Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15850

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,441,857	+		DZA65_RS15845	0.11	+0.7
3,441,857	+		DZA65_RS15845	0.11	-0.2
3,441,857	+		DZA65_RS15845	0.11	+0.4
3,441,857	+		DZA65_RS15845	0.11	-0.6
3,441,857	+		DZA65_RS15845	0.11	-0.8
3,441,858	-		DZA65_RS15845	0.11	+1.9
3,441,858	-		DZA65_RS15845	0.11	-0.4
3,441,858	-		DZA65_RS15845	0.11	+0.1
3,441,858	-		DZA65_RS15845	0.11	+0.8
3,441,858	-		DZA65_RS15845	0.11	+0.0
3,441,955	+		DZA65_RS15845	0.24	+0.0
3,441,955	+		DZA65_RS15845	0.24	+2.6
3,441,956	-		DZA65_RS15845	0.24	-0.1
3,441,978	+		DZA65_RS15845	0.27	+0.5
3,441,978	+		DZA65_RS15845	0.27	-2.5
3,441,978	+		DZA65_RS15845	0.27	+0.7
3,442,045	+		DZA65_RS15845	0.36	+0.0
3,442,045	+		DZA65_RS15845	0.36	+0.9
3,442,045	+		DZA65_RS15845	0.36	-2.2
3,442,045	+		DZA65_RS15845	0.36	-1.2
3,442,045	+		DZA65_RS15845	0.36	+0.9
3,442,046	-		DZA65_RS15845	0.36	-0.3
3,442,046	-		DZA65_RS15845	0.36	+0.1
3,442,046	-		DZA65_RS15845	0.36	-0.6
3,442,046	-		DZA65_RS15845	0.36	-0.3
3,442,048	+		DZA65_RS15845	0.36	+1.9
3,442,048	+		DZA65_RS15845	0.36	+0.4
3,442,049	-		DZA65_RS15845	0.36	-1.2
3,442,049	-		DZA65_RS15845	0.36	-0.3
3,442,049	-		DZA65_RS15845	0.36	-1.0
3,442,049	-		DZA65_RS15845	0.36	-0.5
3,442,049	-		DZA65_RS15845	0.36	-0.5
3,442,192	+		DZA65_RS15845	0.55	-0.6
3,442,193	-		DZA65_RS15845	0.55	+0.9
3,442,215	+		DZA65_RS15845	0.58	+0.1
3,442,219	+		DZA65_RS15845	0.58	-0.2
3,442,219	+		DZA65_RS15845	0.58	-0.9
3,442,219	+		DZA65_RS15845	0.58	+0.3
3,442,220	-		DZA65_RS15845	0.58	-1.1
3,442,245	+		DZA65_RS15845	0.62	-0.4
3,442,245	+		DZA65_RS15845	0.62	+0.3
3,442,245	+		DZA65_RS15845	0.62	-0.2
3,442,245	+		DZA65_RS15845	0.62	+1.0
3,442,246	-		DZA65_RS15845	0.62	-0.3
3,442,246	-		DZA65_RS15845	0.62	+0.5
3,442,246	-		DZA65_RS15845	0.62	+0.6
3,442,297	-		DZA65_RS15845	0.68	+0.4
3,442,297	-		DZA65_RS15845	0.68	-0.5
3,442,388	+		DZA65_RS15845	0.80	-2.2
3,442,388	+		DZA65_RS15845	0.80	+0.2
3,442,388	+		DZA65_RS15845	0.80	+0.5
3,442,388	+		DZA65_RS15845	0.80	+0.4
3,442,389	-		DZA65_RS15845	0.81	-0.6
3,442,389	-		DZA65_RS15845	0.81	-1.2
3,442,531	+				-0.4
3,442,532	-				+0.9
3,442,532	-				-0.8
3,442,552	+				+0.0
3,442,552	+				-0.8
3,442,553	-				-0.6
3,442,553	-				-0.4
3,442,553	-				+1.2
3,442,556	+				-0.7
3,442,557	-				-0.1
3,442,580	+				-2.0
3,442,580	+				-1.5
3,442,580	+				+0.3
3,442,580	+				+0.8
3,442,580	+				+0.8
3,442,581	-				+0.1
3,442,603	+				+0.4
3,442,603	+				-1.6
3,442,603	+				-0.6
3,442,604	-				+0.5
3,442,604	-				+1.8
3,442,604	-				-0.6
3,442,622	+				-0.6
3,442,623	-				-0.2
3,442,623	-				-0.2
3,442,631	+				-0.1
3,442,631	+				-0.0
3,442,632	-				-0.6
3,442,632	-				-0.1
3,442,633	+				+0.2
3,442,633	+				+0.8
3,442,634	-				+0.8
3,442,634	-				-0.8
3,442,634	-				+0.0
3,442,634	-				-2.5
3,442,658	-				+0.6
3,442,664	-				-1.6
3,442,670	+				+1.1
3,442,670	+				-0.6
3,442,726	+				+0.1
3,442,772	+				+1.4
3,442,772	+				+0.4
3,442,796	+				-0.5
3,442,797	-				-0.3
3,442,807	+				+1.4
3,442,807	+				+0.1
3,442,807	+				+0.4
3,442,808	-				-0.6
3,442,808	-				+0.2
3,442,896	+				+0.6
3,442,896	+				+0.5
3,442,896	+				+0.9
3,442,896	+				-1.5
3,442,896	+				-0.5
3,442,896	+				-0.6
3,442,896	+				-0.2
3,442,896	+				-0.0
3,442,896	+				-0.2
3,442,897	-				-0.8
3,442,897	-				-1.2
3,442,897	-				-0.2
3,442,919	+		DZA65_RS15850	0.12	-0.5
3,443,006	+		DZA65_RS15850	0.23	-0.1
3,443,007	-		DZA65_RS15850	0.23	+0.1
3,443,007	-		DZA65_RS15850	0.23	-0.4
3,443,007	-		DZA65_RS15850	0.23	+0.2
3,443,226	-		DZA65_RS15850	0.53	+0.7
3,443,226	-		DZA65_RS15850	0.53	-0.5
3,443,268	+		DZA65_RS15850	0.58	-0.5
3,443,268	+		DZA65_RS15850	0.58	+1.3
3,443,269	-		DZA65_RS15850	0.59	-2.5
3,443,287	+		DZA65_RS15850	0.61	-0.9
3,443,287	+		DZA65_RS15850	0.61	-0.1
3,443,305	-		DZA65_RS15850	0.63	+0.4
3,443,331	+		DZA65_RS15850	0.67	-1.0
3,443,370	+		DZA65_RS15850	0.72	+0.5
3,443,370	+		DZA65_RS15850	0.72	+0.2
3,443,370	+		DZA65_RS15850	0.72	+0.4
3,443,370	+		DZA65_RS15850	0.72	+2.7
3,443,370	+		DZA65_RS15850	0.72	+0.1
3,443,371	-		DZA65_RS15850	0.72	-0.7
3,443,371	-		DZA65_RS15850	0.72	-0.6
3,443,371	-		DZA65_RS15850	0.72	+0.4
3,443,371	-		DZA65_RS15850	0.72	+1.9
3,443,371	-		DZA65_RS15850	0.72	-3.0
3,443,561	-				+0.2
3,443,561	-				+0.0
3,443,561	-				-0.4
3,443,579	+				+0.5
3,443,579	+				-1.4
3,443,579	+				+0.6
3,443,579	+				+2.4
3,443,579	+				-3.7
3,443,579	+				+1.3
3,443,579	+				-2.5
3,443,580	-				-0.0
3,443,580	-				-0.6
3,443,580	-				+0.1
3,443,580	-				+0.2
3,443,580	-				-0.4
3,443,580	-				-0.7
3,443,580	-				-0.1
3,443,580	-				-0.3
3,443,820	+		DZA65_RS15855	0.17	-0.2
3,443,820	+		DZA65_RS15855	0.17	+1.1
3,443,820	+		DZA65_RS15855	0.17	+0.2
3,443,821	-		DZA65_RS15855	0.17	-2.0
3,443,861	-				+0.4
3,443,861	-		DZA65_RS15855	0.19	-0.1
3,443,930	-		DZA65_RS15855	0.24	+0.4
3,443,988	+		DZA65_RS15855	0.27	-1.6
3,443,988	+		DZA65_RS15855	0.27	-0.6
3,443,988	+		DZA65_RS15855	0.27	-2.0
3,443,988	+		DZA65_RS15855	0.27	+1.0
3,443,989	-		DZA65_RS15855	0.27	+0.5
3,443,989	-		DZA65_RS15855	0.27	-0.2
3,443,989	-		DZA65_RS15855	0.27	-2.0
3,443,989	-		DZA65_RS15855	0.27	+3.1
3,443,989	-		DZA65_RS15855	0.27	-0.6
3,444,331	+		DZA65_RS15855	0.49	-1.1
3,444,331	+		DZA65_RS15855	0.49	+0.4