Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19840 and DZA65_RS19845 are separated by 427 nucleotides DZA65_RS19845 and DZA65_RS19850 overlap by 4 nucleotides DZA65_RS19850 and DZA65_RS19855 are separated by 46 nucleotides
DZA65_RS19840: DZA65_RS19840 - LLM class flavin-dependent oxidoreductase, at 4,292,606 to 4,293,607
_RS19840
DZA65_RS19845: DZA65_RS19845 - LLM class flavin-dependent oxidoreductase, at 4,294,035 to 4,295,411
_RS19845
DZA65_RS19850: DZA65_RS19850 - ABC transporter substrate-binding protein, at 4,295,408 to 4,296,328
_RS19850
DZA65_RS19855: DZA65_RS19855 - ABC transporter substrate-binding protein, at 4,296,375 to 4,297,322
_RS19855
Position (kb) 4294
4295
4296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4293.155 kb on - strand, within DZA65_RS19840 at 4293.155 kb on - strand, within DZA65_RS19840 at 4293.198 kb on - strand, within DZA65_RS19840 at 4293.198 kb on - strand, within DZA65_RS19840 at 4293.198 kb on - strand, within DZA65_RS19840 at 4293.198 kb on - strand, within DZA65_RS19840 at 4293.198 kb on - strand, within DZA65_RS19840 at 4293.202 kb on + strand, within DZA65_RS19840 at 4293.203 kb on - strand, within DZA65_RS19840 at 4293.203 kb on - strand, within DZA65_RS19840 at 4293.323 kb on + strand, within DZA65_RS19840 at 4293.323 kb on + strand, within DZA65_RS19840 at 4293.323 kb on + strand, within DZA65_RS19840 at 4293.323 kb on + strand, within DZA65_RS19840 at 4293.324 kb on - strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.326 kb on + strand, within DZA65_RS19840 at 4293.327 kb on - strand, within DZA65_RS19840 at 4293.327 kb on - strand, within DZA65_RS19840 at 4293.327 kb on - strand, within DZA65_RS19840 at 4293.327 kb on - strand, within DZA65_RS19840 at 4293.327 kb on - strand, within DZA65_RS19840 at 4293.327 kb on - strand, within DZA65_RS19840 at 4293.327 kb on - strand, within DZA65_RS19840 at 4293.327 kb on - strand, within DZA65_RS19840 at 4293.327 kb on - strand, within DZA65_RS19840 at 4293.327 kb on - strand, within DZA65_RS19840 at 4293.349 kb on + strand, within DZA65_RS19840 at 4293.349 kb on + strand, within DZA65_RS19840 at 4293.349 kb on + strand, within DZA65_RS19840 at 4293.349 kb on + strand, within DZA65_RS19840 at 4293.349 kb on + strand, within DZA65_RS19840 at 4293.349 kb on + strand, within DZA65_RS19840 at 4293.349 kb on + strand, within DZA65_RS19840 at 4293.349 kb on + strand, within DZA65_RS19840 at 4293.349 kb on + strand, within DZA65_RS19840 at 4293.349 kb on + strand, within DZA65_RS19840 at 4293.350 kb on - strand, within DZA65_RS19840 at 4293.350 kb on - strand, within DZA65_RS19840 at 4293.350 kb on - strand, within DZA65_RS19840 at 4293.351 kb on + strand, within DZA65_RS19840 at 4293.351 kb on + strand, within DZA65_RS19840 at 4293.351 kb on + strand, within DZA65_RS19840 at 4293.352 kb on - strand, within DZA65_RS19840 at 4293.352 kb on - strand, within DZA65_RS19840 at 4293.352 kb on - strand, within DZA65_RS19840 at 4293.352 kb on - strand, within DZA65_RS19840 at 4293.360 kb on + strand, within DZA65_RS19840 at 4293.361 kb on - strand, within DZA65_RS19840 at 4293.368 kb on + strand, within DZA65_RS19840 at 4293.368 kb on + strand, within DZA65_RS19840 at 4293.368 kb on + strand, within DZA65_RS19840 at 4293.368 kb on + strand, within DZA65_RS19840 at 4293.368 kb on + strand, within DZA65_RS19840 at 4293.368 kb on + strand at 4293.368 kb on + strand, within DZA65_RS19840 at 4293.369 kb on - strand, within DZA65_RS19840 at 4293.369 kb on - strand, within DZA65_RS19840 at 4293.369 kb on - strand, within DZA65_RS19840 at 4293.495 kb on + strand, within DZA65_RS19840 at 4293.495 kb on + strand, within DZA65_RS19840 at 4293.496 kb on - strand, within DZA65_RS19840 at 4293.496 kb on - strand, within DZA65_RS19840 at 4293.601 kb on - strand at 4293.607 kb on + strand at 4293.607 kb on + strand at 4293.608 kb on - strand at 4293.609 kb on + strand at 4293.610 kb on - strand at 4293.610 kb on - strand at 4293.645 kb on + strand at 4293.646 kb on - strand at 4293.653 kb on + strand at 4293.690 kb on + strand at 4293.690 kb on + strand at 4293.694 kb on - strand at 4293.745 kb on + strand at 4293.750 kb on - strand at 4293.753 kb on + strand at 4293.754 kb on - strand at 4293.766 kb on + strand at 4293.795 kb on - strand at 4293.801 kb on - strand at 4293.876 kb on - strand at 4293.893 kb on + strand at 4293.893 kb on + strand at 4293.902 kb on + strand at 4293.917 kb on - strand at 4294.021 kb on + strand at 4294.022 kb on - strand at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.248 kb on + strand, within DZA65_RS19845 at 4294.249 kb on - strand, within DZA65_RS19845 at 4294.249 kb on - strand, within DZA65_RS19845 at 4294.249 kb on - strand, within DZA65_RS19845 at 4294.249 kb on - strand, within DZA65_RS19845 at 4294.249 kb on - strand, within DZA65_RS19845 at 4294.365 kb on + strand, within DZA65_RS19845 at 4294.365 kb on + strand, within DZA65_RS19845 at 4294.365 kb on + strand, within DZA65_RS19845 at 4294.365 kb on + strand, within DZA65_RS19845 at 4294.366 kb on - strand, within DZA65_RS19845 at 4294.366 kb on - strand, within DZA65_RS19845 at 4294.366 kb on - strand, within DZA65_RS19845 at 4294.366 kb on - strand, within DZA65_RS19845 at 4294.685 kb on + strand, within DZA65_RS19845 at 4294.706 kb on + strand, within DZA65_RS19845 at 4294.706 kb on + strand, within DZA65_RS19845 at 4294.706 kb on + strand, within DZA65_RS19845 at 4294.707 kb on - strand, within DZA65_RS19845 at 4294.707 kb on - strand, within DZA65_RS19845 at 4294.707 kb on - strand, within DZA65_RS19845 at 4294.821 kb on - strand, within DZA65_RS19845 at 4294.866 kb on - strand, within DZA65_RS19845 at 4294.866 kb on - strand, within DZA65_RS19845 at 4294.866 kb on - strand, within DZA65_RS19845 at 4294.923 kb on + strand, within DZA65_RS19845 at 4294.923 kb on + strand, within DZA65_RS19845 at 4294.968 kb on + strand, within DZA65_RS19845 at 4294.968 kb on + strand, within DZA65_RS19845 at 4294.968 kb on + strand, within DZA65_RS19845 at 4294.969 kb on - strand, within DZA65_RS19845 at 4294.969 kb on - strand, within DZA65_RS19845 at 4294.981 kb on - strand, within DZA65_RS19845 at 4294.992 kb on + strand, within DZA65_RS19845 at 4294.992 kb on + strand, within DZA65_RS19845 at 4294.992 kb on + strand, within DZA65_RS19845 at 4294.993 kb on - strand, within DZA65_RS19845 at 4294.993 kb on - strand, within DZA65_RS19845 at 4294.993 kb on - strand, within DZA65_RS19845 at 4295.081 kb on + strand, within DZA65_RS19845 at 4295.081 kb on + strand, within DZA65_RS19845 at 4295.082 kb on - strand, within DZA65_RS19845 at 4295.082 kb on - strand, within DZA65_RS19845 at 4295.138 kb on + strand, within DZA65_RS19845 at 4295.139 kb on - strand, within DZA65_RS19845 at 4295.606 kb on - strand, within DZA65_RS19850 at 4295.795 kb on - strand, within DZA65_RS19850 at 4295.851 kb on + strand, within DZA65_RS19850 at 4295.865 kb on - strand, within DZA65_RS19850 at 4295.865 kb on - strand, within DZA65_RS19850 at 4295.865 kb on - strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.020 kb on + strand, within DZA65_RS19850 at 4296.021 kb on - strand at 4296.021 kb on - strand, within DZA65_RS19850 at 4296.021 kb on - strand, within DZA65_RS19850 at 4296.021 kb on - strand, within DZA65_RS19850 at 4296.021 kb on - strand, within DZA65_RS19850 at 4296.021 kb on - strand, within DZA65_RS19850 at 4296.021 kb on - strand, within DZA65_RS19850 at 4296.021 kb on - strand, within DZA65_RS19850 at 4296.104 kb on + strand, within DZA65_RS19850 at 4296.105 kb on - strand, within DZA65_RS19850 at 4296.246 kb on - strand at 4296.304 kb on + strand at 4296.304 kb on + strand at 4296.326 kb on + strand at 4296.327 kb on - strand at 4296.327 kb on - strand at 4296.356 kb on + strand at 4296.356 kb on + strand at 4296.357 kb on - strand at 4296.369 kb on + strand at 4296.369 kb on + strand at 4296.369 kb on + strand at 4296.369 kb on + strand at 4296.369 kb on + strand at 4296.369 kb on + strand at 4296.369 kb on + strand at 4296.369 kb on + strand at 4296.369 kb on + strand at 4296.369 kb on + strand at 4296.370 kb on - strand at 4296.370 kb on - strand at 4296.370 kb on - strand at 4296.370 kb on - strand at 4296.370 kb on - strand at 4296.370 kb on - strand at 4296.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,293,155 - DZA65_RS19840 0.55 +0.1 4,293,155 - DZA65_RS19840 0.55 +0.5 4,293,198 - DZA65_RS19840 0.59 -0.3 4,293,198 - DZA65_RS19840 0.59 +0.2 4,293,198 - DZA65_RS19840 0.59 -1.5 4,293,198 - DZA65_RS19840 0.59 -0.5 4,293,198 - DZA65_RS19840 0.59 +0.5 4,293,202 + DZA65_RS19840 0.59 +0.3 4,293,203 - DZA65_RS19840 0.60 -1.6 4,293,203 - DZA65_RS19840 0.60 -0.6 4,293,323 + DZA65_RS19840 0.72 +0.1 4,293,323 + DZA65_RS19840 0.72 -0.4 4,293,323 + DZA65_RS19840 0.72 +0.4 4,293,323 + DZA65_RS19840 0.72 -0.4 4,293,324 - DZA65_RS19840 0.72 +0.5 4,293,326 + DZA65_RS19840 0.72 +0.4 4,293,326 + DZA65_RS19840 0.72 +0.4 4,293,326 + DZA65_RS19840 0.72 +0.7 4,293,326 + DZA65_RS19840 0.72 -0.7 4,293,326 + DZA65_RS19840 0.72 +0.3 4,293,326 + DZA65_RS19840 0.72 -0.9 4,293,326 + DZA65_RS19840 0.72 -0.4 4,293,326 + DZA65_RS19840 0.72 +0.7 4,293,326 + DZA65_RS19840 0.72 -1.5 4,293,326 + DZA65_RS19840 0.72 -0.1 4,293,326 + DZA65_RS19840 0.72 +1.3 4,293,327 - DZA65_RS19840 0.72 -2.6 4,293,327 - DZA65_RS19840 0.72 +0.2 4,293,327 - DZA65_RS19840 0.72 -0.0 4,293,327 - DZA65_RS19840 0.72 +1.3 4,293,327 - DZA65_RS19840 0.72 -0.6 4,293,327 - DZA65_RS19840 0.72 +0.4 4,293,327 - DZA65_RS19840 0.72 +1.7 4,293,327 - DZA65_RS19840 0.72 +0.4 4,293,327 - DZA65_RS19840 0.72 +0.5 4,293,327 - DZA65_RS19840 0.72 +1.0 4,293,349 + DZA65_RS19840 0.74 -0.1 4,293,349 + DZA65_RS19840 0.74 +1.0 4,293,349 + DZA65_RS19840 0.74 +0.7 4,293,349 + DZA65_RS19840 0.74 -0.4 4,293,349 + DZA65_RS19840 0.74 +0.3 4,293,349 + DZA65_RS19840 0.74 +0.3 4,293,349 + DZA65_RS19840 0.74 -0.0 4,293,349 + DZA65_RS19840 0.74 +0.7 4,293,349 + DZA65_RS19840 0.74 +0.3 4,293,349 + DZA65_RS19840 0.74 +0.1 4,293,350 - DZA65_RS19840 0.74 +0.4 4,293,350 - DZA65_RS19840 0.74 -0.1 4,293,350 - DZA65_RS19840 0.74 +0.3 4,293,351 + DZA65_RS19840 0.74 +1.0 4,293,351 + DZA65_RS19840 0.74 +0.4 4,293,351 + DZA65_RS19840 0.74 -0.5 4,293,352 - DZA65_RS19840 0.74 +1.2 4,293,352 - DZA65_RS19840 0.74 +0.7 4,293,352 - DZA65_RS19840 0.74 -0.7 4,293,352 - DZA65_RS19840 0.74 -0.5 4,293,360 + DZA65_RS19840 0.75 -0.9 4,293,361 - DZA65_RS19840 0.75 +1.1 4,293,368 + DZA65_RS19840 0.76 -1.2 4,293,368 + DZA65_RS19840 0.76 +0.0 4,293,368 + DZA65_RS19840 0.76 +0.4 4,293,368 + DZA65_RS19840 0.76 -0.0 4,293,368 + DZA65_RS19840 0.76 +0.5 4,293,368 + -0.5 4,293,368 + DZA65_RS19840 0.76 +0.3 4,293,369 - DZA65_RS19840 0.76 +0.1 4,293,369 - DZA65_RS19840 0.76 -1.2 4,293,369 - DZA65_RS19840 0.76 -1.1 4,293,495 + DZA65_RS19840 0.89 +0.7 4,293,495 + DZA65_RS19840 0.89 -0.0 4,293,496 - DZA65_RS19840 0.89 -0.5 4,293,496 - DZA65_RS19840 0.89 +0.4 4,293,601 - -0.6 4,293,607 + +0.2 4,293,607 + +0.5 4,293,608 - +1.4 4,293,609 + +1.3 4,293,610 - +0.9 4,293,610 - -2.1 4,293,645 + -1.8 4,293,646 - -0.6 4,293,653 + -0.6 4,293,690 + -0.6 4,293,690 + +1.2 4,293,694 - -0.3 4,293,745 + -1.0 4,293,750 - -1.5 4,293,753 + -0.5 4,293,754 - +0.7 4,293,766 + +0.1 4,293,795 - +0.2 4,293,801 - +1.4 4,293,876 - -0.4 4,293,893 + +0.4 4,293,893 + -0.1 4,293,902 + +0.3 4,293,917 - -0.7 4,294,021 + +0.1 4,294,022 - -0.2 4,294,248 + DZA65_RS19845 0.15 +0.3 4,294,248 + DZA65_RS19845 0.15 +0.3 4,294,248 + DZA65_RS19845 0.15 +0.1 4,294,248 + DZA65_RS19845 0.15 -1.9 4,294,248 + DZA65_RS19845 0.15 +1.4 4,294,248 + DZA65_RS19845 0.15 +1.7 4,294,248 + DZA65_RS19845 0.15 -0.1 4,294,248 + DZA65_RS19845 0.15 -3.0 4,294,248 + DZA65_RS19845 0.15 +0.5 4,294,248 + DZA65_RS19845 0.15 -0.4 4,294,248 + DZA65_RS19845 0.15 +0.2 4,294,248 + DZA65_RS19845 0.15 +2.5 4,294,248 + DZA65_RS19845 0.15 -1.0 4,294,249 - DZA65_RS19845 0.16 -0.3 4,294,249 - DZA65_RS19845 0.16 +0.3 4,294,249 - DZA65_RS19845 0.16 +0.8 4,294,249 - DZA65_RS19845 0.16 +0.1 4,294,249 - DZA65_RS19845 0.16 -0.6 4,294,365 + DZA65_RS19845 0.24 +0.4 4,294,365 + DZA65_RS19845 0.24 -0.9 4,294,365 + DZA65_RS19845 0.24 -0.4 4,294,365 + DZA65_RS19845 0.24 -0.4 4,294,366 - DZA65_RS19845 0.24 +1.8 4,294,366 - DZA65_RS19845 0.24 +1.0 4,294,366 - DZA65_RS19845 0.24 -0.4 4,294,366 - DZA65_RS19845 0.24 -0.9 4,294,685 + DZA65_RS19845 0.47 -1.6 4,294,706 + DZA65_RS19845 0.49 +1.7 4,294,706 + DZA65_RS19845 0.49 -0.1 4,294,706 + DZA65_RS19845 0.49 -0.2 4,294,707 - DZA65_RS19845 0.49 -0.3 4,294,707 - DZA65_RS19845 0.49 +0.8 4,294,707 - DZA65_RS19845 0.49 -1.6 4,294,821 - DZA65_RS19845 0.57 -2.3 4,294,866 - DZA65_RS19845 0.60 +0.3 4,294,866 - DZA65_RS19845 0.60 -0.6 4,294,866 - DZA65_RS19845 0.60 +0.3 4,294,923 + DZA65_RS19845 0.64 +0.5 4,294,923 + DZA65_RS19845 0.64 +0.4 4,294,968 + DZA65_RS19845 0.68 +0.1 4,294,968 + DZA65_RS19845 0.68 +0.8 4,294,968 + DZA65_RS19845 0.68 -0.6 4,294,969 - DZA65_RS19845 0.68 +1.1 4,294,969 - DZA65_RS19845 0.68 -0.1 4,294,981 - DZA65_RS19845 0.69 +0.3 4,294,992 + DZA65_RS19845 0.69 -0.8 4,294,992 + DZA65_RS19845 0.69 +1.0 4,294,992 + DZA65_RS19845 0.69 +0.9 4,294,993 - DZA65_RS19845 0.70 +1.2 4,294,993 - DZA65_RS19845 0.70 +1.3 4,294,993 - DZA65_RS19845 0.70 -0.9 4,295,081 + DZA65_RS19845 0.76 +0.6 4,295,081 + DZA65_RS19845 0.76 +0.7 4,295,082 - DZA65_RS19845 0.76 -1.9 4,295,082 - DZA65_RS19845 0.76 +0.4 4,295,138 + DZA65_RS19845 0.80 -0.3 4,295,139 - DZA65_RS19845 0.80 -0.9 4,295,606 - DZA65_RS19850 0.21 -0.3 4,295,795 - DZA65_RS19850 0.42 -2.3 4,295,851 + DZA65_RS19850 0.48 +0.3 4,295,865 - DZA65_RS19850 0.50 +0.3 4,295,865 - DZA65_RS19850 0.50 +1.1 4,295,865 - DZA65_RS19850 0.50 -0.4 4,296,020 + DZA65_RS19850 0.66 +1.9 4,296,020 + DZA65_RS19850 0.66 +0.7 4,296,020 + DZA65_RS19850 0.66 +0.1 4,296,020 + DZA65_RS19850 0.66 +0.2 4,296,020 + DZA65_RS19850 0.66 -0.1 4,296,020 + DZA65_RS19850 0.66 -0.0 4,296,020 + DZA65_RS19850 0.66 +0.9 4,296,020 + DZA65_RS19850 0.66 -0.7 4,296,020 + DZA65_RS19850 0.66 +0.8 4,296,020 + DZA65_RS19850 0.66 -0.9 4,296,020 + DZA65_RS19850 0.66 -0.8 4,296,021 - +2.3 4,296,021 - DZA65_RS19850 0.67 -0.9 4,296,021 - DZA65_RS19850 0.67 -0.4 4,296,021 - DZA65_RS19850 0.67 -0.2 4,296,021 - DZA65_RS19850 0.67 +0.7 4,296,021 - DZA65_RS19850 0.67 -1.5 4,296,021 - DZA65_RS19850 0.67 -0.4 4,296,021 - DZA65_RS19850 0.67 +0.7 4,296,104 + DZA65_RS19850 0.76 +1.5 4,296,105 - DZA65_RS19850 0.76 -0.4 4,296,246 - +0.4 4,296,304 + +2.4 4,296,304 + +0.1 4,296,326 + -0.2 4,296,327 - -0.2 4,296,327 - -0.3 4,296,356 + +1.1 4,296,356 + -1.1 4,296,357 - -0.3 4,296,369 + -0.0 4,296,369 + +0.3 4,296,369 + +0.8 4,296,369 + -0.9 4,296,369 + -0.3 4,296,369 + -0.8 4,296,369 + -0.9 4,296,369 + -1.3 4,296,369 + -2.3 4,296,369 + -0.8 4,296,370 - +1.3 4,296,370 - -0.4 4,296,370 - -1.4 4,296,370 - -0.1 4,296,370 - -0.7 4,296,370 - +0.2 4,296,370 - -0.1
Or see this region's nucleotide sequence