Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15125

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,296,114	-		DZA65_RS15120	0.39	-1.8
3,296,180	+		DZA65_RS15120	0.43	-0.7
3,296,224	+		DZA65_RS15120	0.46	-0.2
3,296,225	-		DZA65_RS15120	0.46	+0.8
3,296,225	-		DZA65_RS15120	0.46	-0.4
3,296,225	-		DZA65_RS15120	0.46	+0.5
3,296,225	-		DZA65_RS15120	0.46	+0.3
3,296,225	-		DZA65_RS15120	0.46	-1.7
3,296,225	-		DZA65_RS15120	0.46	-1.3
3,296,225	-		DZA65_RS15120	0.46	-0.2
3,296,225	-		DZA65_RS15120	0.46	-1.1
3,296,225	-		DZA65_RS15120	0.46	+0.0
3,296,364	+		DZA65_RS15120	0.54	+0.9
3,296,364	+		DZA65_RS15120	0.54	-2.3
3,296,364	+		DZA65_RS15120	0.54	+0.5
3,296,364	+		DZA65_RS15120	0.54	+0.5
3,296,364	+		DZA65_RS15120	0.54	+1.6
3,296,364	+		DZA65_RS15120	0.54	+0.5
3,296,364	+		DZA65_RS15120	0.54	+0.9
3,296,364	+		DZA65_RS15120	0.54	-0.4
3,296,364	+		DZA65_RS15120	0.54	+2.4
3,296,364	+		DZA65_RS15120	0.54	+1.6
3,296,364	+		DZA65_RS15120	0.54	-2.7
3,296,365	-		DZA65_RS15120	0.54	-0.2
3,296,365	-		DZA65_RS15120	0.54	+0.4
3,296,365	-		DZA65_RS15120	0.54	+0.6
3,296,365	-		DZA65_RS15120	0.54	-0.6
3,296,365	-		DZA65_RS15120	0.54	-0.3
3,296,365	-		DZA65_RS15120	0.54	-2.1
3,296,365	-		DZA65_RS15120	0.54	+0.1
3,296,365	-		DZA65_RS15120	0.54	-0.5
3,296,365	-		DZA65_RS15120	0.54	+0.7
3,296,365	-		DZA65_RS15120	0.54	+0.5
3,296,365	-		DZA65_RS15120	0.54	+0.3
3,296,392	-		DZA65_RS15120	0.56	+0.3
3,296,442	+		DZA65_RS15120	0.59	+1.0
3,296,442	+		DZA65_RS15120	0.59	+0.8
3,296,463	+		DZA65_RS15120	0.61	-0.1
3,296,464	-		DZA65_RS15120	0.61	+1.5
3,296,464	-		DZA65_RS15120	0.61	+0.3
3,296,482	+		DZA65_RS15120	0.62	-1.3
3,296,482	+		DZA65_RS15120	0.62	+0.9
3,296,484	+		DZA65_RS15120	0.62	-1.2
3,296,485	-		DZA65_RS15120	0.62	+0.3
3,296,510	+		DZA65_RS15120	0.64	-0.3
3,296,511	-		DZA65_RS15120	0.64	+0.0
3,296,511	-		DZA65_RS15120	0.64	+0.9
3,296,627	-		DZA65_RS15120	0.71	-0.7
3,296,666	+		DZA65_RS15120	0.74	+0.3
3,296,666	+		DZA65_RS15120	0.74	-1.3
3,296,711	+		DZA65_RS15120	0.76	-0.5
3,296,711	+		DZA65_RS15120	0.76	+0.9
3,296,711	+		DZA65_RS15120	0.76	-2.1
3,296,712	-		DZA65_RS15120	0.76	-0.3
3,296,712	-		DZA65_RS15120	0.76	-1.1
3,296,809	+		DZA65_RS15120	0.83	-3.5
3,296,861	+		DZA65_RS15120	0.86	-0.7
3,296,861	+		DZA65_RS15120	0.86	-0.1
3,296,861	+		DZA65_RS15120	0.86	+1.3
3,296,862	-		DZA65_RS15120	0.86	-0.7
3,296,862	-		DZA65_RS15120	0.86	+0.7
3,296,884	+		DZA65_RS15120	0.87	+1.3
3,296,884	+		DZA65_RS15120	0.87	+0.0
3,296,884	+		DZA65_RS15120	0.87	+0.3
3,296,885	-		DZA65_RS15120	0.87	+0.1
3,296,915	-		DZA65_RS15120	0.89	-1.7
3,296,999	+				-0.8
3,296,999	+				+0.1
3,296,999	+				+1.1
3,296,999	+				-0.3
3,296,999	+				-1.5
3,296,999	+				-1.3
3,296,999	+				+0.1
3,296,999	+				-0.2
3,296,999	+				-0.1
3,296,999	+				+1.3
3,297,000	-				+0.3
3,297,000	-				-1.9
3,297,000	-				-1.6
3,297,000	-				+2.4
3,297,000	-				-0.6
3,297,000	-				+0.1
3,297,000	-				-1.0
3,297,000	-				+0.1
3,297,000	-				+1.5
3,297,071	+				+0.9
3,297,071	+				+0.0
3,297,071	+				-0.5
3,297,071	+				-0.9
3,297,071	+				+0.9
3,297,071	+				-0.4
3,297,071	+				-0.7
3,297,071	+				+0.1
3,297,071	+				+0.3
3,297,071	+				-1.4
3,297,072	-				-1.5
3,297,072	-				+0.6
3,297,072	-				-0.3
3,297,072	-				+1.6
3,297,072	-				-0.1
3,297,072	-				+2.1
3,297,072	-				+0.9
3,297,072	-				+0.9
3,297,072	-				+0.1
3,297,072	-				-0.7
3,297,072	-				+0.0
3,297,072	-				+0.3
3,297,072	-				+1.9
3,297,072	-				-0.7
3,297,084	+				-0.5
3,297,084	+				+0.0
3,297,084	+				+0.3
3,297,084	+				+0.4
3,297,085	-				+0.3
3,297,085	-				-0.2
3,297,085	-				+1.1
3,297,085	-				-0.5
3,297,085	-				+0.0
3,297,085	-				-1.7
3,297,085	-				-0.1
3,297,085	-				-2.3
3,297,188	-				+0.3
3,297,232	+				-0.7
3,297,232	+				+0.4
3,297,233	-				+0.5
3,297,233	-				-0.7
3,297,233	-				-0.1
3,297,233	-				-0.1
3,297,269	-		DZA65_RS15125	0.11	-0.3
3,297,269	-		DZA65_RS15125	0.11	-0.7
3,297,377	-		DZA65_RS15125	0.17	+1.4
3,297,495	+		DZA65_RS15125	0.24	+1.7
3,297,496	-		DZA65_RS15125	0.24	+0.3
3,297,496	-		DZA65_RS15125	0.24	-1.1
3,297,496	-		DZA65_RS15125	0.24	+0.0
3,297,629	-		DZA65_RS15125	0.32	+0.3
3,297,671	+		DZA65_RS15125	0.35	-0.7
3,297,671	+		DZA65_RS15125	0.35	-1.1
3,297,671	+		DZA65_RS15125	0.35	+0.2
3,297,671	+		DZA65_RS15125	0.35	-1.7
3,297,672	-		DZA65_RS15125	0.35	-0.5
3,297,672	-		DZA65_RS15125	0.35	+0.6
3,297,682	+		DZA65_RS15125	0.35	+2.5
3,297,682	+		DZA65_RS15125	0.35	-1.9
3,297,683	-		DZA65_RS15125	0.35	+0.3
3,297,683	-		DZA65_RS15125	0.35	+0.9
3,297,712	+		DZA65_RS15125	0.37	-0.7
3,297,737	+		DZA65_RS15125	0.39	-0.7
3,297,737	+		DZA65_RS15125	0.39	-0.3
3,297,737	+		DZA65_RS15125	0.39	+0.0
3,297,737	+		DZA65_RS15125	0.39	-1.7
3,297,737	+		DZA65_RS15125	0.39	-0.1
3,297,738	-		DZA65_RS15125	0.39	+1.0
3,297,738	-		DZA65_RS15125	0.39	-0.1
3,297,738	-		DZA65_RS15125	0.39	-2.3
3,297,811	+		DZA65_RS15125	0.43	+0.1
3,297,811	+		DZA65_RS15125	0.43	+0.9
3,297,859	+		DZA65_RS15125	0.46	+1.1
3,297,870	+		DZA65_RS15125	0.46	-1.5
3,297,871	-		DZA65_RS15125	0.46	+0.7
3,297,908	-		DZA65_RS15125	0.49	+0.3
3,297,946	+		DZA65_RS15125	0.51	+0.0
3,297,946	+		DZA65_RS15125	0.51	+1.1
3,297,946	+		DZA65_RS15125	0.51	-0.2
3,297,947	-				-1.3
3,297,947	-		DZA65_RS15125	0.51	+0.1
3,297,947	-		DZA65_RS15125	0.51	-1.0
3,297,947	-		DZA65_RS15125	0.51	+1.7
3,297,947	-		DZA65_RS15125	0.51	+0.7
3,297,947	-		DZA65_RS15125	0.51	+0.9
3,297,947	-		DZA65_RS15125	0.51	-2.7
3,297,947	-		DZA65_RS15125	0.51	-0.5
3,297,947	-		DZA65_RS15125	0.51	-0.7
3,298,029	+		DZA65_RS15125	0.56	+0.7
3,298,030	-		DZA65_RS15125	0.56	+0.9
3,298,050	+				+0.3
3,298,050	+		DZA65_RS15125	0.57	-1.5
3,298,050	+		DZA65_RS15125	0.57	-0.4
3,298,050	+		DZA65_RS15125	0.57	+0.8
3,298,050	+		DZA65_RS15125	0.57	-0.1
3,298,050	+		DZA65_RS15125	0.57	+0.1
3,298,051	-		DZA65_RS15125	0.57	-0.1
3,298,051	-		DZA65_RS15125	0.57	-0.2
3,298,051	-		DZA65_RS15125	0.57	+0.8
3,298,102	+		DZA65_RS15125	0.60	-0.8
3,298,102	+		DZA65_RS15125	0.60	+0.6
3,298,103	-		DZA65_RS15125	0.60	-0.1
3,298,103	-		DZA65_RS15125	0.60	-0.5
3,298,103	-		DZA65_RS15125	0.60	-2.1
3,298,111	+		DZA65_RS15125	0.61	+0.6
3,298,172	+		DZA65_RS15125	0.64	-0.1
3,298,335	+		DZA65_RS15125	0.74	+1.5
3,298,335	+		DZA65_RS15125	0.74	-0.3
3,298,335	+		DZA65_RS15125	0.74	+0.0
3,298,335	+		DZA65_RS15125	0.74	+0.8
3,298,336	-		DZA65_RS15125	0.74	-1.0
3,298,407	+		DZA65_RS15125	0.78	-0.1
3,298,407	+		DZA65_RS15125	0.78	+0.4
3,298,408	-		DZA65_RS15125	0.78	+1.0
3,298,441	+		DZA65_RS15125	0.80	-0.3
3,298,441	+		DZA65_RS15125	0.80	-1.7
3,298,441	+		DZA65_RS15125	0.80	+0.6
3,298,442	-		DZA65_RS15125	0.80	-0.8
3,298,442	-		DZA65_RS15125	0.80	-0.6
3,298,442	-		DZA65_RS15125	0.80	+0.5
3,298,442	-		DZA65_RS15125	0.80	-0.1
3,298,442	-		DZA65_RS15125	0.80	+0.1
3,298,445	+		DZA65_RS15125	0.80	+1.3
3,298,445	+		DZA65_RS15125	0.80	+0.2
3,298,445	+		DZA65_RS15125	0.80	-0.3
3,298,446	-		DZA65_RS15125	0.80	+0.4
3,298,446	-		DZA65_RS15125	0.80	-0.3
3,298,446	-		DZA65_RS15125	0.80	-0.3
3,298,446	-		DZA65_RS15125	0.80	-1.3
3,298,548	+		DZA65_RS15125	0.86	+0.3
3,298,548	+		DZA65_RS15125	0.86	+1.0
3,298,548	+		DZA65_RS15125	0.86	+0.5
3,298,548	+		DZA65_RS15125	0.86	+0.3
3,298,549	-		DZA65_RS15125	0.86	-0.2
3,298,549	-		DZA65_RS15125	0.86	+0.6
3,298,549	-		DZA65_RS15125	0.86	+1.3
3,298,549	-		DZA65_RS15125	0.86	+1.9
3,298,549	-		DZA65_RS15125	0.86	+2.1
3,298,549	-		DZA65_RS15125	0.86	-0.3
3,298,549	-		DZA65_RS15125	0.86	+0.4
3,298,549	-		DZA65_RS15125	0.86	-0.9
3,298,549	-		DZA65_RS15125	0.86	+0.1
3,298,552	+		DZA65_RS15125	0.87	-0.7
3,298,552	+		DZA65_RS15125	0.87	-0.0
3,298,552	+		DZA65_RS15125	0.87	+0.3
3,298,552	+		DZA65_RS15125	0.87	-1.6
3,298,552	+		DZA65_RS15125	0.87	-0.5
3,298,552	+		DZA65_RS15125	0.87	+0.2
3,298,552	+		DZA65_RS15125	0.87	+0.9
3,298,552	+		DZA65_RS15125	0.87	-0.4
3,298,552	+		DZA65_RS15125	0.87	-2.0
3,298,552	+		DZA65_RS15125	0.87	-0.2
3,298,552	+		DZA65_RS15125	0.87	-0.5
3,298,552	+		DZA65_RS15125	0.87	+1.1
3,298,552	+		DZA65_RS15125	0.87	+1.0
3,298,552	+		DZA65_RS15125	0.87	-0.3
3,298,552	+		DZA65_RS15125	0.87	+0.1
3,298,552	+		DZA65_RS15125	0.87	+0.5
3,298,552	+		DZA65_RS15125	0.87	-0.6
3,298,552	+		DZA65_RS15125	0.87	-0.1
3,298,553	-		DZA65_RS15125	0.87	+1.6
3,298,553	-		DZA65_RS15125	0.87	+0.6
3,298,553	-		DZA65_RS15125	0.87	-0.7
3,298,553	-		DZA65_RS15125	0.87	+0.2
3,298,553	-		DZA65_RS15125	0.87	+0.4
3,298,553	-		DZA65_RS15125	0.87	+1.3
3,298,553	-		DZA65_RS15125	0.87	-0.3
3,298,553	-		DZA65_RS15125	0.87	+0.4
3,298,553	-		DZA65_RS15125	0.87	+1.1
3,298,553	-		DZA65_RS15125	0.87	-0.2
3,298,553	-		DZA65_RS15125	0.87	-0.6
3,298,584	+		DZA65_RS15125	0.88	+0.4
3,298,584	+		DZA65_RS15125	0.88	-1.5
3,298,584	+		DZA65_RS15125	0.88	-2.0
3,298,584	+		DZA65_RS15125	0.88	+0.9
3,298,584	+		DZA65_RS15125	0.88	+0.3
3,298,585	-		DZA65_RS15125	0.88	+0.4
3,298,585	-		DZA65_RS15125	0.88	+0.2
3,298,585	-		DZA65_RS15125	0.88	-1.3
3,298,585	-		DZA65_RS15125	0.88	+0.1
3,298,585	-		DZA65_RS15125	0.88	+0.3
3,298,585	-		DZA65_RS15125	0.88	-0.9
3,298,596	+		DZA65_RS15125	0.89	-0.4
3,298,597	-		DZA65_RS15125	0.89	-0.3
3,298,597	-		DZA65_RS15125	0.89	+0.1
3,298,611	+				-0.7
3,298,611	+				-1.0
3,298,617	+				+0.3
3,298,618	-				+0.3
3,298,742	+				+0.3
3,298,743	-				-0.8
3,298,743	-				+0.4
3,298,782	+				+1.0
3,298,782	+				-2.3
3,298,782	+				-1.5
3,298,782	+				-1.0
3,298,783	-				+0.4
3,298,805	-		DZA65_RS15130	0.12	-0.0
3,298,816	+		DZA65_RS15130	0.17	-1.5
3,298,816	+		DZA65_RS15130	0.17	+0.0
3,298,816	+		DZA65_RS15130	0.17	-1.3
3,298,817	-		DZA65_RS15130	0.18	-0.4
3,298,817	-		DZA65_RS15130	0.18	+1.2
3,298,836	+		DZA65_RS15130	0.27	-0.3
3,298,836	+		DZA65_RS15130	0.27	-0.3
3,298,851	+		DZA65_RS15130	0.34	+1.1
3,298,852	-		DZA65_RS15130	0.35	+0.9
3,298,852	-		DZA65_RS15130	0.35	+1.4
3,298,852	-		DZA65_RS15130	0.35	-0.0
3,298,875	-		DZA65_RS15130	0.46	-0.5
3,298,875	-		DZA65_RS15130	0.46	-1.5
3,298,892	-		DZA65_RS15130	0.54	-2.0
3,298,905	+		DZA65_RS15130	0.61	+0.5
3,298,906	-		DZA65_RS15130	0.61	-0.6
3,298,906	-		DZA65_RS15130	0.61	-1.3
3,298,961	+		DZA65_RS15130	0.88	+1.0
3,298,961	+		DZA65_RS15130	0.88	-0.2
3,298,962	-		DZA65_RS15130	0.89	+0.1
3,298,962	-		DZA65_RS15130	0.89	-0.9
3,298,962	-		DZA65_RS15130	0.89	+0.3
3,298,962	-		DZA65_RS15130	0.89	+0.9
3,299,074	+		DZA65_RS15135	0.28	+1.1
3,299,074	+		DZA65_RS15135	0.28	+0.3
3,299,074	+		DZA65_RS15135	0.28	+1.7
3,299,074	+		DZA65_RS15135	0.28	+0.8
3,299,075	-		DZA65_RS15135	0.28	-0.3
3,299,201	+				+0.3
3,299,201	+				+0.9
3,299,201	+				-0.7
3,299,201	+				-0.1
3,299,202	-				+0.7
3,299,214	+				+0.1
3,299,215	-				-0.4
3,299,215	-				-2.0
3,299,315	+		DZA65_RS15140	0.22	+0.3
3,299,315	+		DZA65_RS15140	0.22	-0.2
3,299,315	+		DZA65_RS15140	0.22	+0.9
3,299,315	+		DZA65_RS15140	0.22	+0.4
3,299,315	+		DZA65_RS15140	0.22	+2.3
3,299,315	+		DZA65_RS15140	0.22	-0.7
3,299,315	+		DZA65_RS15140	0.22	+1.7
3,299,315	+		DZA65_RS15140	0.22	+2.0
3,299,315	+		DZA65_RS15140	0.22	+0.1
3,299,315	+		DZA65_RS15140	0.22	-1.2
3,299,315	+		DZA65_RS15140	0.22	-2.0
3,299,315	+		DZA65_RS15140	0.22	-2.3
3,299,316	-		DZA65_RS15140	0.22	+0.6
3,299,316	-		DZA65_RS15140	0.22	+1.3
3,299,316	-		DZA65_RS15140	0.22	-0.9
3,299,316	-		DZA65_RS15140	0.22	+0.1
3,299,316	-		DZA65_RS15140	0.22	+0.3
3,299,354	+		DZA65_RS15140	0.29	-0.0
3,299,355	-		DZA65_RS15140	0.30	+0.1
3,299,435	-		DZA65_RS15140	0.46	-0.3
3,299,473	-		DZA65_RS15140	0.53	+0.7
3,299,480	+		DZA65_RS15140	0.54	-0.7
3,299,492	+		DZA65_RS15140	0.57	+0.3
3,299,496	-		DZA65_RS15140	0.58	+1.0
3,299,662	+				-0.0
3,299,663	-				-0.1
3,299,663	-				-0.1
3,299,663	-				-0.4
3,299,664	+				-0.6
3,299,664	+				+0.9
3,299,664	+				+0.3
3,299,665	-				+0.0
3,299,665	-				-0.1
3,299,708	+				+1.3
3,299,708	+				+0.2
3,299,748	+		DZA65_RS15145	0.14	-1.4
3,299,748	+		DZA65_RS15145	0.14	-0.0
3,299,749	-		DZA65_RS15145	0.14	+0.6
3,299,749	-		DZA65_RS15145	0.14	+0.7
3,299,749	-		DZA65_RS15145	0.14	-0.0
3,299,749	-		DZA65_RS15145	0.14	+1.1