Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10185

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS10180 and DZA65_RS10185 overlap by 4 nucleotidesDZA65_RS10185 and DZA65_RS10190 are separated by 38 nucleotidesDZA65_RS10190 and DZA65_RS10195 overlap by 4 nucleotides DZA65_RS10180: DZA65_RS10180 - lipid A ABC transporter ATP-binding protein/permease MsbA, at 2,153,190 to 2,154,938 _RS10180 DZA65_RS10185: DZA65_RS10185 - tetraacyldisaccharide 4'-kinase, at 2,154,935 to 2,155,948 _RS10185 DZA65_RS10190: DZA65_RS10190 - hypothetical protein, at 2,155,987 to 2,156,169 _RS10190 DZA65_RS10195: DZA65_RS10195 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,156,166 to 2,156,918 _RS10195 Position (kb) 2154 2155 2156Strain fitness (log2 ratio) -1 0 1at 2156.929 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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2,156,929 + -1.4

Or see this region's nucleotide sequence