Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11840

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,524,577	-		DZA65_RS11835	0.41	-0.2
2,524,577	-		DZA65_RS11835	0.41	+1.1
2,524,582	+		DZA65_RS11835	0.42	-0.5
2,524,583	-		DZA65_RS11835	0.42	+0.0
2,524,583	-		DZA65_RS11835	0.42	-0.1
2,524,583	-		DZA65_RS11835	0.42	-0.3
2,524,583	-		DZA65_RS11835	0.42	-1.7
2,524,583	-		DZA65_RS11835	0.42	-0.3
2,524,583	-		DZA65_RS11835	0.42	+0.1
2,524,612	+		DZA65_RS11835	0.44	-0.9
2,524,612	+				+2.1
2,524,612	+		DZA65_RS11835	0.44	-0.9
2,524,613	-		DZA65_RS11835	0.44	+0.7
2,524,613	-		DZA65_RS11835	0.44	-2.7
2,524,655	+		DZA65_RS11835	0.48	-1.4
2,524,660	+		DZA65_RS11835	0.48	+1.5
2,524,660	+		DZA65_RS11835	0.48	+0.4
2,524,660	+		DZA65_RS11835	0.48	-1.9
2,524,660	+		DZA65_RS11835	0.48	-1.2
2,524,660	+		DZA65_RS11835	0.48	-1.7
2,524,661	-		DZA65_RS11835	0.48	-1.4
2,524,684	+		DZA65_RS11835	0.50	-0.4
2,524,684	+		DZA65_RS11835	0.50	-0.4
2,524,684	+		DZA65_RS11835	0.50	+0.1
2,524,684	+		DZA65_RS11835	0.50	-0.0
2,524,684	+		DZA65_RS11835	0.50	-0.4
2,524,685	-		DZA65_RS11835	0.50	-0.4
2,524,685	-		DZA65_RS11835	0.50	+0.1
2,524,717	+		DZA65_RS11835	0.53	+0.5
2,524,717	+		DZA65_RS11835	0.53	+0.6
2,524,717	+				-1.4
2,524,718	-		DZA65_RS11835	0.53	+0.1
2,524,775	-		DZA65_RS11835	0.58	+0.7
2,524,775	-		DZA65_RS11835	0.58	-0.8
2,524,779	+				+0.1
2,524,780	-		DZA65_RS11835	0.59	-1.2
2,524,780	-		DZA65_RS11835	0.59	+0.7
2,524,780	-		DZA65_RS11835	0.59	+0.0
2,524,780	-		DZA65_RS11835	0.59	+1.9
2,524,879	+		DZA65_RS11835	0.67	-1.2
2,524,880	-		DZA65_RS11835	0.67	+0.3
2,524,885	-		DZA65_RS11835	0.68	+0.6
2,524,911	+		DZA65_RS11835	0.70	+0.3
2,524,911	+		DZA65_RS11835	0.70	+0.9
2,524,911	+		DZA65_RS11835	0.70	-0.2
2,524,916	-		DZA65_RS11835	0.70	+0.1
2,524,916	-		DZA65_RS11835	0.70	-0.9
2,524,916	-		DZA65_RS11835	0.70	-0.2
2,524,933	+		DZA65_RS11835	0.72	+0.3
2,524,933	+		DZA65_RS11835	0.72	+0.1
2,524,934	-		DZA65_RS11835	0.72	-3.2
2,524,934	-		DZA65_RS11835	0.72	+2.7
2,524,934	-		DZA65_RS11835	0.72	+0.1
2,524,957	+		DZA65_RS11835	0.74	-0.6
2,524,974	+		DZA65_RS11835	0.75	-0.5
2,524,974	+		DZA65_RS11835	0.75	-0.7
2,524,974	+		DZA65_RS11835	0.75	+0.1
2,524,974	+		DZA65_RS11835	0.75	+0.1
2,524,975	-		DZA65_RS11835	0.75	+1.7
2,524,977	+		DZA65_RS11835	0.75	+1.3
2,524,978	-		DZA65_RS11835	0.75	+0.1
2,525,018	-		DZA65_RS11835	0.79	+1.1
2,525,018	-		DZA65_RS11835	0.79	-0.9
2,525,018	-		DZA65_RS11835	0.79	-0.4
2,525,018	-		DZA65_RS11835	0.79	+0.6
2,525,076	+		DZA65_RS11835	0.84	-1.5
2,525,077	-		DZA65_RS11835	0.84	-0.1
2,525,079	+		DZA65_RS11835	0.84	+0.7
2,525,080	-		DZA65_RS11835	0.84	+1.7
2,525,080	-		DZA65_RS11835	0.84	-0.4
2,525,148	+				-0.6
2,525,154	+				-1.6
2,525,155	-				-1.2
2,525,171	-				-2.7
2,525,171	-				-1.9
2,525,171	-				-0.7
2,525,223	+				-0.6
2,525,223	+				-1.4
2,525,223	+				-0.3
2,525,224	-				-1.9
2,525,227	+				-0.9
2,525,228	-				-0.7
2,525,252	-				+3.1
2,525,317	+				+0.1
2,525,318	-				-1.3
2,525,318	-				+0.1
2,525,318	-				+0.4
2,525,321	+				-0.5
2,525,321	+				-0.9
2,525,321	+				+1.1
2,525,321	+				+0.7
2,525,322	-				+0.1
2,525,322	-				-1.0
2,525,322	-				+0.5
2,525,322	-				-1.2
2,525,348	-				+0.5
2,525,348	-				+0.1
2,525,359	-				-0.1
2,525,359	-				-0.9
2,525,448	+				+0.1
2,525,448	+				+1.7
2,525,449	-				-0.9
2,525,449	-				+1.7
2,525,553	-				-0.3
2,525,562	-				+0.1
2,525,562	-				-0.1
2,525,587	-				+0.1
2,525,587	-				+0.5
2,525,640	+		DZA65_RS11840	0.10	-0.2
2,525,640	+		DZA65_RS11840	0.10	+0.4
2,525,640	+		DZA65_RS11840	0.10	-1.4
2,525,641	-		DZA65_RS11840	0.10	-0.4
2,525,664	+		DZA65_RS11840	0.13	-0.0
2,525,665	-		DZA65_RS11840	0.13	+0.1
2,525,665	-		DZA65_RS11840	0.13	+0.7
2,525,665	-		DZA65_RS11840	0.13	+0.6
2,525,688	-		DZA65_RS11840	0.15	+0.3
2,525,831	-		DZA65_RS11840	0.32	+0.5
2,525,835	+		DZA65_RS11840	0.32	-1.9
2,525,836	-		DZA65_RS11840	0.32	-1.4
2,525,849	+		DZA65_RS11840	0.34	+1.5
2,525,850	-		DZA65_RS11840	0.34	-1.2
2,525,850	-		DZA65_RS11840	0.34	+1.1
2,525,940	+		DZA65_RS11840	0.44	+0.0
2,525,940	+		DZA65_RS11840	0.44	-0.2
2,525,941	-		DZA65_RS11840	0.44	-1.2
2,525,947	+		DZA65_RS11840	0.45	-1.1
2,526,064	+		DZA65_RS11840	0.58	+1.8
2,526,123	+		DZA65_RS11840	0.65	-1.9
2,526,124	-		DZA65_RS11840	0.65	-3.3
2,526,124	-		DZA65_RS11840	0.65	-0.9
2,526,140	+		DZA65_RS11840	0.67	-0.4
2,526,140	+		DZA65_RS11840	0.67	+0.1
2,526,140	+		DZA65_RS11840	0.67	-1.0
2,526,140	+		DZA65_RS11840	0.67	-0.8
2,526,140	+		DZA65_RS11840	0.67	-0.3
2,526,140	+		DZA65_RS11840	0.67	-0.3
2,526,141	-		DZA65_RS11840	0.67	+1.5
2,526,141	-		DZA65_RS11840	0.67	-0.9
2,526,141	-		DZA65_RS11840	0.67	+0.3
2,526,141	-		DZA65_RS11840	0.67	-0.5
2,526,141	-		DZA65_RS11840	0.67	-1.6
2,526,144	+		DZA65_RS11840	0.67	-0.1
2,526,144	+		DZA65_RS11840	0.67	-1.8
2,526,145	-		DZA65_RS11840	0.67	-0.2
2,526,159	+				+0.1
2,526,160	-		DZA65_RS11840	0.69	+0.6
2,526,273	+		DZA65_RS11840	0.82	-1.4
2,526,273	+		DZA65_RS11840	0.82	-1.4
2,526,274	-		DZA65_RS11840	0.82	+1.6
2,526,274	-		DZA65_RS11840	0.82	-1.1
2,526,274	-		DZA65_RS11840	0.82	-0.4
2,526,291	+		DZA65_RS11840	0.84	-2.4
2,526,291	+		DZA65_RS11840	0.84	-1.8
2,526,292	-		DZA65_RS11840	0.84	-1.1
2,526,292	-		DZA65_RS11840	0.84	+0.9
2,526,313	+		DZA65_RS11840	0.86	-1.4
2,526,314	-		DZA65_RS11840	0.86	-0.0
2,526,328	-		DZA65_RS11840	0.88	+1.5
2,526,369	+				+0.4
2,526,370	-				+1.6
2,526,370	-				-0.2
2,526,426	+				+0.1
2,526,427	-				-0.1
2,526,435	+				+0.4
2,526,435	+				+0.1
2,526,435	+				+0.1
2,526,435	+				-2.9
2,526,436	-				-0.2
2,526,436	-				+0.3
2,526,436	-				-0.7
2,526,436	-				+0.4
2,526,436	-				+0.1
2,526,436	-				-0.4
2,526,436	-				+1.0
2,526,436	-				+0.7
2,526,436	-				-0.1
2,526,436	-				+0.1
2,526,525	+				+0.3
2,526,532	+				+0.2
2,526,533	-				+0.4
2,526,533	-				-1.9
2,526,545	+				+3.1
2,526,546	-				+1.1
2,526,556	+				+0.1
2,526,598	+				-0.1
2,526,598	+				+0.8
2,526,598	+				+1.0
2,526,598	+				-3.4
2,526,598	+				-0.9
2,526,599	-				+0.5
2,526,599	-				+1.7
2,526,599	-				-0.8
2,526,623	+				+0.6
2,526,657	+				-0.5
2,526,657	+				+0.7
2,526,657	+				+0.1
2,526,658	-				+1.1
2,526,658	-				+0.1
2,526,686	+				-0.5
2,526,687	-				+0.1
2,526,704	+				-0.1
2,526,705	-				-1.2
2,526,705	-				+1.1
2,526,705	-				-2.4
2,526,707	+				-0.3
2,526,708	-				+0.4
2,526,712	+				-2.9
2,526,713	-				-0.2
2,526,713	-				+0.9
2,526,730	+				-1.3
2,526,731	-				-2.9
2,526,834	-				-0.7
2,526,842	+				+0.1
2,526,842	+				-0.4
2,526,843	-				+0.8
2,526,843	-				+0.1
2,526,843	-				+0.8
2,526,843	-				+0.0
2,526,843	-				+0.4
2,526,843	-				-0.2
2,526,843	-				+1.5
2,526,843	-				-0.7
2,526,854	+				+1.1
2,526,854	+				+0.6
2,526,854	+				-1.3
2,526,854	+				+0.0
2,526,854	+				-0.7
2,526,854	+				+0.2
2,526,854	+				+0.8
2,526,854	+				-1.4
2,526,854	+				+1.3
2,526,854	+				+0.3
2,526,854	+				-0.9
2,526,854	+				+1.2
2,526,854	+				+2.7
2,526,854	+				+0.4
2,526,854	+				-0.7
2,526,855	-				-1.4
2,526,855	-				-0.9
2,526,855	-				-2.4
2,526,855	-				+0.3
2,526,855	-				+0.1
2,526,855	-				-0.1
2,526,855	-				+0.3
2,526,855	-				+0.8
2,526,855	-				-0.3
2,526,855	-				-1.7
2,526,859	-				+0.7
2,526,859	-				-2.4
2,526,886	+				-1.4
2,526,886	+				+0.1
2,526,887	-				+2.7
2,526,887	-				-0.4
2,526,900	-				+3.0
2,526,977	+				+0.3
2,526,978	-				+0.2
2,527,079	+				-0.0
2,527,079	+				+0.8
2,527,079	+				-0.7
2,527,080	-				+0.6
2,527,080	-				+0.7
2,527,125	+		DZA65_RS11845	0.10	+1.8
2,527,125	+				+0.1
2,527,125	+		DZA65_RS11845	0.10	-0.6
2,527,125	+		DZA65_RS11845	0.10	+0.5
2,527,125	+		DZA65_RS11845	0.10	+0.5
2,527,125	+		DZA65_RS11845	0.10	+0.1
2,527,126	-		DZA65_RS11845	0.10	+0.9
2,527,126	-		DZA65_RS11845	0.10	-0.0
2,527,126	-		DZA65_RS11845	0.10	+0.8
2,527,126	-		DZA65_RS11845	0.10	-0.2
2,527,126	-		DZA65_RS11845	0.10	+1.6
2,527,152	+		DZA65_RS11845	0.12	-1.7
2,527,208	+		DZA65_RS11845	0.14	-0.1
2,527,239	+		DZA65_RS11845	0.16	-0.1
2,527,239	+		DZA65_RS11845	0.16	-0.9
2,527,240	-		DZA65_RS11845	0.16	+0.2
2,527,266	+		DZA65_RS11845	0.17	-0.4
2,527,266	+		DZA65_RS11845	0.17	+1.1
2,527,267	-		DZA65_RS11845	0.17	+0.5
2,527,267	-		DZA65_RS11845	0.17	-0.6
2,527,267	-		DZA65_RS11845	0.17	+0.3
2,527,285	+		DZA65_RS11845	0.18	+1.2