Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10100

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,138,366	+				+2.4
2,138,366	+				-0.3
2,138,367	-				-0.2
2,138,367	-				-0.2
2,138,367	-				-1.4
2,138,482	+		DZA65_RS10095	0.13	+0.2
2,138,482	+		DZA65_RS10095	0.13	+1.4
2,138,483	-		DZA65_RS10095	0.13	-1.8
2,138,610	+		DZA65_RS10095	0.27	-0.1
2,138,610	+		DZA65_RS10095	0.27	-0.1
2,138,610	+		DZA65_RS10095	0.27	-0.0
2,138,719	-		DZA65_RS10095	0.40	+0.2
2,138,736	+		DZA65_RS10095	0.42	-1.1
2,138,737	-		DZA65_RS10095	0.42	-0.1
2,138,826	+		DZA65_RS10095	0.52	-0.5
2,138,826	+		DZA65_RS10095	0.52	+0.2
2,138,826	+		DZA65_RS10095	0.52	+1.4
2,138,826	+		DZA65_RS10095	0.52	-0.8
2,138,827	-		DZA65_RS10095	0.52	+0.2
2,138,827	-		DZA65_RS10095	0.52	+0.4
2,138,827	-		DZA65_RS10095	0.52	+0.5
2,138,827	-		DZA65_RS10095	0.52	-0.3
2,138,827	-		DZA65_RS10095	0.52	+0.2
2,138,911	-				+0.6
2,138,960	+		DZA65_RS10095	0.67	-1.7
2,138,961	-		DZA65_RS10095	0.67	-1.4
2,138,961	-		DZA65_RS10095	0.67	-1.4
2,138,961	-		DZA65_RS10095	0.67	+0.9
2,138,961	-		DZA65_RS10095	0.67	-0.3
2,138,964	+		DZA65_RS10095	0.67	-1.2
2,138,965	-		DZA65_RS10095	0.68	+1.6
2,138,965	-		DZA65_RS10095	0.68	+0.3
2,139,036	+		DZA65_RS10095	0.76	-1.6
2,139,036	+		DZA65_RS10095	0.76	-0.3
2,139,036	+		DZA65_RS10095	0.76	-2.4
2,139,036	+				+0.8
2,139,036	+		DZA65_RS10095	0.76	-3.1
2,139,037	-		DZA65_RS10095	0.76	+0.9
2,139,037	-		DZA65_RS10095	0.76	-0.4
2,139,321	-				+0.2
2,139,321	-				-0.8
2,139,337	+				-0.7
2,139,357	+				+0.8
2,139,357	+				+0.3
2,139,357	+				-0.8
2,139,358	-				-0.1
2,139,358	-				-0.6
2,139,358	-				-0.1
2,139,374	+				+0.8
2,139,375	-				-0.3
2,139,375	-				-2.1
2,139,375	-				+0.1
2,139,375	-				+0.2
2,139,375	-				+0.2
2,139,442	+				+0.2
2,139,443	-				-0.4
2,139,451	+				-0.1
2,139,451	+				+0.1
2,139,452	-				+1.0
2,139,452	-				-0.2
2,139,495	-		DZA65_RS10100	0.14	-0.8
2,139,553	+		DZA65_RS10100	0.19	-0.4
2,139,554	-		DZA65_RS10100	0.19	+0.2
2,139,644	+		DZA65_RS10100	0.28	-1.0
2,139,649	-		DZA65_RS10100	0.28	-2.1
2,139,649	-		DZA65_RS10100	0.28	-0.5
2,139,709	-		DZA65_RS10100	0.34	-0.1
2,139,709	-		DZA65_RS10100	0.34	-0.9
2,139,759	+		DZA65_RS10100	0.39	-1.5
2,139,760	-		DZA65_RS10100	0.39	+0.1
2,139,760	-		DZA65_RS10100	0.39	-0.2
2,139,850	-		DZA65_RS10100	0.48	+0.2
2,139,890	+		DZA65_RS10100	0.51	-0.0
2,139,890	+		DZA65_RS10100	0.51	+0.2
2,140,002	+		DZA65_RS10100	0.62	-1.0
2,140,002	+		DZA65_RS10100	0.62	-0.8
2,140,002	+		DZA65_RS10100	0.62	+0.2
2,140,003	-		DZA65_RS10100	0.62	-0.8
2,140,003	-		DZA65_RS10100	0.62	+0.2
2,140,003	-		DZA65_RS10100	0.62	+0.2
2,140,003	-		DZA65_RS10100	0.62	+0.2
2,140,003	-		DZA65_RS10100	0.62	-1.4
2,140,003	-		DZA65_RS10100	0.62	-0.3
2,140,055	+		DZA65_RS10100	0.67	-0.1
2,140,102	-		DZA65_RS10100	0.72	+0.2
2,140,102	-		DZA65_RS10100	0.72	-0.8
2,140,173	+		DZA65_RS10100	0.78	-1.0
2,140,173	+				+1.2
2,140,173	+		DZA65_RS10100	0.78	-1.8
2,140,173	+		DZA65_RS10100	0.78	-0.3
2,140,173	+		DZA65_RS10100	0.78	-1.1
2,140,174	-		DZA65_RS10100	0.79	+0.5
2,140,174	-		DZA65_RS10100	0.79	-1.5
2,140,174	-		DZA65_RS10100	0.79	+1.3
2,140,175	+		DZA65_RS10100	0.79	-2.1
2,140,176	-		DZA65_RS10100	0.79	+0.8
2,140,366	+				-0.8
2,140,366	+				+1.4
2,140,366	+				-0.3
2,140,366	+				-1.4
2,140,366	+				-0.8
2,140,367	-				-1.4
2,140,374	+				-0.5
2,140,374	+				-0.4
2,140,407	-				+2.2
2,140,411	+				-0.8
2,140,411	+				+0.5
2,140,411	+				+1.0
2,140,411	+				-1.1
2,140,411	+				-1.1
2,140,411	+				-1.6
2,140,411	+				-0.1
2,140,411	+				+0.2
2,140,411	+				-1.8
2,140,411	+				-0.3
2,140,411	+				-0.9
2,140,411	+				+0.4
2,140,412	-				+0.9
2,140,412	-				+0.2
2,140,412	-				+0.8
2,140,412	-				+0.6
2,140,412	-				-0.8
2,140,412	-				-2.1
2,140,412	-				-0.0
2,140,412	-				-0.7
2,140,415	-				-0.2
2,140,415	-				+1.2
2,140,422	+				-0.8
2,140,422	+				+0.7
2,140,423	-				+0.6
2,140,423	-				-0.3
2,140,423	-				-2.1
2,140,438	+				+1.8
2,140,439	-				+1.6
2,140,560	+		DZA65_RS10105	0.45	-0.1
2,140,718	+				-0.8
2,140,718	+				-1.4
2,140,719	-				-0.6
2,140,719	-				+1.8
2,140,719	-				+0.6
2,140,719	-				-0.2
2,140,756	-				+0.2
2,140,756	-				+0.2
2,140,756	-				-0.0
2,140,756	-				-0.5
2,140,803	+				-1.2
2,140,804	-				+1.5
2,140,804	-				-0.2
2,140,808	-				+0.4
2,140,808	-				+0.2
2,140,867	-		DZA65_RS10110	0.16	-2.3
2,140,883	+		DZA65_RS10110	0.18	-0.1
2,140,883	+		DZA65_RS10110	0.18	-0.1
2,140,883	+		DZA65_RS10110	0.18	+0.0
2,140,883	+		DZA65_RS10110	0.18	-0.2
2,140,883	+		DZA65_RS10110	0.18	-2.6
2,140,884	-		DZA65_RS10110	0.18	-0.2
2,140,884	-		DZA65_RS10110	0.18	+0.5
2,140,886	-		DZA65_RS10110	0.19	+1.0
2,140,886	-		DZA65_RS10110	0.19	+0.3
2,140,886	-		DZA65_RS10110	0.19	-2.3
2,140,909	+		DZA65_RS10110	0.21	-1.0
2,140,909	+		DZA65_RS10110	0.21	+1.5
2,140,910	-				+1.6
2,140,910	-		DZA65_RS10110	0.21	-0.9
2,141,048	+		DZA65_RS10110	0.37	+0.5
2,141,049	-		DZA65_RS10110	0.37	+2.4
2,141,175	+		DZA65_RS10110	0.51	-0.2
2,141,175	+		DZA65_RS10110	0.51	-0.2
2,141,175	+		DZA65_RS10110	0.51	+0.5
2,141,176	-		DZA65_RS10110	0.51	-0.4
2,141,176	-		DZA65_RS10110	0.51	-0.4
2,141,176	-		DZA65_RS10110	0.51	+1.3
2,141,176	-		DZA65_RS10110	0.51	+0.3
2,141,176	-		DZA65_RS10110	0.51	+0.2
2,141,176	-		DZA65_RS10110	0.51	-0.4
2,141,176	-		DZA65_RS10110	0.51	-2.4
2,141,176	-		DZA65_RS10110	0.51	+0.7
2,141,176	-		DZA65_RS10110	0.51	-0.2
2,141,206	+		DZA65_RS10110	0.55	+0.2
2,141,206	+		DZA65_RS10110	0.55	+0.2
2,141,206	+		DZA65_RS10110	0.55	+0.8
2,141,206	+		DZA65_RS10110	0.55	+1.9
2,141,206	+		DZA65_RS10110	0.55	-1.1
2,141,207	-		DZA65_RS10110	0.55	-1.1
2,141,207	-		DZA65_RS10110	0.55	+1.2
2,141,254	+		DZA65_RS10110	0.60	-0.5
2,141,255	-		DZA65_RS10110	0.60	-0.3
2,141,255	-		DZA65_RS10110	0.60	+0.6
2,141,317	+		DZA65_RS10110	0.67	-0.8
2,141,317	+		DZA65_RS10110	0.67	-1.8
2,141,317	+		DZA65_RS10110	0.67	+0.4
2,141,317	+		DZA65_RS10110	0.67	-1.1
2,141,318	-		DZA65_RS10110	0.67	-1.1