Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00435

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Norland
				remove
105,099	-	DZA65_RS00430	0.22	+0.1
105,117	-	DZA65_RS00430	0.23	+0.2
105,168	+	DZA65_RS00430	0.27	+0.3
105,168	+	DZA65_RS00430	0.27	+0.7
105,168	+	DZA65_RS00430	0.27	+0.2
105,168	+	DZA65_RS00430	0.27	+0.5
105,168	+			+0.5
105,168	+	DZA65_RS00430	0.27	+1.9
105,168	+	DZA65_RS00430	0.27	+0.4
105,168	+	DZA65_RS00430	0.27	+0.5
105,168	+	DZA65_RS00430	0.27	-1.4
105,168	+	DZA65_RS00430	0.27	-1.7
105,168	+	DZA65_RS00430	0.27	+0.7
105,168	+	DZA65_RS00430	0.27	+0.3
105,168	+	DZA65_RS00430	0.27	-1.1
105,168	+	DZA65_RS00430	0.27	+0.1
105,169	-	DZA65_RS00430	0.27	+2.7
105,169	-	DZA65_RS00430	0.27	+0.5
105,169	-	DZA65_RS00430	0.27	+2.3
105,169	-	DZA65_RS00430	0.27	+1.3
105,169	-	DZA65_RS00430	0.27	+0.2
105,169	-	DZA65_RS00430	0.27	+2.2
105,169	-	DZA65_RS00430	0.27	+0.3
105,169	-	DZA65_RS00430	0.27	-0.1
105,169	-	DZA65_RS00430	0.27	-0.4
105,169	-	DZA65_RS00430	0.27	+1.0
105,169	-	DZA65_RS00430	0.27	-0.1
105,169	-	DZA65_RS00430	0.27	+0.1
105,169	-	DZA65_RS00430	0.27	+1.5
105,169	-	DZA65_RS00430	0.27	-1.9
105,169	-	DZA65_RS00430	0.27	+0.4
105,169	-	DZA65_RS00430	0.27	+0.9
105,169	-	DZA65_RS00430	0.27	+0.7
105,169	-	DZA65_RS00430	0.27	+0.9
105,169	-	DZA65_RS00430	0.27	+2.1
105,171	+	DZA65_RS00430	0.27	+1.1
105,171	+	DZA65_RS00430	0.27	+1.1
105,171	+	DZA65_RS00430	0.27	+0.9
105,171	+	DZA65_RS00430	0.27	-0.1
105,171	+	DZA65_RS00430	0.27	+0.5
105,171	+	DZA65_RS00430	0.27	+0.5
105,171	+	DZA65_RS00430	0.27	+2.1
105,171	+	DZA65_RS00430	0.27	+2.0
105,171	+	DZA65_RS00430	0.27	-0.4
105,171	+	DZA65_RS00430	0.27	-0.4
105,171	+	DZA65_RS00430	0.27	+3.0
105,171	+	DZA65_RS00430	0.27	-0.1
105,171	+	DZA65_RS00430	0.27	+1.8
105,171	+	DZA65_RS00430	0.27	-1.3
105,171	+	DZA65_RS00430	0.27	+1.1
105,171	+	DZA65_RS00430	0.27	-1.2
105,171	+	DZA65_RS00430	0.27	+0.6
105,171	+	DZA65_RS00430	0.27	+0.8
105,171	+	DZA65_RS00430	0.27	+1.2
105,171	+	DZA65_RS00430	0.27	-1.7
105,172	-	DZA65_RS00430	0.27	+1.0
105,172	-	DZA65_RS00430	0.27	-0.2
105,172	-	DZA65_RS00430	0.27	+1.3
105,172	-	DZA65_RS00430	0.27	+0.8
105,172	-	DZA65_RS00430	0.27	+1.2
105,172	-	DZA65_RS00430	0.27	-0.1
105,172	-	DZA65_RS00430	0.27	-0.0
105,172	-	DZA65_RS00430	0.27	+0.2
105,172	-	DZA65_RS00430	0.27	-1.3
105,172	-	DZA65_RS00430	0.27	+1.8
105,172	-	DZA65_RS00430	0.27	+0.3
105,172	-	DZA65_RS00430	0.27	-0.1
105,172	-	DZA65_RS00430	0.27	+0.1
105,172	-	DZA65_RS00430	0.27	+1.4
105,204	-	DZA65_RS00430	0.30	+0.4
105,204	-	DZA65_RS00430	0.30	-0.7
105,445	+	DZA65_RS00430	0.48	+1.5
105,445	+	DZA65_RS00430	0.48	-0.7
105,445	+	DZA65_RS00430	0.48	+0.7
105,516	-	DZA65_RS00430	0.53	+0.6
105,593	+	DZA65_RS00430	0.59	+2.2
105,594	-	DZA65_RS00430	0.59	+1.3
105,594	-	DZA65_RS00430	0.59	+0.6
105,677	+	DZA65_RS00430	0.65	-1.2
105,678	-	DZA65_RS00430	0.65	-0.7
105,678	-	DZA65_RS00430	0.65	+0.5
105,678	-	DZA65_RS00430	0.65	+2.4
105,681	+	DZA65_RS00430	0.66	-0.3
105,681	+	DZA65_RS00430	0.66	-0.2
105,681	+	DZA65_RS00430	0.66	+0.9
105,682	-	DZA65_RS00430	0.66	+0.9
105,838	+	DZA65_RS00430	0.78	+0.9
105,838	+	DZA65_RS00430	0.78	+0.8
105,838	+	DZA65_RS00430	0.78	-0.0
105,838	+	DZA65_RS00430	0.78	+1.7
105,838	+	DZA65_RS00430	0.78	+0.5
105,838	+	DZA65_RS00430	0.78	+1.3
105,839	-	DZA65_RS00430	0.78	+0.2
105,839	-	DZA65_RS00430	0.78	+0.5
105,839	-	DZA65_RS00430	0.78	+0.6
105,839	-	DZA65_RS00430	0.78	+0.5
105,839	-	DZA65_RS00430	0.78	+0.6
105,839	-	DZA65_RS00430	0.78	-0.4
105,932	+	DZA65_RS00430	0.85	+0.2
105,942	-	DZA65_RS00430	0.85	-0.6
105,993	+	DZA65_RS00430	0.89	+0.2
105,993	+	DZA65_RS00430	0.89	+0.5
105,994	-	DZA65_RS00430	0.89	-0.2
105,994	-	DZA65_RS00430	0.89	+1.9
105,994	-	DZA65_RS00430	0.89	-0.1
105,994	-	DZA65_RS00430	0.89	+0.6
105,994	-	DZA65_RS00430	0.89	+0.9
105,995	+	DZA65_RS00430	0.89	+0.4
105,995	+	DZA65_RS00430	0.89	+0.0
105,995	+	DZA65_RS00430	0.89	+1.9
105,996	-	DZA65_RS00430	0.90	+1.0
105,996	-	DZA65_RS00430	0.90	-0.9
105,996	-	DZA65_RS00430	0.90	+1.4
105,996	-	DZA65_RS00430	0.90	-1.1
105,996	-	DZA65_RS00430	0.90	-1.1
105,996	-	DZA65_RS00430	0.90	+0.9
106,112	+			+0.6
106,112	+			-0.3
106,112	+			+0.6
106,112	+			+0.7
106,329	-	DZA65_RS00435	0.31	-0.1
106,329	-	DZA65_RS00435	0.31	-0.5
106,329	-	DZA65_RS00435	0.31	+0.7
106,365	-	DZA65_RS00435	0.36	-0.7
106,402	-	DZA65_RS00435	0.40	-0.7
106,445	+	DZA65_RS00435	0.46	-0.9
106,485	+	DZA65_RS00435	0.51	+0.3
106,485	+	DZA65_RS00435	0.51	+1.4
106,486	-	DZA65_RS00435	0.51	-0.1
106,535	+	DZA65_RS00435	0.58	-1.4
106,535	+	DZA65_RS00435	0.58	-1.5
106,600	+	DZA65_RS00435	0.66	-0.3
106,600	+	DZA65_RS00435	0.66	-1.9
106,600	+	DZA65_RS00435	0.66	+0.1
106,600	+	DZA65_RS00435	0.66	-0.9
106,600	+	DZA65_RS00435	0.66	-0.7
106,600	+	DZA65_RS00435	0.66	+2.8
106,600	+	DZA65_RS00435	0.66	-0.1
106,600	+	DZA65_RS00435	0.66	+0.5
106,600	+	DZA65_RS00435	0.66	+1.4
106,600	+	DZA65_RS00435	0.66	-0.1
106,600	+	DZA65_RS00435	0.66	+0.9
106,600	+	DZA65_RS00435	0.66	-1.7
106,600	+	DZA65_RS00435	0.66	-0.9
106,600	+	DZA65_RS00435	0.66	+1.1
106,600	+	DZA65_RS00435	0.66	+1.5
106,601	-	DZA65_RS00435	0.66	+0.1
106,601	-			+1.2
106,601	-	DZA65_RS00435	0.66	+1.3
106,601	-	DZA65_RS00435	0.66	+0.0
106,601	-	DZA65_RS00435	0.66	-0.7
106,601	-	DZA65_RS00435	0.66	+0.9
106,601	-	DZA65_RS00435	0.66	-1.8
106,601	-	DZA65_RS00435	0.66	-0.5
106,601	-	DZA65_RS00435	0.66	-0.7
106,601	-	DZA65_RS00435	0.66	-1.4
106,601	-	DZA65_RS00435	0.66	-0.0
106,601	-	DZA65_RS00435	0.66	+0.1
106,601	-	DZA65_RS00435	0.66	-0.2
106,601	-	DZA65_RS00435	0.66	-1.1
106,601	-	DZA65_RS00435	0.66	+0.6
106,601	-	DZA65_RS00435	0.66	-0.4
106,601	-	DZA65_RS00435	0.66	-1.4
106,601	-	DZA65_RS00435	0.66	+0.9
106,601	-	DZA65_RS00435	0.66	-1.1
106,601	-	DZA65_RS00435	0.66	-1.7
106,602	+	DZA65_RS00435	0.66	-0.5
106,602	+	DZA65_RS00435	0.66	-2.1
106,602	+	DZA65_RS00435	0.66	+0.6
106,602	+	DZA65_RS00435	0.66	-0.2
106,602	+	DZA65_RS00435	0.66	-0.2
106,602	+	DZA65_RS00435	0.66	+0.0
106,603	-	DZA65_RS00435	0.67	-1.6
106,731	+	DZA65_RS00435	0.83	+0.1
106,759	+	DZA65_RS00435	0.87	-0.3
106,760	-	DZA65_RS00435	0.87	-0.4
106,760	-	DZA65_RS00435	0.87	-1.2
106,760	-	DZA65_RS00435	0.87	+0.7
106,760	-	DZA65_RS00435	0.87	-0.7
106,812	-			-0.5
106,862	+			+0.7
106,862	+			-0.1
106,862	+			-0.4
106,862	+			+0.1
106,862	+			+0.1
106,862	+			-1.1
106,863	-			+0.6
106,863	-			-0.0
106,863	-			+0.9
106,863	-			+0.0
106,863	-			+2.2
106,863	-			+0.4
106,863	-			-0.1
106,863	-			-0.6
106,863	-			-0.4
106,863	-			+0.8
106,863	-			+0.3
106,863	-			-0.7
106,866	+			+0.9
106,866	+			+0.6
106,866	+			-0.8
106,866	+			+0.2
106,866	+			-0.7
106,866	+			-1.8
106,867	-			+0.5
106,867	-			+0.6
106,867	-			+0.2
106,879	-			-1.2
106,879	-			-0.1
106,893	-			-0.3
106,968	+	DZA65_RS00440	0.19	-1.2
106,981	-	DZA65_RS00440	0.21	+0.9
107,192	+	DZA65_RS00440	0.53	+0.2
107,193	-	DZA65_RS00440	0.53	-0.1
107,193	-	DZA65_RS00440	0.53	+0.3
107,195	+	DZA65_RS00440	0.54	+0.1
107,195	+	DZA65_RS00440	0.54	+2.7
107,196	-	DZA65_RS00440	0.54	+1.4
107,210	+	DZA65_RS00440	0.56	-2.2
107,274	+	DZA65_RS00440	0.66	-1.1
107,309	+	DZA65_RS00440	0.71	-0.8
107,309	+	DZA65_RS00440	0.71	-1.7
107,310	-	DZA65_RS00440	0.71	+0.7
107,403	-	DZA65_RS00440	0.86	-1.4
107,403	-	DZA65_RS00440	0.86	-1.9
107,546	+			-1.4
107,546	+			-0.1
107,547	-			+1.2
107,573	+			+0.9
107,574	-			-0.7
107,636	+			-1.2
107,636	+			-1.4
107,636	+			+0.1
107,637	-			+0.4
107,637	-			+1.2
107,637	-			+0.8
107,637	-			+1.2
107,637	-			-0.4
107,637	-			+0.5
107,637	-			-0.7
107,637	-			-1.4
107,637	-			+0.6
107,637	-			+0.9
107,688	+			+0.2
107,688	+			-0.9
107,688	+			-1.2
107,689	-			-0.2
107,689	-			+0.7
107,689	-			+0.4
107,689	-			-1.1
107,689	-			+1.4
107,689	-			-0.1
107,689	-			-0.8
107,689	-			-0.7
107,691	+			+0.0
107,691	+			-0.8
107,691	+			-0.7
107,691	+			+0.4
107,691	+			-0.5
107,691	+			-0.4
107,691	+			-1.4
107,691	+			-0.7
107,691	+			+0.2
107,691	+			+0.7
107,691	+			+0.9
107,691	+			+0.2
107,691	+			+0.5
107,691	+			+0.3
107,691	+			+0.1
107,692	-			+0.1
107,692	-			+1.1
107,692	-			+0.1
107,692	-			-0.9
107,692	-			+1.9
107,692	-			+0.3
107,692	-			-0.5
107,692	-			+0.3
107,692	-			-0.1
107,692	-			-0.5
107,692	-			-0.2
107,692	-			-0.2
107,692	-			-0.3
107,697	+			-1.1
107,697	+			-0.1
107,698	-			-0.1
107,698	-			+0.2
107,702	+			+0.9
107,702	+			+0.1
107,702	+			-1.1
107,702	+			+3.2
107,702	+			+0.2
107,702	+			-1.1
107,702	+			+0.3
107,702	+			-0.3
107,702	+			+2.7
107,702	+			+0.3
107,703	-			-1.7
107,703	-			-2.1
107,703	-			+0.2
107,703	-			+0.2
107,703	-			+0.7
107,703	-			-0.8
107,703	-			-2.4
107,703	-			-1.7
107,703	-			-1.1
107,703	-			-0.7
107,703	-			-0.1
107,703	-			+1.7
107,703	-			-0.4
107,703	-			-0.5
107,703	-			+0.4
107,706	+			-1.0
107,742	-			+0.8
107,752	-			-0.8
107,755	+			+0.7
107,755	+			+0.0
107,755	+			+1.2
107,755	+			+0.7
107,755	+			-0.1
107,755	+			-1.7
107,756	-			-0.7
107,756	-			+0.5

Or see this region's nucleotide sequence