Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00215

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00210 and DZA65_RS00215 are separated by 144 nucleotidesDZA65_RS00215 and DZA65_RS00220 are separated by 9 nucleotides DZA65_RS00210: DZA65_RS00210 - sulfite exporter TauE/SafE family protein, at 48,019 to 48,825 _RS00210 DZA65_RS00215: DZA65_RS00215 - glycine--tRNA ligase subunit alpha, at 48,970 to 49,884 _RS00215 DZA65_RS00220: DZA65_RS00220 - glycine--tRNA ligase subunit beta, at 49,894 to 51,978 _RS00220 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 47.972 kb on + strandat 47.972 kb on + strandat 47.972 kb on + strandat 47.973 kb on - strandat 47.973 kb on - strandat 47.998 kb on + strandat 47.998 kb on + strandat 47.999 kb on - strandat 47.999 kb on - strandat 47.999 kb on - strandat 47.999 kb on - strandat 48.000 kb on + strandat 48.001 kb on - strandat 48.001 kb on - strandat 48.017 kb on + strandat 48.017 kb on + strandat 48.018 kb on - strandat 48.018 kb on - strandat 48.018 kb on - strandat 48.043 kb on + strandat 48.044 kb on - strandat 48.044 kb on - strandat 48.072 kb on + strandat 48.072 kb on + strandat 48.073 kb on - strandat 48.073 kb on - strandat 48.073 kb on - strandat 48.084 kb on - strandat 48.084 kb on - strandat 48.090 kb on + strandat 48.105 kb on + strand, within DZA65_RS00210at 48.105 kb on + strand, within DZA65_RS00210at 48.108 kb on + strand, within DZA65_RS00210at 48.108 kb on + strand, within DZA65_RS00210at 48.108 kb on + strand, within DZA65_RS00210at 48.108 kb on + strand, within DZA65_RS00210at 48.108 kb on + strand, within DZA65_RS00210at 48.109 kb on - strand, within DZA65_RS00210at 48.183 kb on + strand, within DZA65_RS00210at 48.183 kb on + strand, within DZA65_RS00210at 48.183 kb on + strand, within DZA65_RS00210at 48.183 kb on + strand, within DZA65_RS00210at 48.183 kb on + strand, within DZA65_RS00210at 48.184 kb on - strand, within DZA65_RS00210at 48.228 kb on + strand, within DZA65_RS00210at 48.229 kb on - strand, within DZA65_RS00210at 48.373 kb on + strand, within DZA65_RS00210at 48.373 kb on + strand, within DZA65_RS00210at 48.373 kb on + strand, within DZA65_RS00210at 48.373 kb on + strand, within DZA65_RS00210at 48.373 kb on + strand, within DZA65_RS00210at 48.373 kb on + strand, within DZA65_RS00210at 48.373 kb on + strand, within DZA65_RS00210at 48.374 kb on - strand, within DZA65_RS00210at 48.374 kb on - strand, within DZA65_RS00210at 48.374 kb on - strand, within DZA65_RS00210at 48.374 kb on - strand, within DZA65_RS00210at 48.374 kb on - strand, within DZA65_RS00210at 48.374 kb on - strand, within DZA65_RS00210at 48.374 kb on - strand, within DZA65_RS00210at 48.607 kb on + strand, within DZA65_RS00210at 48.608 kb on - strand, within DZA65_RS00210at 48.608 kb on - strand, within DZA65_RS00210at 48.608 kb on - strand, within DZA65_RS00210at 48.608 kb on - strand, within DZA65_RS00210at 48.608 kb on - strand, within DZA65_RS00210at 48.608 kb on - strand, within DZA65_RS00210at 48.658 kb on + strand, within DZA65_RS00210at 48.658 kb on + strand, within DZA65_RS00210at 48.658 kb on + strand, within DZA65_RS00210at 48.658 kb on + strand, within DZA65_RS00210at 48.658 kb on + strand, within DZA65_RS00210at 48.658 kb on + strand, within DZA65_RS00210at 48.659 kb on - strand, within DZA65_RS00210at 48.659 kb on - strand, within DZA65_RS00210at 48.659 kb on - strand, within DZA65_RS00210at 48.776 kb on + strandat 48.776 kb on + strandat 48.776 kb on + strandat 48.858 kb on + strandat 48.858 kb on + strandat 48.858 kb on + strandat 48.858 kb on + strandat 48.859 kb on - strandat 48.859 kb on - strandat 48.865 kb on + strandat 48.866 kb on - strandat 48.899 kb on + strandat 48.899 kb on + strandat 48.899 kb on + strandat 48.899 kb on + strandat 48.899 kb on + strandat 48.899 kb on + strandat 48.899 kb on + strandat 48.899 kb on + strandat 48.899 kb on + strandat 48.899 kb on + strandat 48.899 kb on + strandat 48.900 kb on - strandat 48.900 kb on - strandat 48.900 kb on - strandat 48.900 kb on - strandat 48.900 kb on - strandat 48.900 kb on - strandat 48.901 kb on + strandat 48.901 kb on + strandat 48.901 kb on + strandat 48.901 kb on + strandat 48.901 kb on + strandat 48.901 kb on + strandat 48.901 kb on + strandat 48.919 kb on + strandat 48.919 kb on + strandat 48.921 kb on + strandat 48.921 kb on + strandat 48.938 kb on + strandat 48.938 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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47,972 + -0.5
47,972 + -0.8
47,972 + -0.1
47,973 - -0.9
47,973 - -1.7
47,998 + -2.2
47,998 + -0.5
47,999 - -0.1
47,999 - +1.9
47,999 - -0.1
47,999 - +0.5
48,000 + -0.4
48,001 - -0.6
48,001 - +0.0
48,017 + +0.0
48,017 + -0.1
48,018 - -1.1
48,018 - -2.2
48,018 - -1.1
48,043 + +1.5
48,044 - -0.5
48,044 - -1.1
48,072 + +1.3
48,072 + +0.6
48,073 - +0.6
48,073 - -2.2
48,073 - -0.3
48,084 - -0.4
48,084 - +0.1
48,090 + +0.1
48,105 + DZA65_RS00210 0.11 -1.5
48,105 + DZA65_RS00210 0.11 -0.3
48,108 + DZA65_RS00210 0.11 -0.5
48,108 + DZA65_RS00210 0.11 +1.2
48,108 + DZA65_RS00210 0.11 +1.9
48,108 + DZA65_RS00210 0.11 +0.4
48,108 + DZA65_RS00210 0.11 +0.5
48,109 - DZA65_RS00210 0.11 -1.7
48,183 + DZA65_RS00210 0.20 +0.1
48,183 + DZA65_RS00210 0.20 +0.3
48,183 + DZA65_RS00210 0.20 -2.1
48,183 + DZA65_RS00210 0.20 +0.4
48,183 + DZA65_RS00210 0.20 -1.9
48,184 - DZA65_RS00210 0.20 -1.4
48,228 + DZA65_RS00210 0.26 -0.8
48,229 - DZA65_RS00210 0.26 +0.9
48,373 + DZA65_RS00210 0.44 -0.5
48,373 + DZA65_RS00210 0.44 -1.4
48,373 + DZA65_RS00210 0.44 -3.4
48,373 + DZA65_RS00210 0.44 +0.2
48,373 + DZA65_RS00210 0.44 +0.2
48,373 + DZA65_RS00210 0.44 -0.8
48,373 + DZA65_RS00210 0.44 +0.3
48,374 - DZA65_RS00210 0.44 +0.2
48,374 - DZA65_RS00210 0.44 +1.5
48,374 - DZA65_RS00210 0.44 -0.8
48,374 - DZA65_RS00210 0.44 +0.1
48,374 - DZA65_RS00210 0.44 +0.2
48,374 - DZA65_RS00210 0.44 -0.9
48,374 - DZA65_RS00210 0.44 -0.1
48,607 + DZA65_RS00210 0.73 +0.2
48,608 - DZA65_RS00210 0.73 -1.6
48,608 - DZA65_RS00210 0.73 +0.6
48,608 - DZA65_RS00210 0.73 +1.9
48,608 - DZA65_RS00210 0.73 -0.4
48,608 - DZA65_RS00210 0.73 -0.1
48,608 - DZA65_RS00210 0.73 -1.7
48,658 + DZA65_RS00210 0.79 -1.0
48,658 + DZA65_RS00210 0.79 +0.5
48,658 + DZA65_RS00210 0.79 +0.7
48,658 + DZA65_RS00210 0.79 -2.2
48,658 + DZA65_RS00210 0.79 +0.5
48,658 + DZA65_RS00210 0.79 +0.2
48,659 - DZA65_RS00210 0.79 -2.4
48,659 - DZA65_RS00210 0.79 +0.9
48,659 - DZA65_RS00210 0.79 -0.7
48,776 + -1.7
48,776 + -0.6
48,776 + +1.3
48,858 + -0.1
48,858 + -1.1
48,858 + -0.7
48,858 + +0.2
48,859 - +0.2
48,859 - -0.1
48,865 + +0.2
48,866 - +0.3
48,899 + -0.8
48,899 + -0.0
48,899 + -0.5
48,899 + +2.4
48,899 + -0.7
48,899 + -2.4
48,899 + +1.4
48,899 + -0.3
48,899 + +0.6
48,899 + -0.4
48,899 + +0.1
48,900 - -0.1
48,900 - +0.2
48,900 - +0.1
48,900 - +1.2
48,900 - +0.3
48,900 - -0.3
48,901 + -0.7
48,901 + -1.1
48,901 + +1.2
48,901 + -0.8
48,901 + +1.6
48,901 + -0.2
48,901 + -1.7
48,919 + -0.1
48,919 + +0.6
48,921 + +0.3
48,921 + -0.5
48,938 + -0.5
48,938 + +0.6

Or see this region's nucleotide sequence