Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00445

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	Norland
				remove
106,812	-			-0.5
106,862	+			+0.7
106,862	+			-0.1
106,862	+			-0.4
106,862	+			+0.1
106,862	+			+0.1
106,862	+			-1.1
106,863	-			+0.6
106,863	-			-0.0
106,863	-			+0.9
106,863	-			+0.0
106,863	-			+2.2
106,863	-			+0.4
106,863	-			-0.1
106,863	-			-0.6
106,863	-			-0.4
106,863	-			+0.8
106,863	-			+0.3
106,863	-			-0.7
106,866	+			+0.9
106,866	+			+0.6
106,866	+			-0.8
106,866	+			+0.2
106,866	+			-0.7
106,866	+			-1.8
106,867	-			+0.5
106,867	-			+0.6
106,867	-			+0.2
106,879	-			-1.2
106,879	-			-0.1
106,893	-			-0.3
106,968	+	DZA65_RS00440	0.19	-1.2
106,981	-	DZA65_RS00440	0.21	+0.9
107,192	+	DZA65_RS00440	0.53	+0.2
107,193	-	DZA65_RS00440	0.53	-0.1
107,193	-	DZA65_RS00440	0.53	+0.3
107,195	+	DZA65_RS00440	0.54	+0.1
107,195	+	DZA65_RS00440	0.54	+2.7
107,196	-	DZA65_RS00440	0.54	+1.4
107,210	+	DZA65_RS00440	0.56	-2.2
107,274	+	DZA65_RS00440	0.66	-1.1
107,309	+	DZA65_RS00440	0.71	-0.8
107,309	+	DZA65_RS00440	0.71	-1.7
107,310	-	DZA65_RS00440	0.71	+0.7
107,403	-	DZA65_RS00440	0.86	-1.4
107,403	-	DZA65_RS00440	0.86	-1.9
107,546	+			-1.4
107,546	+			-0.1
107,547	-			+1.2
107,573	+			+0.9
107,574	-			-0.7
107,636	+			-1.2
107,636	+			-1.4
107,636	+			+0.1
107,637	-			+0.4
107,637	-			+1.2
107,637	-			+0.8
107,637	-			+1.2
107,637	-			-0.4
107,637	-			+0.5
107,637	-			-0.7
107,637	-			-1.4
107,637	-			+0.6
107,637	-			+0.9
107,688	+			+0.2
107,688	+			-0.9
107,688	+			-1.2
107,689	-			-0.2
107,689	-			+0.7
107,689	-			+0.4
107,689	-			-1.1
107,689	-			+1.4
107,689	-			-0.1
107,689	-			-0.8
107,689	-			-0.7
107,691	+			+0.0
107,691	+			-0.8
107,691	+			-0.7
107,691	+			+0.4
107,691	+			-0.5
107,691	+			-0.4
107,691	+			-1.4
107,691	+			-0.7
107,691	+			+0.2
107,691	+			+0.7
107,691	+			+0.9
107,691	+			+0.2
107,691	+			+0.5
107,691	+			+0.3
107,691	+			+0.1
107,692	-			+0.1
107,692	-			+1.1
107,692	-			+0.1
107,692	-			-0.9
107,692	-			+1.9
107,692	-			+0.3
107,692	-			-0.5
107,692	-			+0.3
107,692	-			-0.1
107,692	-			-0.5
107,692	-			-0.2
107,692	-			-0.2
107,692	-			-0.3
107,697	+			-1.1
107,697	+			-0.1
107,698	-			-0.1
107,698	-			+0.2
107,702	+			+0.9
107,702	+			+0.1
107,702	+			-1.1
107,702	+			+3.2
107,702	+			+0.2
107,702	+			-1.1
107,702	+			+0.3
107,702	+			-0.3
107,702	+			+2.7
107,702	+			+0.3
107,703	-			-1.7
107,703	-			-2.1
107,703	-			+0.2
107,703	-			+0.2
107,703	-			+0.7
107,703	-			-0.8
107,703	-			-2.4
107,703	-			-1.7
107,703	-			-1.1
107,703	-			-0.7
107,703	-			-0.1
107,703	-			+1.7
107,703	-			-0.4
107,703	-			-0.5
107,703	-			+0.4
107,706	+			-1.0
107,742	-			+0.8
107,752	-			-0.8
107,755	+			+0.7
107,755	+			+0.0
107,755	+			+1.2
107,755	+			+0.7
107,755	+			-0.1
107,755	+			-1.7
107,756	-			-0.7
107,756	-			+0.5
107,914	+	DZA65_RS00445	0.14	-1.4
107,914	+	DZA65_RS00445	0.14	-0.8
107,914	+	DZA65_RS00445	0.14	-1.0
107,915	-	DZA65_RS00445	0.15	+2.1
107,915	-	DZA65_RS00445	0.15	-0.9
107,983	+	DZA65_RS00445	0.22	-0.3
107,984	-	DZA65_RS00445	0.22	-0.8
107,984	-	DZA65_RS00445	0.22	+0.9
107,997	+	DZA65_RS00445	0.23	-2.2
108,018	+	DZA65_RS00445	0.26	+0.9
108,019	-	DZA65_RS00445	0.26	-0.5
108,053	+	DZA65_RS00445	0.29	-0.2
108,054	-	DZA65_RS00445	0.29	-0.9
108,054	-	DZA65_RS00445	0.29	-0.2
108,060	+	DZA65_RS00445	0.30	+0.2
108,061	-	DZA65_RS00445	0.30	+0.7
108,061	-	DZA65_RS00445	0.30	-0.2
108,061	-	DZA65_RS00445	0.30	-0.2
108,094	+	DZA65_RS00445	0.34	-1.4
108,094	+	DZA65_RS00445	0.34	-0.7
108,094	+	DZA65_RS00445	0.34	-1.4
108,095	-	DZA65_RS00445	0.34	+0.9
108,095	-	DZA65_RS00445	0.34	+3.2
108,095	-	DZA65_RS00445	0.34	+0.8
108,159	-	DZA65_RS00445	0.41	+0.6
108,160	+	DZA65_RS00445	0.41	+1.1
108,160	+	DZA65_RS00445	0.41	+0.9
108,160	+	DZA65_RS00445	0.41	-0.7
108,160	+	DZA65_RS00445	0.41	-0.2
108,160	+	DZA65_RS00445	0.41	+1.1
108,160	+	DZA65_RS00445	0.41	+0.5
108,160	+	DZA65_RS00445	0.41	-0.5
108,160	+	DZA65_RS00445	0.41	-0.4
108,161	-	DZA65_RS00445	0.41	-0.5
108,161	-	DZA65_RS00445	0.41	-0.2
108,161	-	DZA65_RS00445	0.41	+0.1
108,171	+	DZA65_RS00445	0.42	-0.5
108,171	+	DZA65_RS00445	0.42	+0.5
108,171	+	DZA65_RS00445	0.42	-1.7
108,171	+	DZA65_RS00445	0.42	-1.9
108,171	+	DZA65_RS00445	0.42	+1.1
108,171	+	DZA65_RS00445	0.42	-1.1
108,171	+	DZA65_RS00445	0.42	+1.1
108,172	-	DZA65_RS00445	0.42	+1.5
108,172	-	DZA65_RS00445	0.42	+0.3
108,172	-	DZA65_RS00445	0.42	-0.3
108,172	-	DZA65_RS00445	0.42	-0.0
108,172	-	DZA65_RS00445	0.42	-0.3
108,172	-	DZA65_RS00445	0.42	-0.7
108,172	-	DZA65_RS00445	0.42	+0.2
108,172	-	DZA65_RS00445	0.42	+0.3
108,201	+	DZA65_RS00445	0.45	+0.8
108,233	+	DZA65_RS00445	0.48	+0.1
108,233	+	DZA65_RS00445	0.48	-1.9
108,234	-	DZA65_RS00445	0.49	-1.7
108,234	-	DZA65_RS00445	0.49	+0.1
108,234	-	DZA65_RS00445	0.49	-2.1
108,247	+	DZA65_RS00445	0.50	-0.1
108,248	-	DZA65_RS00445	0.50	+0.9
108,248	-	DZA65_RS00445	0.50	-0.0
108,278	+	DZA65_RS00445	0.53	-1.0
108,278	+			+2.2
108,354	+	DZA65_RS00445	0.61	+0.0
108,355	-	DZA65_RS00445	0.61	+0.5
108,355	-	DZA65_RS00445	0.61	-1.8
108,385	+	DZA65_RS00445	0.65	-0.9
108,385	+	DZA65_RS00445	0.65	-1.1
108,385	+	DZA65_RS00445	0.65	-0.8
108,386	-	DZA65_RS00445	0.65	+0.9
108,408	-	DZA65_RS00445	0.67	+0.9
108,481	+	DZA65_RS00445	0.75	+0.1
108,481	+	DZA65_RS00445	0.75	-1.1
108,481	+	DZA65_RS00445	0.75	-0.3
108,481	+	DZA65_RS00445	0.75	+1.6
108,481	+	DZA65_RS00445	0.75	-1.9
108,481	+	DZA65_RS00445	0.75	+1.5
108,482	-	DZA65_RS00445	0.75	+0.5
108,482	-			+1.7
108,482	-	DZA65_RS00445	0.75	-1.1
108,482	-	DZA65_RS00445	0.75	-0.3
108,482	-	DZA65_RS00445	0.75	-0.3
108,485	+	DZA65_RS00445	0.75	-0.7
108,485	+	DZA65_RS00445	0.75	+1.3
108,485	+	DZA65_RS00445	0.75	+0.3
108,485	+	DZA65_RS00445	0.75	+0.1
108,485	+	DZA65_RS00445	0.75	-0.1
108,486	-	DZA65_RS00445	0.75	+0.6
108,486	-	DZA65_RS00445	0.75	-1.4
108,486	-	DZA65_RS00445	0.75	-0.1
108,486	-	DZA65_RS00445	0.75	-0.9
108,486	-	DZA65_RS00445	0.75	+1.4
108,486	-	DZA65_RS00445	0.75	-0.2
108,486	-	DZA65_RS00445	0.75	-0.9
108,486	-	DZA65_RS00445	0.75	+1.8
108,486	-	DZA65_RS00445	0.75	+1.3
108,528	+	DZA65_RS00445	0.80	-0.9
108,528	+	DZA65_RS00445	0.80	-0.5
108,528	+	DZA65_RS00445	0.80	-0.5
108,528	+	DZA65_RS00445	0.80	-2.2
108,529	-	DZA65_RS00445	0.80	-0.5
108,529	-	DZA65_RS00445	0.80	+2.7
108,529	-	DZA65_RS00445	0.80	-1.4
108,656	+			+0.1
108,657	-			+0.3
108,657	-			+0.4
108,720	+			-1.9
108,720	+			+0.2
108,721	-			+0.4
108,721	-			-1.7
108,721	-			+0.5
108,756	-			+0.1
108,756	-			+0.9
108,774	-			-0.1
108,774	-			+1.3
108,774	-			+0.3
108,816	-			+0.1
108,833	+			+1.7
108,833	+			-1.3
108,965	-	DZA65_RS00450	0.24	-1.7
108,997	+	DZA65_RS00450	0.28	-0.9
108,997	+	DZA65_RS00450	0.28	-0.9
108,997	+	DZA65_RS00450	0.28	-0.1
108,997	+	DZA65_RS00450	0.28	+2.5
108,997	+	DZA65_RS00450	0.28	+0.0
108,998	-	DZA65_RS00450	0.28	+0.6
108,998	-	DZA65_RS00450	0.28	-0.1
108,998	-	DZA65_RS00450	0.28	+0.1
108,998	-	DZA65_RS00450	0.28	-0.4
108,998	-	DZA65_RS00450	0.28	-0.1
108,998	-	DZA65_RS00450	0.28	+0.7
108,998	-	DZA65_RS00450	0.28	-1.1
108,998	-	DZA65_RS00450	0.28	+0.4
109,146	-	DZA65_RS00450	0.47	+0.3
109,304	+	DZA65_RS00450	0.67	-1.7
109,304	+	DZA65_RS00450	0.67	+0.5
109,304	+	DZA65_RS00450	0.67	-0.1
109,304	+	DZA65_RS00450	0.67	+0.2
109,304	+	DZA65_RS00450	0.67	-1.4
109,304	+	DZA65_RS00450	0.67	+1.5
109,304	+	DZA65_RS00450	0.67	+1.2
109,304	+	DZA65_RS00450	0.67	-0.8
109,304	+	DZA65_RS00450	0.67	-1.7
109,304	+	DZA65_RS00450	0.67	-0.1
109,304	+	DZA65_RS00450	0.67	-1.1
109,304	+	DZA65_RS00450	0.67	+0.5
109,305	-	DZA65_RS00450	0.67	+0.4
109,305	-	DZA65_RS00450	0.67	-0.5
109,305	-	DZA65_RS00450	0.67	+0.3
109,305	-	DZA65_RS00450	0.67	-1.1
109,305	-	DZA65_RS00450	0.67	-0.3
109,305	-	DZA65_RS00450	0.67	+0.5
109,305	-	DZA65_RS00450	0.67	+1.2
109,305	-	DZA65_RS00450	0.67	+0.7
109,305	-	DZA65_RS00450	0.67	+1.9
109,305	-	DZA65_RS00450	0.67	-0.9
109,305	-	DZA65_RS00450	0.67	+0.9
109,305	-	DZA65_RS00450	0.67	-1.5
109,305	-	DZA65_RS00450	0.67	-1.1
109,305	-	DZA65_RS00450	0.67	-0.9
109,520	+			-0.1
109,520	+			+0.0
109,520	+			+0.1
109,520	+			+1.9
109,521	-			+1.3
109,521	-			+0.3
109,521	-			-0.0
109,532	+			+0.1
109,533	-			+0.4
109,533	-			-0.1
109,533	-			+1.6
109,533	-			-0.7
109,535	+			-0.7
109,535	+			-1.7
109,535	+			-2.1
109,535	+			+2.3
109,536	-			-1.9
109,536	-			-0.4
109,536	-			+0.9
109,536	-			+0.8
109,600	+			+0.9
109,600	+			-1.7
109,601	-			+0.7
109,619	+			-2.2
109,619	+			+0.9
109,619	+			-0.4
109,619	+			+0.3
109,619	+			+0.2
109,619	+			-1.4
109,619	+			-0.9
109,619	+			-1.3
109,619	+			-0.4
109,619	+			-0.8
109,619	+			-1.1
109,619	+			+1.7
109,619	+			-1.1
109,619	+			-0.4
109,620	-			-2.2
109,620	-			-1.4
109,620	-			-0.9
109,620	-			-1.3
109,620	-			-3.1
109,620	-			-2.2
109,620	-			+0.5
109,620	-			+0.3
109,620	-			+1.3
109,620	-			+1.1
109,650	+			-0.1
109,650	+			-0.1
109,650	+			+0.5
109,651	-			+0.3
109,651	-			-0.7
109,651	-			-0.1
109,698	+			+0.2
109,698	+			-0.2
109,698	+			-0.6
109,698	+			+0.4
109,698	+			-0.9
109,698	+			+0.5
109,698	+			+0.5
109,698	+			-1.5
109,699	-			-1.7
109,699	-			+1.4
109,699	-			+0.5

Or see this region's nucleotide sequence