Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11895

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,539,371	+		DZA65_RS11890	0.34	+1.9
2,539,371	+		DZA65_RS11890	0.34	-3.0
2,539,378	+		DZA65_RS11890	0.35	-0.6
2,539,378	+		DZA65_RS11890	0.35	+1.3
2,539,378	+		DZA65_RS11890	0.35	-0.4
2,539,378	+		DZA65_RS11890	0.35	+1.1
2,539,378	+		DZA65_RS11890	0.35	+0.0
2,539,378	+		DZA65_RS11890	0.35	+1.9
2,539,378	+		DZA65_RS11890	0.35	+0.2
2,539,379	-		DZA65_RS11890	0.35	+0.2
2,539,379	-		DZA65_RS11890	0.35	-0.3
2,539,379	-		DZA65_RS11890	0.35	-0.4
2,539,379	-		DZA65_RS11890	0.35	+0.0
2,539,379	-		DZA65_RS11890	0.35	+0.0
2,539,379	-		DZA65_RS11890	0.35	-0.7
2,539,379	-		DZA65_RS11890	0.35	+0.2
2,539,379	-		DZA65_RS11890	0.35	-0.1
2,539,382	+		DZA65_RS11890	0.35	-1.0
2,539,383	-		DZA65_RS11890	0.35	-0.1
2,539,524	+		DZA65_RS11890	0.48	+0.3
2,539,524	+		DZA65_RS11890	0.48	-0.6
2,539,524	+		DZA65_RS11890	0.48	-1.1
2,539,524	+		DZA65_RS11890	0.48	-0.7
2,539,525	-		DZA65_RS11890	0.48	+0.2
2,539,525	-		DZA65_RS11890	0.48	-0.6
2,539,525	-		DZA65_RS11890	0.48	+0.0
2,539,526	+		DZA65_RS11890	0.48	-0.2
2,539,527	-		DZA65_RS11890	0.48	+1.0
2,539,527	-		DZA65_RS11890	0.48	-1.0
2,539,527	-		DZA65_RS11890	0.48	+0.2
2,539,527	-				+0.4
2,539,555	-		DZA65_RS11890	0.51	-0.2
2,539,578	+		DZA65_RS11890	0.53	+1.2
2,539,579	-		DZA65_RS11890	0.53	-1.3
2,539,579	-		DZA65_RS11890	0.53	-1.8
2,539,579	-		DZA65_RS11890	0.53	-0.2
2,539,635	+		DZA65_RS11890	0.58	+0.7
2,539,635	+		DZA65_RS11890	0.58	+0.0
2,539,635	+		DZA65_RS11890	0.58	-2.6
2,539,635	+		DZA65_RS11890	0.58	-0.3
2,539,635	+		DZA65_RS11890	0.58	-1.4
2,539,635	+		DZA65_RS11890	0.58	+1.3
2,539,636	-		DZA65_RS11890	0.58	+0.3
2,539,636	-		DZA65_RS11890	0.58	-1.0
2,539,636	-		DZA65_RS11890	0.58	-0.2
2,539,636	-		DZA65_RS11890	0.58	-1.2
2,539,636	-		DZA65_RS11890	0.58	+1.2
2,539,636	-		DZA65_RS11890	0.58	+1.0
2,539,711	+		DZA65_RS11890	0.65	+0.3
2,539,711	+		DZA65_RS11890	0.65	+0.3
2,539,711	+		DZA65_RS11890	0.65	+0.6
2,539,711	+		DZA65_RS11890	0.65	+0.0
2,539,712	-		DZA65_RS11890	0.65	-0.6
2,539,712	-		DZA65_RS11890	0.65	-0.5
2,539,735	+		DZA65_RS11890	0.67	-2.3
2,539,735	+		DZA65_RS11890	0.67	-0.7
2,539,736	-		DZA65_RS11890	0.67	+0.3
2,539,848	+		DZA65_RS11890	0.77	+0.0
2,539,849	-		DZA65_RS11890	0.77	-1.4
2,539,866	+		DZA65_RS11890	0.78	-0.6
2,539,866	+		DZA65_RS11890	0.78	-0.7
2,539,866	+		DZA65_RS11890	0.78	+0.8
2,539,866	+		DZA65_RS11890	0.78	-0.7
2,539,867	-		DZA65_RS11890	0.78	+1.4
2,539,867	-		DZA65_RS11890	0.78	+0.4
2,539,867	-		DZA65_RS11890	0.78	-0.3
2,539,921	+				-1.0
2,539,921	+		DZA65_RS11890	0.83	-2.0
2,539,921	+		DZA65_RS11890	0.83	+0.8
2,539,921	+		DZA65_RS11890	0.83	-1.8
2,539,921	+		DZA65_RS11890	0.83	-1.8
2,539,922	-		DZA65_RS11890	0.83	-1.0
2,539,922	-		DZA65_RS11890	0.83	+0.8
2,539,925	+		DZA65_RS11890	0.84	-1.6
2,540,001	+				-1.2
2,540,002	-				+0.4
2,540,002	-				-1.0
2,540,002	-				-1.9
2,540,002	-				+0.4
2,540,094	+				-2.1
2,540,095	-				-2.7
2,540,095	-				+2.2
2,540,112	+				+0.0
2,540,130	+				-2.8
2,540,130	+				+0.5
2,540,131	-				+0.4
2,540,131	-				+0.5
2,540,131	-				-0.6
2,540,131	-				+0.7
2,540,148	+				-0.8
2,540,148	+				-1.8
2,540,148	+				+1.2
2,540,148	+				+0.0
2,540,166	+				-1.2
2,540,166	+				-1.0
2,540,166	+				+2.6
2,540,166	+				-0.2
2,540,166	+				-0.7
2,540,166	+				-2.3
2,540,166	+				-1.0
2,540,166	+				-1.0
2,540,166	+				+0.2
2,540,167	-				+1.3
2,540,167	-				+0.8
2,540,167	-				-0.6
2,540,200	+				+0.8
2,540,200	+				+0.4
2,540,201	-				+1.0
2,540,201	-				-2.3
2,540,201	-				+0.5
2,540,201	-				-0.6
2,540,329	+				-2.6
2,540,329	+				-3.1
2,540,330	-				-3.0
2,540,330	-				-0.2
2,540,339	+				+0.3
2,540,394	+		DZA65_RS11895	0.11	-1.6
2,540,486	-		DZA65_RS11895	0.18	+0.6
2,540,486	-		DZA65_RS11895	0.18	-0.5
2,540,527	+		DZA65_RS11895	0.22	+0.2
2,540,528	-		DZA65_RS11895	0.22	-1.1
2,540,528	-		DZA65_RS11895	0.22	+0.8
2,540,543	+		DZA65_RS11895	0.23	-0.1
2,540,543	+		DZA65_RS11895	0.23	-0.3
2,540,543	+		DZA65_RS11895	0.23	-0.7
2,540,543	+		DZA65_RS11895	0.23	-0.6
2,540,562	+		DZA65_RS11895	0.24	-2.0
2,540,562	+		DZA65_RS11895	0.24	+1.0
2,540,562	+		DZA65_RS11895	0.24	-0.9
2,540,562	+		DZA65_RS11895	0.24	-0.7
2,540,562	+		DZA65_RS11895	0.24	+0.6
2,540,563	-		DZA65_RS11895	0.25	-0.6
2,540,563	-		DZA65_RS11895	0.25	-0.1
2,540,563	-		DZA65_RS11895	0.25	-0.7
2,540,563	-		DZA65_RS11895	0.25	+1.8
2,540,565	+				+0.0
2,540,565	+		DZA65_RS11895	0.25	+0.6
2,540,565	+		DZA65_RS11895	0.25	+1.6
2,540,565	+		DZA65_RS11895	0.25	+0.2
2,540,565	+				-1.6
2,540,566	-		DZA65_RS11895	0.25	-0.7
2,540,566	-		DZA65_RS11895	0.25	-0.4
2,540,566	-		DZA65_RS11895	0.25	+1.2
2,540,566	-		DZA65_RS11895	0.25	+1.6
2,540,566	-		DZA65_RS11895	0.25	-0.4
2,540,566	-		DZA65_RS11895	0.25	+0.7
2,540,566	-		DZA65_RS11895	0.25	+0.4
2,540,566	-		DZA65_RS11895	0.25	-1.2
2,540,590	+		DZA65_RS11895	0.27	-0.5
2,540,590	+		DZA65_RS11895	0.27	-0.7
2,540,590	+				+1.0
2,540,590	+		DZA65_RS11895	0.27	+0.5
2,540,590	+		DZA65_RS11895	0.27	+1.2
2,540,591	-		DZA65_RS11895	0.27	-0.5
2,540,591	-		DZA65_RS11895	0.27	+0.3
2,540,591	-		DZA65_RS11895	0.27	-1.1
2,540,591	-		DZA65_RS11895	0.27	-1.6
2,540,592	+				+1.2
2,540,592	+		DZA65_RS11895	0.27	-1.8
2,540,592	+		DZA65_RS11895	0.27	+1.1
2,540,592	+		DZA65_RS11895	0.27	-0.2
2,540,592	+		DZA65_RS11895	0.27	+0.3
2,540,593	-		DZA65_RS11895	0.27	-1.1
2,540,593	-		DZA65_RS11895	0.27	+0.0
2,540,593	-		DZA65_RS11895	0.27	+1.1
2,540,593	-		DZA65_RS11895	0.27	+1.5
2,540,593	-		DZA65_RS11895	0.27	-3.3
2,540,593	-		DZA65_RS11895	0.27	-0.1
2,540,593	-		DZA65_RS11895	0.27	+0.8
2,540,593	-		DZA65_RS11895	0.27	-2.1
2,540,691	+		DZA65_RS11895	0.35	+0.5
2,540,692	-		DZA65_RS11895	0.35	+0.0
2,540,692	-		DZA65_RS11895	0.35	+0.8
2,540,692	-		DZA65_RS11895	0.35	+1.2
2,540,692	-		DZA65_RS11895	0.35	-0.4
2,540,692	-		DZA65_RS11895	0.35	-0.8
2,540,739	+				+4.6
2,540,739	+		DZA65_RS11895	0.38	+1.5
2,540,740	-		DZA65_RS11895	0.38	+0.1
2,540,740	-		DZA65_RS11895	0.38	+0.8
2,540,855	+		DZA65_RS11895	0.48	-1.0
2,540,855	+		DZA65_RS11895	0.48	+0.2
2,540,855	+		DZA65_RS11895	0.48	-0.4
2,540,855	+		DZA65_RS11895	0.48	-0.7
2,540,855	+		DZA65_RS11895	0.48	-0.3
2,540,855	+		DZA65_RS11895	0.48	+0.9
2,540,856	-		DZA65_RS11895	0.48	-1.3
2,540,856	-		DZA65_RS11895	0.48	+1.0
2,540,856	-		DZA65_RS11895	0.48	+0.4
2,540,856	-		DZA65_RS11895	0.48	+1.3
2,540,856	-		DZA65_RS11895	0.48	-0.1
2,540,856	-		DZA65_RS11895	0.48	+0.0
2,540,907	+		DZA65_RS11895	0.52	-0.5
2,540,907	+		DZA65_RS11895	0.52	-2.8
2,540,944	-		DZA65_RS11895	0.55	+0.6
2,541,028	+		DZA65_RS11895	0.61	+0.9
2,541,133	+		DZA65_RS11895	0.69	-2.1
2,541,281	-		DZA65_RS11895	0.81	+1.7
2,541,286	+		DZA65_RS11895	0.81	+0.9
2,541,286	+		DZA65_RS11895	0.81	+0.2
2,541,286	+		DZA65_RS11895	0.81	-1.6
2,541,287	-		DZA65_RS11895	0.82	+1.5
2,541,287	-		DZA65_RS11895	0.82	+2.1
2,541,287	-		DZA65_RS11895	0.82	-1.0
2,541,293	+		DZA65_RS11895	0.82	-0.1
2,541,296	-		DZA65_RS11895	0.82	-1.4
2,541,296	-		DZA65_RS11895	0.82	-0.3
2,541,323	+		DZA65_RS11895	0.84	+1.8
2,541,323	+		DZA65_RS11895	0.84	-1.3
2,541,324	-		DZA65_RS11895	0.84	+0.5
2,541,324	-		DZA65_RS11895	0.84	+0.0
2,541,324	-		DZA65_RS11895	0.84	+0.6
2,541,324	-		DZA65_RS11895	0.84	+0.0
2,541,324	-		DZA65_RS11895	0.84	-0.5
2,541,425	+				+0.6
2,541,425	+				+0.2
2,541,425	+				-0.4
2,541,426	-				-0.4
2,541,426	-				+0.2
2,541,455	+				-0.3
2,541,455	+				-0.6
2,541,456	-				+0.0
2,541,456	-				-0.5
2,541,489	+				-0.1
2,541,489	+				-0.3
2,541,490	-				+0.4
2,541,490	-				-0.3
2,541,490	-				+0.0
2,541,490	-				+0.3
2,541,509	+				+0.5
2,541,510	-				-0.8
2,541,510	-				-1.0
2,541,541	+				-0.6
2,541,541	+				+0.7
2,541,541	+				+0.5
2,541,541	+				+0.2
2,541,542	-				+0.6
2,541,553	+				+0.2
2,541,553	+				+1.2
2,541,554	-				+0.5
2,541,557	+				-0.7
2,541,558	-				-0.6
2,541,558	-				+0.3
2,541,558	-				+1.3
2,541,558	-				-0.1
2,541,558	-				+1.9
2,541,577	+				-0.4
2,541,577	+				-1.3
2,541,577	+				+0.0
2,541,597	+				+0.2
2,541,669	+				-1.1
2,541,669	+				+0.1
2,541,670	-				-0.8
2,541,778	+				-1.6
2,541,778	+				-1.6
2,541,779	-				+0.5
2,541,779	-				+0.9
2,541,779	-				+0.5
2,541,781	+				-0.3
2,541,798	-		DZA65_RS11900	0.15	+0.7
2,541,979	-				-0.2
2,542,025	+				-2.8
2,542,026	-				+0.0
2,542,047	+				-0.7
2,542,047	+				+1.2
2,542,133	+				+0.2
2,542,150	-				-0.9
2,542,166	+				-1.6
2,542,167	-				-1.6
2,542,185	+				-1.2
2,542,185	+				-0.2
2,542,185	+				+0.8
2,542,185	+				+1.8
2,542,186	-				+0.7
2,542,187	+				+0.2
2,542,200	+				+0.0
2,542,200	+				+0.0
2,542,201	-				+0.2
2,542,280	+		DZA65_RS11905	0.11	+0.0
2,542,280	+		DZA65_RS11905	0.11	+0.8
2,542,280	+		DZA65_RS11905	0.11	+1.0
2,542,280	+		DZA65_RS11905	0.11	+1.0
2,542,280	+		DZA65_RS11905	0.11	-0.1
2,542,280	+		DZA65_RS11905	0.11	+0.6
2,542,281	-		DZA65_RS11905	0.11	+0.7
2,542,301	+		DZA65_RS11905	0.12	+0.2
2,542,302	-		DZA65_RS11905	0.12	-0.4
2,542,302	-		DZA65_RS11905	0.12	+0.0
2,542,302	-		DZA65_RS11905	0.12	-0.5
2,542,339	-		DZA65_RS11905	0.14	+0.5
2,542,468	-		DZA65_RS11905	0.19	-1.0
2,542,488	+		DZA65_RS11905	0.20	+1.2