Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14390

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,139,079	+		DZA65_RS14385	0.65	+1.0
3,139,080	-		DZA65_RS14385	0.65	-0.5
3,139,135	+		DZA65_RS14385	0.67	-1.1
3,139,136	-		DZA65_RS14385	0.67	-1.7
3,139,147	+		DZA65_RS14385	0.68	+0.3
3,139,148	-		DZA65_RS14385	0.68	+0.5
3,139,148	-		DZA65_RS14385	0.68	+0.5
3,139,156	+		DZA65_RS14385	0.68	+0.1
3,139,156	+		DZA65_RS14385	0.68	+0.9
3,139,225	+		DZA65_RS14385	0.70	-0.5
3,139,225	+		DZA65_RS14385	0.70	-0.2
3,139,225	+		DZA65_RS14385	0.70	-0.7
3,139,272	-		DZA65_RS14385	0.72	+0.7
3,139,280	+		DZA65_RS14385	0.72	-0.7
3,139,285	+		DZA65_RS14385	0.73	-1.3
3,139,285	+		DZA65_RS14385	0.73	+0.5
3,139,285	+		DZA65_RS14385	0.73	+0.7
3,139,285	+		DZA65_RS14385	0.73	-0.7
3,139,285	+		DZA65_RS14385	0.73	+1.1
3,139,285	+		DZA65_RS14385	0.73	-0.1
3,139,285	+				-0.5
3,139,286	-		DZA65_RS14385	0.73	+0.4
3,139,286	-		DZA65_RS14385	0.73	-0.4
3,139,286	-		DZA65_RS14385	0.73	-0.9
3,139,286	-		DZA65_RS14385	0.73	+0.5
3,139,286	-		DZA65_RS14385	0.73	+0.6
3,139,288	+		DZA65_RS14385	0.73	-0.5
3,139,288	+		DZA65_RS14385	0.73	-2.1
3,139,340	-		DZA65_RS14385	0.75	-0.5
3,139,352	-		DZA65_RS14385	0.75	-0.2
3,139,353	+		DZA65_RS14385	0.75	+0.1
3,139,354	-		DZA65_RS14385	0.75	-1.3
3,139,354	-		DZA65_RS14385	0.75	-1.9
3,139,438	+		DZA65_RS14385	0.78	-0.5
3,139,482	+		DZA65_RS14385	0.80	-1.5
3,139,502	+		DZA65_RS14385	0.81	+0.6
3,139,502	+		DZA65_RS14385	0.81	+0.5
3,139,555	+		DZA65_RS14385	0.82	-0.4
3,139,555	+		DZA65_RS14385	0.82	-2.1
3,139,555	+		DZA65_RS14385	0.82	-0.2
3,139,556	-		DZA65_RS14385	0.83	+0.6
3,139,648	+		DZA65_RS14385	0.86	+0.2
3,139,705	+		DZA65_RS14385	0.88	-1.7
3,139,705	+		DZA65_RS14385	0.88	+0.2
3,139,763	+				+0.2
3,139,763	+				-0.3
3,139,797	-				-0.0
3,139,832	+				-0.4
3,139,832	+				-0.2
3,139,832	+				+0.8
3,139,832	+				+0.3
3,139,832	+				-0.8
3,139,832	+				-1.3
3,139,832	+				+0.0
3,139,832	+				-0.3
3,139,832	+				+0.3
3,139,833	-				-1.1
3,139,833	-				+0.9
3,139,833	-				+2.1
3,139,833	-				-0.5
3,139,833	-				-2.1
3,139,833	-				+0.5
3,139,833	-				-0.7
3,139,833	-				-1.3
3,139,833	-				+0.8
3,139,833	-				-1.1
3,139,833	-				+1.5
3,139,833	-				-0.5
3,139,833	-				-0.1
3,139,834	+				+0.9
3,139,834	+				-0.5
3,139,834	+				-0.5
3,139,835	-				-1.2
3,139,835	-				+1.5
3,139,835	-				-0.7
3,139,835	-				+0.3
3,139,835	-				-0.5
3,139,835	-				+0.7
3,139,976	+				-1.5
3,139,977	-				+1.1
3,139,977	-				-0.4
3,140,036	+				+0.3
3,140,077	+				+1.7
3,140,078	-				+0.1
3,140,078	-				-0.5
3,140,149	-		DZA65_RS14390	0.13	-0.7
3,140,212	+		DZA65_RS14390	0.21	+0.5
3,140,212	+		DZA65_RS14390	0.21	+0.6
3,140,214	+		DZA65_RS14390	0.22	+0.6
3,140,215	-		DZA65_RS14390	0.22	+0.6
3,140,233	+		DZA65_RS14390	0.24	+0.1
3,140,233	+		DZA65_RS14390	0.24	-0.0
3,140,233	+		DZA65_RS14390	0.24	+1.4
3,140,234	-		DZA65_RS14390	0.24	+0.6
3,140,234	-		DZA65_RS14390	0.24	+2.3
3,140,234	-		DZA65_RS14390	0.24	-0.6
3,140,235	+		DZA65_RS14390	0.25	+1.1
3,140,235	+		DZA65_RS14390	0.25	-0.7
3,140,377	+		DZA65_RS14390	0.44	+0.6
3,140,399	+		DZA65_RS14390	0.47	-0.0
3,140,399	+		DZA65_RS14390	0.47	-2.1
3,140,399	+		DZA65_RS14390	0.47	-0.3
3,140,400	-		DZA65_RS14390	0.48	-1.0
3,140,400	-		DZA65_RS14390	0.48	-1.3
3,140,401	+		DZA65_RS14390	0.48	-2.7
3,140,431	-		DZA65_RS14390	0.52	-0.9
3,140,532	+		DZA65_RS14390	0.66	-0.5
3,140,536	-		DZA65_RS14390	0.67	+0.3
3,140,543	+		DZA65_RS14390	0.68	-0.2
3,140,544	-		DZA65_RS14390	0.68	+1.6
3,140,552	+		DZA65_RS14390	0.69	+0.6
3,140,552	+		DZA65_RS14390	0.69	-1.1
3,140,552	+				+1.8
3,140,552	+		DZA65_RS14390	0.69	+0.8
3,140,553	-		DZA65_RS14390	0.69	-2.0
3,140,553	-		DZA65_RS14390	0.69	+1.1
3,140,573	+		DZA65_RS14390	0.72	+0.0
3,140,574	-		DZA65_RS14390	0.72	+0.4
3,140,766	+				+1.3
3,140,820	+		DZA65_RS14395	0.15	-0.3
3,140,829	+		DZA65_RS14395	0.19	+0.5
3,140,906	-		DZA65_RS14395	0.53	+0.7
3,140,906	-		DZA65_RS14395	0.53	-0.2
3,141,009	-				+0.1
3,141,022	-				-1.1
3,141,022	-				+0.3
3,141,022	-				+0.5
3,141,022	-				-1.9
3,141,022	-				+1.3
3,141,022	-				-1.7
3,141,033	+				-2.4
3,141,033	+				-2.5
3,141,033	+				-0.3
3,141,033	+				-1.5
3,141,034	-				-0.4
3,141,071	+				+0.6
3,141,071	+				-0.0
3,141,071	+				+1.5
3,141,072	-				+1.5
3,141,072	-				+0.7
3,141,072	-				-1.1
3,141,116	+				-0.3
3,141,116	+				-0.3
3,141,116	+				-0.2
3,141,116	+				+1.3
3,141,116	+				-0.3
3,141,117	-				-0.1
3,141,117	-				+0.8
3,141,117	-				-1.7
3,141,117	-				-1.3
3,141,117	-				-1.0
3,141,146	+		DZA65_RS14400	0.12	+0.1
3,141,147	-		DZA65_RS14400	0.12	-0.8
3,141,147	-		DZA65_RS14400	0.12	+0.5
3,141,158	-		DZA65_RS14400	0.13	-0.3
3,141,158	-		DZA65_RS14400	0.13	-1.5
3,141,200	+		DZA65_RS14400	0.17	-0.2
3,141,201	-		DZA65_RS14400	0.17	-1.2
3,141,212	+		DZA65_RS14400	0.18	+0.5
3,141,212	+		DZA65_RS14400	0.18	+0.0
3,141,212	+		DZA65_RS14400	0.18	-0.1
3,141,234	-		DZA65_RS14400	0.20	+0.7
3,141,234	-		DZA65_RS14400	0.20	+0.3
3,141,234	-		DZA65_RS14400	0.20	+0.3
3,141,237	-		DZA65_RS14400	0.21	-1.2
3,141,237	-		DZA65_RS14400	0.21	-0.1
3,141,237	-		DZA65_RS14400	0.21	-0.6
3,141,278	+		DZA65_RS14400	0.25	+0.5
3,141,279	-		DZA65_RS14400	0.25	-0.7
3,141,295	-		DZA65_RS14400	0.26	+0.7
3,141,302	+		DZA65_RS14400	0.27	-0.8
3,141,303	-		DZA65_RS14400	0.27	-0.3
3,141,303	-		DZA65_RS14400	0.27	-0.3
3,141,374	+		DZA65_RS14400	0.34	+0.1
3,141,389	-		DZA65_RS14400	0.35	-0.3
3,141,409	+		DZA65_RS14400	0.37	-1.0
3,141,409	+		DZA65_RS14400	0.37	-0.9
3,141,409	+		DZA65_RS14400	0.37	-1.1
3,141,410	-		DZA65_RS14400	0.37	+2.1
3,141,410	-		DZA65_RS14400	0.37	+0.2
3,141,410	-		DZA65_RS14400	0.37	+0.5
3,141,413	+		DZA65_RS14400	0.38	-1.7
3,141,413	+		DZA65_RS14400	0.38	+0.7
3,141,414	-		DZA65_RS14400	0.38	-1.9
3,141,414	-		DZA65_RS14400	0.38	+0.3
3,141,508	-		DZA65_RS14400	0.47	+0.7
3,141,516	-		DZA65_RS14400	0.47	-0.2
3,141,516	-		DZA65_RS14400	0.47	-0.3
3,141,543	+		DZA65_RS14400	0.50	-0.0
3,141,544	-		DZA65_RS14400	0.50	+0.8
3,141,560	-		DZA65_RS14400	0.52	+0.7
3,141,624	+		DZA65_RS14400	0.58	+1.3
3,141,661	+		DZA65_RS14400	0.61	-0.6
3,141,677	+		DZA65_RS14400	0.63	+1.5
3,141,677	+		DZA65_RS14400	0.63	-0.5
3,141,681	+		DZA65_RS14400	0.63	+0.3
3,141,681	+		DZA65_RS14400	0.63	-1.5
3,141,751	-		DZA65_RS14400	0.70	-0.7
3,141,765	+		DZA65_RS14400	0.71	-1.5
3,141,766	-		DZA65_RS14400	0.71	-1.2
3,141,766	-		DZA65_RS14400	0.71	+0.3