865 0.47 -0.7
3,241,510 - DZA65_RS14865 0.47 -1.5
3,241,510 - DZA65_RS14865 0.47 -0.7
3,241,510 - DZA65_RS14865 0.47 -0.0
3,241,510 - DZA65_RS14865 0.47 -0.9
3,241,510 - DZA65_RS14865 0.47 -1.5
3,241,510 - DZA65_RS14865 0.47 +1.5
3,241,510 - DZA65_RS14865 0.47 -1.2
3,241,565 + DZA65_RS14865 0.66 +0.5
3,241,609 + DZA65_RS14865 0.82 +1.0
3,241,665 + -0.4
3,241,665 + -0.1
3,241,666 - -1.0
3,241,676 + -0.7
3,241,677 - +0.3
3,241,755 - +0.1
3,241,755 - -0.8
3,241,835 + DZA65_RS14870 0.15 +1.4
3,241,835 + DZA65_RS14870 0.15 -0.2
3,241,836 - DZA65_RS14870 0.15 -1.5
3,241,836 - DZA65_RS14870 0.15 -1.0
3,241,903 + DZA65_RS14870 0.21 +1.1
3,241,903 + DZA65_RS14870 0.21 +1.1
3,241,903 + DZA65_RS14870 0.21 -0.5
3,241,903 + DZA65_RS14870 0.21 -1.0
3,241,903 + DZA65_RS14870 0.21 -0.7
3,241,903 + DZA65_RS14870 0.21 -2.2
3,241,903 + DZA65_RS14870 0.21 -1.2
3,241,903 + DZA65_RS14870 0.21 -0.2
3,241,903 + DZA65_RS14870 0.21 -0.5
3,241,903 + DZA65_RS14870 0.21 -1.2
3,241,903 + DZA65_RS14870 0.21 +1.0
3,241,903 + DZA65_RS14870 0.21 -1.1
3,241,903 + DZA65_RS14870 0.21 +0.1
3,241,903 + DZA65_RS14870 0.21 +0.6
3,241,903 + DZA65_RS14870 0.21 +0.0
3,241,903 + DZA65_RS14870 0.21 -0.4
3,241,903 + DZA65_RS14870 0.21 -1.4
3,241,903 + DZA65_RS14870 0.21 -1.2
3,241,903 + DZA65_RS14870 0.21 +0.7
3,241,903 + DZA65_RS14870 0.21 +0.2
3,241,903 + DZA65_RS14870 0.21 +0.9
3,241,904 - DZA65_RS14870 0.21 -0.9
3,241,904 - DZA65_RS14870 0.21 -2.0
3,241,904 - DZA65_RS14870 0.21 +0.3
3,241,904 - +1.9
3,241,904 - DZA65_RS14870 0.21 -0.3
3,241,904 - DZA65_RS14870 0.21 +0.8
3,241,904 - DZA65_RS14870 0.21 +0.8
3,241,904 - -1.2
3,241,904 - DZA65_RS14870 0.21 +0.7
3,241,904 - DZA65_RS14870 0.21 +0.1
3,241,904 - DZA65_RS14870 0.21 -1.4
3,241,904 - DZA65_RS14870 0.21 +0.3
3,241,904 - DZA65_RS14870 0.21 -2.0
3,241,904 - DZA65_RS14870 0.21 +0.5
3,241,904 - DZA65_RS14870 0.21 -1.1
3,241,904 - DZA65_RS14870 0.21 -0.1
3,241,904 - DZA65_RS14870 0.21 +0.1
3,241,904 - DZA65_RS14870 0.21 -0.8
3,241,904 - DZA65_RS14870 0.21 +0.3
3,241,904 - DZA65_RS14870 0.21 +1.3
3,241,911 + DZA65_RS14870 0.22 +3.1
3,241,911 + DZA65_RS14870 0.22 -0.6
3,241,912 - DZA65_RS14870 0.22 +0.6
3,241,912 - DZA65_RS14870 0.22 +0.1
3,242,216 - DZA65_RS14870 0.49 -0.5
3,242,225 + DZA65_RS14870 0.50 -1.5
3,242,225 + DZA65_RS14870 0.50 -1.3
3,242,225 + DZA65_RS14870 0.50 -2.1
3,242,226 - DZA65_RS14870 0.50 -2.5
3,242,226 - DZA65_RS14870 0.50 -3.0
3,242,345 + DZA65_RS14870 0.60 -0.5
3,242,346 - DZA65_RS14870 0.60 +0.5
3,242,346 - DZA65_RS14870 0.60 -0.7
3,242,346 - DZA65_RS14870 0.60 -0.1
3,242,407 - DZA65_RS14870 0.66 +1.7
3,242,571 + DZA65_RS14870 0.80 -0.4
3,242,598 + DZA65_RS14870 0.83 +1.1
3,242,598 + DZA65_RS14870 0.83 +0.3
3,242,598 + DZA65_RS14870 0.83 +1.9
3,242,599 - DZA65_RS14870 0.83 +1.8
3,242,599 - DZA65_RS14870 0.83 +0.8
3,242,599 - DZA65_RS14870 0.83 -1.2
3,242,599 - +0.3
3,242,599 - DZA65_RS14870 0.83 -0.1
3,242,601 + DZA65_RS14870 0.83 -0.2
3,242,601 + DZA65_RS14870 0.83 +0.7
3,242,601 + DZA65_RS14870 0.83 -0.1
3,242,601 + DZA65_RS14870 0.83 +0.2
3,242,601 + DZA65_RS14870 0.83 +1.0
3,242,601 + DZA65_RS14870 0.83 -0.9
3,242,601 + DZA65_RS14870 0.83 +1.7
3,242,601 + DZA65_RS14870 0.83 -1.6
3,242,602 - DZA65_RS14870 0.83 -0.1
3,242,602 - DZA65_RS14870 0.83 +0.8
3,242,602 - DZA65_RS14870 0.83 +1.5
3,242,602 - DZA65_RS14870 0.83 -0.4
3,242,602 - DZA65_RS14870 0.83 -0.7
3,242,602 - DZA65_RS14870 0.83 +0.8
3,242,602 - DZA65_RS14870 0.83 -1.2
3,242,602 - DZA65_RS14870 0.83 +2.1
3,242,602 - DZA65_RS14870 0.83 +1.3
3,242,602 - DZA65_RS14870 0.83 -0.3
3,242,602 - +1.9
3,242,602 - DZA65_RS14870 0.83 +0.7
3,242,602 - DZA65_RS14870 0.83 +0.0
3,242,602 - DZA65_RS14870 0.83 -1.2
3,242,604 + DZA65_RS14870 0.83 +0.8
3,242,604 + DZA65_RS14870 0.83 -0.2
3,242,604 + DZA65_RS14870 0.83 +0.1
3,242,604 + DZA65_RS14870 0.83 -0.4
3,242,605 - DZA65_RS14870 0.83 -1.2
3,242,605 - DZA65_RS14870 0.83 +0.8
3,242,642 + DZA65_RS14870 0.87 -1.8
3,242,643 - DZA65_RS14870 0.87 -0.5
3,242,643 - DZA65_RS14870 0.87 -0.7

Or see this region's nucleotide sequence