Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS18740 and DZA65_RS18745 are separated by 57 nucleotides DZA65_RS18745 and DZA65_RS18750 are separated by 34 nucleotides DZA65_RS18750 and DZA65_RS18755 are separated by 194 nucleotides DZA65_RS18755 and DZA65_RS18760 are separated by 282 nucleotides
DZA65_RS18740: DZA65_RS18740 - single-stranded DNA-binding protein SSB1, at 4,043,761 to 4,044,309
_RS18740
DZA65_RS18745: DZA65_RS18745 - flavin reductase family protein, at 4,044,367 to 4,044,945
_RS18745
DZA65_RS18750: DZA65_RS18750 - hypothetical protein, at 4,044,980 to 4,045,279
_RS18750
DZA65_RS18755: DZA65_RS18755 - hypothetical protein, at 4,045,474 to 4,045,962
_RS18755
DZA65_RS18760: DZA65_RS18760 - DUF4255 domain-containing protein, at 4,046,245 to 4,046,832
_RS18760
Position (kb) 4044
4045
4046 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4044.363 kb on - strand at 4044.404 kb on + strand at 4044.404 kb on + strand at 4044.405 kb on - strand at 4044.407 kb on + strand at 4044.407 kb on + strand at 4044.407 kb on + strand at 4044.408 kb on - strand at 4044.408 kb on - strand at 4044.408 kb on - strand at 4044.408 kb on - strand at 4044.408 kb on - strand at 4044.408 kb on - strand at 4044.408 kb on - strand at 4044.484 kb on + strand, within DZA65_RS18745 at 4044.484 kb on + strand, within DZA65_RS18745 at 4044.484 kb on + strand, within DZA65_RS18745 at 4044.484 kb on + strand, within DZA65_RS18745 at 4044.484 kb on + strand, within DZA65_RS18745 at 4044.485 kb on - strand, within DZA65_RS18745 at 4044.533 kb on + strand, within DZA65_RS18745 at 4044.533 kb on + strand, within DZA65_RS18745 at 4044.533 kb on + strand, within DZA65_RS18745 at 4044.533 kb on + strand, within DZA65_RS18745 at 4044.533 kb on + strand, within DZA65_RS18745 at 4044.534 kb on - strand, within DZA65_RS18745 at 4044.534 kb on - strand, within DZA65_RS18745 at 4044.574 kb on + strand, within DZA65_RS18745 at 4044.574 kb on + strand, within DZA65_RS18745 at 4044.575 kb on - strand, within DZA65_RS18745 at 4044.737 kb on + strand, within DZA65_RS18745 at 4044.905 kb on + strand at 4044.939 kb on + strand at 4044.945 kb on + strand at 4044.946 kb on - strand at 4044.960 kb on + strand at 4044.981 kb on + strand at 4044.981 kb on + strand at 4044.981 kb on + strand at 4044.982 kb on - strand at 4044.982 kb on - strand at 4044.982 kb on - strand at 4044.982 kb on - strand at 4044.990 kb on + strand at 4044.990 kb on + strand at 4045.000 kb on + strand at 4045.000 kb on + strand at 4045.001 kb on - strand at 4045.001 kb on - strand at 4045.001 kb on - strand at 4045.073 kb on - strand, within DZA65_RS18750 at 4045.075 kb on + strand, within DZA65_RS18750 at 4045.075 kb on + strand, within DZA65_RS18750 at 4045.103 kb on + strand, within DZA65_RS18750 at 4045.103 kb on + strand, within DZA65_RS18750 at 4045.103 kb on + strand, within DZA65_RS18750 at 4045.103 kb on + strand, within DZA65_RS18750 at 4045.103 kb on + strand, within DZA65_RS18750 at 4045.104 kb on - strand, within DZA65_RS18750 at 4045.104 kb on - strand, within DZA65_RS18750 at 4045.104 kb on - strand, within DZA65_RS18750 at 4045.104 kb on - strand, within DZA65_RS18750 at 4045.201 kb on + strand, within DZA65_RS18750 at 4045.201 kb on + strand, within DZA65_RS18750 at 4045.204 kb on + strand, within DZA65_RS18750 at 4045.204 kb on + strand, within DZA65_RS18750 at 4045.204 kb on + strand, within DZA65_RS18750 at 4045.204 kb on + strand, within DZA65_RS18750 at 4045.204 kb on + strand, within DZA65_RS18750 at 4045.205 kb on - strand, within DZA65_RS18750 at 4045.205 kb on - strand, within DZA65_RS18750 at 4045.205 kb on - strand, within DZA65_RS18750 at 4045.205 kb on - strand, within DZA65_RS18750 at 4045.205 kb on - strand, within DZA65_RS18750 at 4045.205 kb on - strand, within DZA65_RS18750 at 4045.205 kb on - strand, within DZA65_RS18750 at 4045.205 kb on - strand, within DZA65_RS18750 at 4045.226 kb on + strand, within DZA65_RS18750 at 4045.226 kb on + strand, within DZA65_RS18750 at 4045.226 kb on + strand, within DZA65_RS18750 at 4045.229 kb on + strand, within DZA65_RS18750 at 4045.230 kb on - strand at 4045.265 kb on + strand at 4045.269 kb on - strand at 4045.272 kb on - strand at 4045.285 kb on - strand at 4045.285 kb on - strand at 4045.304 kb on - strand at 4045.326 kb on + strand at 4045.327 kb on - strand at 4045.327 kb on - strand at 4045.360 kb on - strand at 4045.408 kb on - strand at 4045.410 kb on + strand at 4045.411 kb on - strand at 4045.440 kb on - strand at 4045.446 kb on + strand at 4045.447 kb on - strand at 4045.447 kb on - strand at 4045.450 kb on - strand at 4045.455 kb on + strand at 4045.462 kb on + strand at 4045.463 kb on - strand at 4045.530 kb on - strand, within DZA65_RS18755 at 4045.555 kb on - strand, within DZA65_RS18755 at 4045.569 kb on + strand, within DZA65_RS18755 at 4045.569 kb on + strand, within DZA65_RS18755 at 4045.569 kb on + strand, within DZA65_RS18755 at 4045.570 kb on - strand, within DZA65_RS18755 at 4045.570 kb on - strand, within DZA65_RS18755 at 4045.587 kb on + strand, within DZA65_RS18755 at 4045.607 kb on - strand, within DZA65_RS18755 at 4045.629 kb on - strand, within DZA65_RS18755 at 4045.629 kb on - strand, within DZA65_RS18755 at 4045.629 kb on - strand, within DZA65_RS18755 at 4045.629 kb on - strand, within DZA65_RS18755 at 4045.755 kb on - strand, within DZA65_RS18755 at 4045.813 kb on - strand, within DZA65_RS18755 at 4045.813 kb on - strand, within DZA65_RS18755 at 4045.815 kb on - strand, within DZA65_RS18755 at 4045.815 kb on - strand, within DZA65_RS18755 at 4045.815 kb on - strand, within DZA65_RS18755 at 4045.815 kb on - strand, within DZA65_RS18755 at 4045.815 kb on - strand, within DZA65_RS18755 at 4045.815 kb on - strand, within DZA65_RS18755 at 4045.857 kb on - strand, within DZA65_RS18755 at 4046.002 kb on - strand at 4046.076 kb on - strand at 4046.175 kb on - strand at 4046.229 kb on + strand at 4046.230 kb on - strand at 4046.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,044,363 - +0.3 4,044,404 + -1.2 4,044,404 + +0.7 4,044,405 - +0.2 4,044,407 + -0.7 4,044,407 + +0.1 4,044,407 + -0.7 4,044,408 - +0.5 4,044,408 - -0.7 4,044,408 - -3.5 4,044,408 - -1.1 4,044,408 - +0.0 4,044,408 - +1.0 4,044,408 - -0.7 4,044,484 + DZA65_RS18745 0.20 +0.6 4,044,484 + DZA65_RS18745 0.20 +2.0 4,044,484 + DZA65_RS18745 0.20 +0.3 4,044,484 + DZA65_RS18745 0.20 +0.4 4,044,484 + DZA65_RS18745 0.20 +1.1 4,044,485 - DZA65_RS18745 0.20 +0.1 4,044,533 + DZA65_RS18745 0.29 +2.3 4,044,533 + DZA65_RS18745 0.29 -0.1 4,044,533 + DZA65_RS18745 0.29 -0.3 4,044,533 + DZA65_RS18745 0.29 +1.7 4,044,533 + DZA65_RS18745 0.29 -0.1 4,044,534 - DZA65_RS18745 0.29 +0.0 4,044,534 - DZA65_RS18745 0.29 +1.1 4,044,574 + DZA65_RS18745 0.36 -1.0 4,044,574 + DZA65_RS18745 0.36 -0.4 4,044,575 - DZA65_RS18745 0.36 +0.6 4,044,737 + DZA65_RS18745 0.64 +0.1 4,044,905 + -1.1 4,044,939 + +1.6 4,044,945 + +0.7 4,044,946 - +0.0 4,044,960 + +1.0 4,044,981 + +1.3 4,044,981 + -3.7 4,044,981 + +0.0 4,044,982 - +1.4 4,044,982 - +0.6 4,044,982 - +0.1 4,044,982 - -0.5 4,044,990 + -2.7 4,044,990 + -0.4 4,045,000 + -1.6 4,045,000 + -0.6 4,045,001 - -0.3 4,045,001 - +1.2 4,045,001 - -0.4 4,045,073 - DZA65_RS18750 0.31 +1.1 4,045,075 + DZA65_RS18750 0.32 -0.1 4,045,075 + DZA65_RS18750 0.32 +0.9 4,045,103 + DZA65_RS18750 0.41 +1.2 4,045,103 + DZA65_RS18750 0.41 +1.6 4,045,103 + DZA65_RS18750 0.41 +0.3 4,045,103 + DZA65_RS18750 0.41 +0.1 4,045,103 + DZA65_RS18750 0.41 +0.6 4,045,104 - DZA65_RS18750 0.41 -2.0 4,045,104 - DZA65_RS18750 0.41 +0.4 4,045,104 - DZA65_RS18750 0.41 +0.6 4,045,104 - DZA65_RS18750 0.41 -0.4 4,045,201 + DZA65_RS18750 0.74 -0.9 4,045,201 + DZA65_RS18750 0.74 -0.4 4,045,204 + DZA65_RS18750 0.75 -1.4 4,045,204 + DZA65_RS18750 0.75 -1.7 4,045,204 + DZA65_RS18750 0.75 +0.6 4,045,204 + DZA65_RS18750 0.75 +0.2 4,045,204 + DZA65_RS18750 0.75 +1.0 4,045,205 - DZA65_RS18750 0.75 -0.5 4,045,205 - DZA65_RS18750 0.75 +0.1 4,045,205 - DZA65_RS18750 0.75 -0.7 4,045,205 - DZA65_RS18750 0.75 -0.6 4,045,205 - DZA65_RS18750 0.75 +0.7 4,045,205 - DZA65_RS18750 0.75 +0.2 4,045,205 - DZA65_RS18750 0.75 +0.2 4,045,205 - DZA65_RS18750 0.75 -1.4 4,045,226 + DZA65_RS18750 0.82 -1.0 4,045,226 + DZA65_RS18750 0.82 +0.9 4,045,226 + DZA65_RS18750 0.82 +1.3 4,045,229 + DZA65_RS18750 0.83 +0.3 4,045,230 - +0.6 4,045,265 + -0.2 4,045,269 - +0.6 4,045,272 - -0.5 4,045,285 - +0.2 4,045,285 - -0.8 4,045,304 - +0.1 4,045,326 + +0.2 4,045,327 - +0.2 4,045,327 - +0.0 4,045,360 - +1.2 4,045,408 - +1.3 4,045,410 + +0.6 4,045,411 - -0.3 4,045,440 - +0.1 4,045,446 + +0.3 4,045,447 - -1.7 4,045,447 - +0.8 4,045,450 - -0.6 4,045,455 + -0.2 4,045,462 + -1.0 4,045,463 - +0.8 4,045,530 - DZA65_RS18755 0.11 +0.2 4,045,555 - DZA65_RS18755 0.17 +0.4 4,045,569 + DZA65_RS18755 0.19 -1.7 4,045,569 + DZA65_RS18755 0.19 +0.1 4,045,569 + DZA65_RS18755 0.19 +0.0 4,045,570 - DZA65_RS18755 0.20 +0.6 4,045,570 - DZA65_RS18755 0.20 +0.6 4,045,587 + DZA65_RS18755 0.23 +2.2 4,045,607 - DZA65_RS18755 0.27 +1.4 4,045,629 - DZA65_RS18755 0.32 +1.6 4,045,629 - DZA65_RS18755 0.32 +0.1 4,045,629 - DZA65_RS18755 0.32 -0.9 4,045,629 - DZA65_RS18755 0.32 +0.6 4,045,755 - DZA65_RS18755 0.57 +0.9 4,045,813 - DZA65_RS18755 0.69 +2.4 4,045,813 - DZA65_RS18755 0.69 +1.3 4,045,815 - DZA65_RS18755 0.70 -1.2 4,045,815 - DZA65_RS18755 0.70 +1.2 4,045,815 - DZA65_RS18755 0.70 +0.2 4,045,815 - DZA65_RS18755 0.70 +0.1 4,045,815 - DZA65_RS18755 0.70 -1.4 4,045,815 - DZA65_RS18755 0.70 -0.8 4,045,857 - DZA65_RS18755 0.78 +1.2 4,046,002 - +0.0 4,046,076 - -0.5 4,046,175 - -1.1 4,046,229 + +0.3 4,046,230 - +0.4 4,046,267 - +0.6
Or see this region's nucleotide sequence