Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01540 and DZA65_RS01545 are separated by 280 nucleotides DZA65_RS01545 and DZA65_RS01550 are separated by 3 nucleotides DZA65_RS01550 and DZA65_RS01555 are separated by 4 nucleotides
DZA65_RS01540: DZA65_RS01540 - calcium/sodium antiporter, at 336,450 to 337,412
_RS01540
DZA65_RS01545: DZA65_RS01545 - phospholipid ABC transporter ATP-binding protein MlaF, at 337,693 to 338,502
_RS01545
DZA65_RS01550: DZA65_RS01550 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 338,506 to 339,288
_RS01550
DZA65_RS01555: DZA65_RS01555 - outer membrane lipid asymmetry maintenance protein MlaD, at 339,293 to 339,907
_RS01555
Position (kb) 337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 336.720 kb on - strand, within DZA65_RS01540 at 336.797 kb on + strand, within DZA65_RS01540 at 336.798 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.805 kb on + strand, within DZA65_RS01540 at 336.806 kb on - strand at 336.806 kb on - strand, within DZA65_RS01540 at 336.806 kb on - strand, within DZA65_RS01540 at 336.806 kb on - strand at 336.806 kb on - strand, within DZA65_RS01540 at 336.861 kb on - strand, within DZA65_RS01540 at 336.861 kb on - strand, within DZA65_RS01540 at 336.861 kb on - strand, within DZA65_RS01540 at 336.883 kb on - strand, within DZA65_RS01540 at 336.996 kb on - strand, within DZA65_RS01540 at 336.996 kb on - strand, within DZA65_RS01540 at 336.996 kb on - strand, within DZA65_RS01540 at 337.172 kb on + strand, within DZA65_RS01540 at 337.173 kb on - strand, within DZA65_RS01540 at 337.173 kb on - strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.195 kb on - strand, within DZA65_RS01540 at 337.195 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.296 kb on - strand, within DZA65_RS01540 at 337.343 kb on - strand at 337.343 kb on - strand at 337.343 kb on - strand at 337.364 kb on - strand at 337.371 kb on + strand at 337.389 kb on + strand at 337.390 kb on - strand at 337.390 kb on - strand at 337.390 kb on - strand at 337.425 kb on - strand at 337.425 kb on - strand at 337.432 kb on + strand at 337.433 kb on - strand at 337.433 kb on - strand at 337.433 kb on - strand at 337.433 kb on - strand at 337.434 kb on + strand at 337.434 kb on + strand at 337.435 kb on - strand at 337.435 kb on - strand at 337.447 kb on - strand at 337.478 kb on + strand at 337.479 kb on - strand at 337.479 kb on - strand at 337.479 kb on - strand at 337.514 kb on - strand at 337.514 kb on - strand at 337.577 kb on + strand at 337.577 kb on + strand at 337.577 kb on + strand at 337.578 kb on - strand at 337.578 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.605 kb on + strand at 337.606 kb on - strand at 337.687 kb on + strand at 337.687 kb on + strand at 337.687 kb on + strand at 337.688 kb on - strand at 337.688 kb on - strand at 337.688 kb on - strand at 337.899 kb on + strand, within DZA65_RS01545 at 337.899 kb on + strand, within DZA65_RS01545 at 337.900 kb on - strand, within DZA65_RS01545 at 338.025 kb on + strand, within DZA65_RS01545 at 338.026 kb on - strand, within DZA65_RS01545 at 338.245 kb on - strand, within DZA65_RS01545 at 338.326 kb on + strand, within DZA65_RS01545 at 338.327 kb on - strand, within DZA65_RS01545 at 338.327 kb on - strand, within DZA65_RS01545 at 338.332 kb on + strand, within DZA65_RS01545 at 338.332 kb on + strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.337 kb on + strand, within DZA65_RS01545 at 338.468 kb on - strand at 338.497 kb on - strand at 338.497 kb on - strand at 338.497 kb on - strand at 338.497 kb on - strand at 338.500 kb on + strand at 338.500 kb on + strand at 338.501 kb on - strand at 338.501 kb on - strand at 338.501 kb on - strand at 338.501 kb on - strand at 338.501 kb on - strand at 338.510 kb on + strand at 338.510 kb on + strand at 338.511 kb on - strand at 338.650 kb on + strand, within DZA65_RS01550 at 338.650 kb on + strand at 338.651 kb on - strand, within DZA65_RS01550 at 338.651 kb on - strand, within DZA65_RS01550 at 338.651 kb on - strand, within DZA65_RS01550 at 338.651 kb on - strand, within DZA65_RS01550 at 338.651 kb on - strand, within DZA65_RS01550 at 338.651 kb on - strand, within DZA65_RS01550 at 338.652 kb on + strand, within DZA65_RS01550 at 338.688 kb on - strand, within DZA65_RS01550 at 338.697 kb on - strand, within DZA65_RS01550 at 338.697 kb on - strand, within DZA65_RS01550 at 338.732 kb on + strand, within DZA65_RS01550 at 338.733 kb on - strand, within DZA65_RS01550 at 338.733 kb on - strand, within DZA65_RS01550 at 338.733 kb on - strand, within DZA65_RS01550 at 338.743 kb on - strand, within DZA65_RS01550 at 338.746 kb on + strand, within DZA65_RS01550 at 338.747 kb on - strand, within DZA65_RS01550 at 338.747 kb on - strand, within DZA65_RS01550 at 338.747 kb on - strand, within DZA65_RS01550 at 338.747 kb on - strand, within DZA65_RS01550 at 338.747 kb on - strand, within DZA65_RS01550 at 338.892 kb on - strand, within DZA65_RS01550 at 338.892 kb on - strand, within DZA65_RS01550 at 338.899 kb on - strand, within DZA65_RS01550 at 338.915 kb on + strand, within DZA65_RS01550 at 338.915 kb on + strand, within DZA65_RS01550 at 338.916 kb on - strand, within DZA65_RS01550 at 338.916 kb on - strand, within DZA65_RS01550 at 339.243 kb on - strand at 339.327 kb on + strand at 339.328 kb on - strand at 339.363 kb on + strand, within DZA65_RS01555 at 339.363 kb on + strand, within DZA65_RS01555 at 339.363 kb on + strand at 339.364 kb on - strand, within DZA65_RS01555 at 339.364 kb on - strand, within DZA65_RS01555 at 339.364 kb on - strand, within DZA65_RS01555 at 339.410 kb on + strand, within DZA65_RS01555 at 339.411 kb on - strand, within DZA65_RS01555 at 339.436 kb on + strand, within DZA65_RS01555 at 339.449 kb on - strand, within DZA65_RS01555 at 339.483 kb on + strand, within DZA65_RS01555 at 339.483 kb on + strand, within DZA65_RS01555 at 339.483 kb on + strand, within DZA65_RS01555 at 339.484 kb on - strand, within DZA65_RS01555 at 339.484 kb on - strand, within DZA65_RS01555 at 339.484 kb on - strand, within DZA65_RS01555 at 339.484 kb on - strand, within DZA65_RS01555 at 339.502 kb on + strand, within DZA65_RS01555
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 336,720 - DZA65_RS01540 0.28 -0.2 336,797 + DZA65_RS01540 0.36 -1.9 336,798 - DZA65_RS01540 0.36 +0.0 336,801 - DZA65_RS01540 0.36 -1.5 336,801 - DZA65_RS01540 0.36 -0.3 336,801 - DZA65_RS01540 0.36 +0.3 336,801 - DZA65_RS01540 0.36 -0.5 336,805 + DZA65_RS01540 0.37 -1.5 336,806 - +1.3 336,806 - DZA65_RS01540 0.37 -0.1 336,806 - DZA65_RS01540 0.37 -0.9 336,806 - +1.9 336,806 - DZA65_RS01540 0.37 +0.1 336,861 - DZA65_RS01540 0.43 +1.5 336,861 - DZA65_RS01540 0.43 -0.1 336,861 - DZA65_RS01540 0.43 +0.1 336,883 - DZA65_RS01540 0.45 +0.0 336,996 - DZA65_RS01540 0.57 -0.3 336,996 - DZA65_RS01540 0.57 -1.3 336,996 - DZA65_RS01540 0.57 -3.0 337,172 + DZA65_RS01540 0.75 -2.0 337,173 - DZA65_RS01540 0.75 +0.5 337,173 - DZA65_RS01540 0.75 -0.1 337,194 + DZA65_RS01540 0.77 -1.0 337,194 + DZA65_RS01540 0.77 -0.9 337,194 + DZA65_RS01540 0.77 -0.9 337,194 + DZA65_RS01540 0.77 -0.7 337,195 - DZA65_RS01540 0.77 -0.3 337,195 - DZA65_RS01540 0.77 +1.7 337,279 - DZA65_RS01540 0.86 +1.3 337,279 - DZA65_RS01540 0.86 -1.1 337,279 - DZA65_RS01540 0.86 +0.6 337,279 - DZA65_RS01540 0.86 -1.1 337,279 - DZA65_RS01540 0.86 -0.5 337,279 - DZA65_RS01540 0.86 -0.7 337,296 - DZA65_RS01540 0.88 -0.7 337,343 - +1.9 337,343 - +0.0 337,343 - -0.1 337,364 - +0.5 337,371 + +0.9 337,389 + -0.7 337,390 - -0.9 337,390 - +0.5 337,390 - -0.9 337,425 - -1.4 337,425 - +0.3 337,432 + -1.6 337,433 - +0.6 337,433 - +0.2 337,433 - +0.6 337,433 - +0.1 337,434 + +1.2 337,434 + +1.0 337,435 - +1.2 337,435 - +0.6 337,447 - +1.6 337,478 + +0.9 337,479 - -0.1 337,479 - +0.2 337,479 - -1.1 337,514 - +1.2 337,514 - +0.5 337,577 + +1.1 337,577 + +1.6 337,577 + +0.9 337,578 - -0.6 337,578 - -1.5 337,592 - +1.2 337,592 - -0.4 337,592 - +1.4 337,592 - -0.1 337,592 - -0.5 337,605 + -0.8 337,606 - +0.3 337,687 + -1.0 337,687 + -1.7 337,687 + -1.7 337,688 - +1.4 337,688 - -1.1 337,688 - -1.2 337,899 + DZA65_RS01545 0.25 +1.3 337,899 + DZA65_RS01545 0.25 -0.9 337,900 - DZA65_RS01545 0.26 -1.9 338,025 + DZA65_RS01545 0.41 -0.7 338,026 - DZA65_RS01545 0.41 -0.1 338,245 - DZA65_RS01545 0.68 +0.3 338,326 + DZA65_RS01545 0.78 +0.9 338,327 - DZA65_RS01545 0.78 -1.1 338,327 - DZA65_RS01545 0.78 -0.7 338,332 + DZA65_RS01545 0.79 -1.1 338,332 + DZA65_RS01545 0.79 +2.4 338,333 - DZA65_RS01545 0.79 -1.0 338,333 - DZA65_RS01545 0.79 -2.8 338,333 - DZA65_RS01545 0.79 -0.1 338,333 - DZA65_RS01545 0.79 +0.6 338,333 - DZA65_RS01545 0.79 -0.1 338,333 - DZA65_RS01545 0.79 -2.0 338,333 - DZA65_RS01545 0.79 -0.1 338,333 - DZA65_RS01545 0.79 -1.5 338,337 + DZA65_RS01545 0.80 -1.1 338,468 - +0.5 338,497 - -0.5 338,497 - -0.6 338,497 - -1.5 338,497 - -0.1 338,500 + -2.7 338,500 + -1.7 338,501 - -0.7 338,501 - -1.9 338,501 - -1.9 338,501 - +0.4 338,501 - -0.9 338,510 + -2.7 338,510 + -1.1 338,511 - -0.7 338,650 + DZA65_RS01550 0.18 -1.5 338,650 + +0.9 338,651 - DZA65_RS01550 0.19 -2.7 338,651 - DZA65_RS01550 0.19 -2.0 338,651 - DZA65_RS01550 0.19 -0.8 338,651 - DZA65_RS01550 0.19 -1.5 338,651 - DZA65_RS01550 0.19 +0.9 338,651 - DZA65_RS01550 0.19 +0.3 338,652 + DZA65_RS01550 0.19 -2.3 338,688 - DZA65_RS01550 0.23 +1.2 338,697 - DZA65_RS01550 0.24 -0.1 338,697 - DZA65_RS01550 0.24 -0.1 338,732 + DZA65_RS01550 0.29 +0.1 338,733 - DZA65_RS01550 0.29 -1.7 338,733 - DZA65_RS01550 0.29 -2.0 338,733 - DZA65_RS01550 0.29 -2.0 338,743 - DZA65_RS01550 0.30 -1.4 338,746 + DZA65_RS01550 0.31 -1.5 338,747 - DZA65_RS01550 0.31 +1.0 338,747 - DZA65_RS01550 0.31 -2.0 338,747 - DZA65_RS01550 0.31 -2.1 338,747 - DZA65_RS01550 0.31 +0.2 338,747 - DZA65_RS01550 0.31 -0.1 338,892 - DZA65_RS01550 0.49 -1.5 338,892 - DZA65_RS01550 0.49 -1.9 338,899 - DZA65_RS01550 0.50 -1.1 338,915 + DZA65_RS01550 0.52 -3.5 338,915 + DZA65_RS01550 0.52 -1.7 338,916 - DZA65_RS01550 0.52 +0.5 338,916 - DZA65_RS01550 0.52 -0.2 339,243 - -2.9 339,327 + -0.7 339,328 - -2.1 339,363 + DZA65_RS01555 0.11 -1.1 339,363 + DZA65_RS01555 0.11 -1.7 339,363 + -1.1 339,364 - DZA65_RS01555 0.12 -1.8 339,364 - DZA65_RS01555 0.12 +0.3 339,364 - DZA65_RS01555 0.12 -1.0 339,410 + DZA65_RS01555 0.19 -1.1 339,411 - DZA65_RS01555 0.19 -0.1 339,436 + DZA65_RS01555 0.23 -0.7 339,449 - DZA65_RS01555 0.25 -1.9 339,483 + DZA65_RS01555 0.31 -0.9 339,483 + DZA65_RS01555 0.31 +0.3 339,483 + DZA65_RS01555 0.31 -2.5 339,484 - DZA65_RS01555 0.31 -0.5 339,484 - DZA65_RS01555 0.31 -1.5 339,484 - DZA65_RS01555 0.31 -0.7 339,484 - DZA65_RS01555 0.31 -0.1 339,502 + DZA65_RS01555 0.34 -1.6
Or see this region's nucleotide sequence