Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04525 and DZA65_RS04530 are separated by 121 nucleotides DZA65_RS04530 and DZA65_RS04535 overlap by 26 nucleotides DZA65_RS04535 and DZA65_RS04540 are separated by 5 nucleotides
DZA65_RS04525: DZA65_RS04525 - tartrate dehydrogenase, at 942,897 to 943,982
_RS04525
DZA65_RS04530: DZA65_RS04530 - LysR family transcriptional regulator, at 944,104 to 945,060
_RS04530
DZA65_RS04535: DZA65_RS04535 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 945,035 to 945,877
_RS04535
DZA65_RS04540: DZA65_RS04540 - queuosine precursor transporter, at 945,883 to 946,758
_RS04540
Position (kb) 944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 943.307 kb on + strand, within DZA65_RS04525 at 943.313 kb on + strand, within DZA65_RS04525 at 943.314 kb on - strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.379 kb on - strand, within DZA65_RS04525 at 943.561 kb on + strand, within DZA65_RS04525 at 943.591 kb on + strand, within DZA65_RS04525 at 943.591 kb on + strand, within DZA65_RS04525 at 943.672 kb on + strand, within DZA65_RS04525 at 943.672 kb on + strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.828 kb on + strand, within DZA65_RS04525 at 943.828 kb on + strand, within DZA65_RS04525 at 943.829 kb on - strand, within DZA65_RS04525 at 943.829 kb on - strand, within DZA65_RS04525 at 943.831 kb on + strand, within DZA65_RS04525 at 943.831 kb on + strand, within DZA65_RS04525 at 943.832 kb on - strand, within DZA65_RS04525 at 943.832 kb on - strand, within DZA65_RS04525 at 943.908 kb on + strand at 943.909 kb on - strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.036 kb on - strand at 944.036 kb on - strand at 944.036 kb on - strand at 944.039 kb on + strand at 944.039 kb on + strand at 944.039 kb on + strand at 944.040 kb on - strand at 944.040 kb on - strand at 944.140 kb on - strand at 944.140 kb on - strand at 944.240 kb on + strand, within DZA65_RS04530 at 944.256 kb on + strand, within DZA65_RS04530 at 944.256 kb on + strand, within DZA65_RS04530 at 944.296 kb on + strand, within DZA65_RS04530 at 944.296 kb on + strand, within DZA65_RS04530 at 944.297 kb on - strand, within DZA65_RS04530 at 944.351 kb on + strand, within DZA65_RS04530 at 944.351 kb on + strand, within DZA65_RS04530 at 944.352 kb on - strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand at 944.484 kb on + strand, within DZA65_RS04530 at 944.484 kb on + strand, within DZA65_RS04530 at 944.484 kb on + strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.614 kb on + strand, within DZA65_RS04530 at 944.686 kb on + strand, within DZA65_RS04530 at 944.687 kb on - strand, within DZA65_RS04530 at 944.687 kb on - strand, within DZA65_RS04530 at 944.717 kb on - strand, within DZA65_RS04530 at 944.736 kb on + strand, within DZA65_RS04530 at 944.815 kb on - strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.885 kb on - strand, within DZA65_RS04530 at 944.885 kb on - strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.917 kb on + strand, within DZA65_RS04530 at 944.918 kb on - strand, within DZA65_RS04530 at 944.918 kb on - strand, within DZA65_RS04530 at 945.036 kb on + strand at 945.037 kb on - strand at 945.037 kb on - strand at 945.118 kb on + strand at 945.118 kb on + strand at 945.121 kb on - strand, within DZA65_RS04535 at 945.172 kb on + strand, within DZA65_RS04535 at 945.173 kb on - strand, within DZA65_RS04535 at 945.173 kb on - strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.303 kb on + strand, within DZA65_RS04535 at 945.304 kb on - strand, within DZA65_RS04535 at 945.304 kb on - strand, within DZA65_RS04535 at 945.386 kb on + strand at 945.386 kb on + strand, within DZA65_RS04535 at 945.386 kb on + strand, within DZA65_RS04535 at 945.387 kb on - strand, within DZA65_RS04535 at 945.390 kb on + strand, within DZA65_RS04535 at 945.390 kb on + strand, within DZA65_RS04535 at 945.391 kb on - strand, within DZA65_RS04535 at 945.492 kb on + strand, within DZA65_RS04535 at 945.493 kb on - strand, within DZA65_RS04535 at 945.493 kb on - strand, within DZA65_RS04535 at 945.554 kb on + strand at 945.554 kb on + strand, within DZA65_RS04535 at 945.555 kb on - strand, within DZA65_RS04535 at 945.555 kb on - strand, within DZA65_RS04535 at 945.595 kb on + strand, within DZA65_RS04535 at 945.595 kb on + strand, within DZA65_RS04535 at 945.596 kb on - strand, within DZA65_RS04535 at 945.600 kb on + strand, within DZA65_RS04535 at 945.600 kb on + strand, within DZA65_RS04535 at 945.600 kb on + strand, within DZA65_RS04535 at 945.601 kb on - strand, within DZA65_RS04535 at 945.601 kb on - strand, within DZA65_RS04535 at 945.601 kb on - strand, within DZA65_RS04535 at 945.601 kb on - strand, within DZA65_RS04535 at 945.602 kb on + strand, within DZA65_RS04535 at 945.602 kb on + strand, within DZA65_RS04535 at 945.602 kb on + strand, within DZA65_RS04535 at 945.602 kb on + strand, within DZA65_RS04535 at 945.602 kb on + strand, within DZA65_RS04535 at 945.603 kb on - strand, within DZA65_RS04535 at 945.603 kb on - strand, within DZA65_RS04535 at 945.603 kb on - strand, within DZA65_RS04535 at 945.603 kb on - strand, within DZA65_RS04535 at 945.603 kb on - strand, within DZA65_RS04535 at 945.652 kb on + strand, within DZA65_RS04535 at 945.652 kb on + strand, within DZA65_RS04535 at 945.652 kb on + strand, within DZA65_RS04535 at 945.652 kb on + strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.813 kb on + strand at 945.813 kb on + strand at 945.850 kb on + strand at 945.857 kb on - strand at 945.857 kb on - strand at 945.868 kb on + strand at 945.868 kb on + strand at 945.868 kb on + strand at 945.869 kb on - strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.872 kb on - strand at 945.872 kb on - strand at 945.872 kb on - strand at 945.872 kb on - strand at 945.872 kb on - strand at 945.872 kb on - strand at 945.895 kb on + strand at 945.896 kb on - strand at 945.896 kb on - strand at 945.896 kb on - strand at 945.896 kb on - strand at 945.898 kb on + strand at 945.898 kb on + strand at 945.898 kb on + strand at 945.899 kb on - strand at 945.918 kb on - strand at 945.918 kb on - strand at 945.918 kb on - strand at 945.944 kb on + strand at 945.944 kb on + strand at 945.945 kb on - strand at 945.945 kb on - strand at 945.945 kb on - strand at 945.945 kb on - strand at 945.945 kb on - strand at 945.945 kb on - strand at 945.971 kb on + strand, within DZA65_RS04540 at 945.972 kb on - strand, within DZA65_RS04540 at 945.972 kb on - strand, within DZA65_RS04540 at 945.972 kb on - strand, within DZA65_RS04540 at 946.035 kb on + strand, within DZA65_RS04540 at 946.035 kb on + strand, within DZA65_RS04540 at 946.035 kb on + strand, within DZA65_RS04540 at 946.035 kb on + strand, within DZA65_RS04540 at 946.036 kb on - strand, within DZA65_RS04540 at 946.036 kb on - strand, within DZA65_RS04540 at 946.038 kb on - strand, within DZA65_RS04540
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 943,307 + DZA65_RS04525 0.38 +2.6 943,313 + DZA65_RS04525 0.38 -0.6 943,314 - DZA65_RS04525 0.38 +0.4 943,318 + DZA65_RS04525 0.39 -1.7 943,318 + DZA65_RS04525 0.39 -0.0 943,318 + DZA65_RS04525 0.39 +0.9 943,318 + DZA65_RS04525 0.39 +0.2 943,318 + DZA65_RS04525 0.39 +0.0 943,318 + DZA65_RS04525 0.39 +0.9 943,318 + DZA65_RS04525 0.39 +1.4 943,318 + DZA65_RS04525 0.39 +0.3 943,318 + DZA65_RS04525 0.39 +1.6 943,319 - DZA65_RS04525 0.39 -0.0 943,319 - DZA65_RS04525 0.39 +0.5 943,319 - +1.4 943,319 - DZA65_RS04525 0.39 -1.6 943,319 - DZA65_RS04525 0.39 -0.9 943,319 - DZA65_RS04525 0.39 -0.2 943,319 - DZA65_RS04525 0.39 -2.4 943,379 - DZA65_RS04525 0.44 +0.1 943,561 + DZA65_RS04525 0.61 -1.9 943,591 + DZA65_RS04525 0.64 +0.7 943,591 + DZA65_RS04525 0.64 +0.9 943,672 + DZA65_RS04525 0.71 +0.7 943,672 + DZA65_RS04525 0.71 +0.6 943,673 - DZA65_RS04525 0.71 +0.3 943,673 - DZA65_RS04525 0.71 -0.0 943,673 - DZA65_RS04525 0.71 -0.6 943,762 + DZA65_RS04525 0.80 -0.9 943,762 + DZA65_RS04525 0.80 -0.3 943,762 + DZA65_RS04525 0.80 +1.6 943,762 + DZA65_RS04525 0.80 -0.4 943,763 - DZA65_RS04525 0.80 +0.7 943,763 - DZA65_RS04525 0.80 +2.0 943,763 - DZA65_RS04525 0.80 -2.1 943,763 - DZA65_RS04525 0.80 -0.5 943,763 - DZA65_RS04525 0.80 -2.0 943,828 + DZA65_RS04525 0.86 -0.8 943,828 + DZA65_RS04525 0.86 -0.5 943,829 - DZA65_RS04525 0.86 -0.4 943,829 - DZA65_RS04525 0.86 +0.4 943,831 + DZA65_RS04525 0.86 -0.3 943,831 + DZA65_RS04525 0.86 +0.8 943,832 - DZA65_RS04525 0.86 -2.4 943,832 - DZA65_RS04525 0.86 -2.1 943,908 + -1.4 943,909 - -1.9 944,035 + -0.1 944,035 + -1.0 944,035 + +0.3 944,035 + -0.7 944,035 + +1.0 944,035 + -0.1 944,035 + +1.4 944,035 + -0.4 944,035 + +0.4 944,036 - +1.9 944,036 - +0.8 944,036 - +0.6 944,039 + +0.4 944,039 + -0.8 944,039 + +1.0 944,040 - +0.9 944,040 - +1.6 944,140 - -1.2 944,140 - -0.8 944,240 + DZA65_RS04530 0.14 -0.3 944,256 + DZA65_RS04530 0.16 -0.1 944,256 + DZA65_RS04530 0.16 -0.8 944,296 + DZA65_RS04530 0.20 -1.4 944,296 + DZA65_RS04530 0.20 +1.5 944,297 - DZA65_RS04530 0.20 -0.4 944,351 + DZA65_RS04530 0.26 +0.8 944,351 + DZA65_RS04530 0.26 -0.8 944,352 - DZA65_RS04530 0.26 +0.1 944,421 + DZA65_RS04530 0.33 -0.3 944,421 + DZA65_RS04530 0.33 +0.4 944,421 + DZA65_RS04530 0.33 +1.4 944,421 + +0.4 944,484 + DZA65_RS04530 0.40 -0.4 944,484 + DZA65_RS04530 0.40 -0.3 944,484 + DZA65_RS04530 0.40 -0.4 944,485 - DZA65_RS04530 0.40 +1.5 944,485 - DZA65_RS04530 0.40 -1.6 944,485 - DZA65_RS04530 0.40 +0.7 944,614 + DZA65_RS04530 0.53 -0.8 944,686 + DZA65_RS04530 0.61 +1.2 944,687 - DZA65_RS04530 0.61 +0.2 944,687 - DZA65_RS04530 0.61 +1.0 944,717 - DZA65_RS04530 0.64 -0.3 944,736 + DZA65_RS04530 0.66 -1.4 944,815 - DZA65_RS04530 0.74 +1.6 944,884 + DZA65_RS04530 0.82 -0.0 944,884 + DZA65_RS04530 0.82 -1.7 944,884 + DZA65_RS04530 0.82 -1.6 944,885 - DZA65_RS04530 0.82 +0.1 944,885 - DZA65_RS04530 0.82 +0.1 944,908 + DZA65_RS04530 0.84 +0.7 944,908 + DZA65_RS04530 0.84 +0.3 944,908 + DZA65_RS04530 0.84 -0.1 944,908 + DZA65_RS04530 0.84 -0.8 944,909 - DZA65_RS04530 0.84 -1.9 944,909 - DZA65_RS04530 0.84 -0.3 944,909 - DZA65_RS04530 0.84 +1.1 944,909 - DZA65_RS04530 0.84 +2.0 944,909 - DZA65_RS04530 0.84 +1.1 944,909 - DZA65_RS04530 0.84 -0.2 944,909 - DZA65_RS04530 0.84 +1.9 944,909 - DZA65_RS04530 0.84 +0.6 944,909 - DZA65_RS04530 0.84 +0.3 944,909 - DZA65_RS04530 0.84 +0.3 944,909 - DZA65_RS04530 0.84 +1.8 944,917 + DZA65_RS04530 0.85 +1.2 944,918 - DZA65_RS04530 0.85 -1.3 944,918 - DZA65_RS04530 0.85 +2.3 945,036 + +1.3 945,037 - -0.1 945,037 - -0.0 945,118 + -0.5 945,118 + +0.4 945,121 - DZA65_RS04535 0.10 -0.6 945,172 + DZA65_RS04535 0.16 -1.3 945,173 - DZA65_RS04535 0.16 -0.0 945,173 - DZA65_RS04535 0.16 +0.4 945,270 + DZA65_RS04535 0.28 -0.6 945,270 + DZA65_RS04535 0.28 +0.4 945,270 + DZA65_RS04535 0.28 -0.8 945,270 + DZA65_RS04535 0.28 -1.1 945,270 + DZA65_RS04535 0.28 +2.8 945,270 + DZA65_RS04535 0.28 +1.2 945,271 - DZA65_RS04535 0.28 -2.6 945,271 - DZA65_RS04535 0.28 +0.6 945,271 - DZA65_RS04535 0.28 -0.6 945,271 - DZA65_RS04535 0.28 -1.2 945,271 - DZA65_RS04535 0.28 -0.1 945,271 - DZA65_RS04535 0.28 -1.4 945,271 - DZA65_RS04535 0.28 +0.4 945,303 + DZA65_RS04535 0.32 -2.4 945,304 - DZA65_RS04535 0.32 +1.0 945,304 - DZA65_RS04535 0.32 +0.9 945,386 + -0.1 945,386 + DZA65_RS04535 0.42 -1.6 945,386 + DZA65_RS04535 0.42 -0.9 945,387 - DZA65_RS04535 0.42 -0.5 945,390 + DZA65_RS04535 0.42 +0.7 945,390 + DZA65_RS04535 0.42 -0.6 945,391 - DZA65_RS04535 0.42 +0.1 945,492 + DZA65_RS04535 0.54 +0.4 945,493 - DZA65_RS04535 0.54 -0.6 945,493 - DZA65_RS04535 0.54 -0.8 945,554 + -1.1 945,554 + DZA65_RS04535 0.62 +2.8 945,555 - DZA65_RS04535 0.62 +1.3 945,555 - DZA65_RS04535 0.62 +1.0 945,595 + DZA65_RS04535 0.66 -0.6 945,595 + DZA65_RS04535 0.66 -0.2 945,596 - DZA65_RS04535 0.67 -0.7 945,600 + DZA65_RS04535 0.67 -1.1 945,600 + DZA65_RS04535 0.67 -1.4 945,600 + DZA65_RS04535 0.67 -0.3 945,601 - DZA65_RS04535 0.67 +0.1 945,601 - DZA65_RS04535 0.67 +0.4 945,601 - DZA65_RS04535 0.67 -1.4 945,601 - DZA65_RS04535 0.67 -0.4 945,602 + DZA65_RS04535 0.67 +0.0 945,602 + DZA65_RS04535 0.67 -0.2 945,602 + DZA65_RS04535 0.67 -0.1 945,602 + DZA65_RS04535 0.67 -0.6 945,602 + DZA65_RS04535 0.67 -0.7 945,603 - DZA65_RS04535 0.67 +3.0 945,603 - DZA65_RS04535 0.67 +1.5 945,603 - DZA65_RS04535 0.67 -0.0 945,603 - DZA65_RS04535 0.67 +0.4 945,603 - DZA65_RS04535 0.67 -0.6 945,652 + DZA65_RS04535 0.73 +0.4 945,652 + DZA65_RS04535 0.73 +0.1 945,652 + DZA65_RS04535 0.73 +0.1 945,652 + DZA65_RS04535 0.73 -0.8 945,653 - DZA65_RS04535 0.73 -0.6 945,653 - DZA65_RS04535 0.73 -0.6 945,653 - DZA65_RS04535 0.73 +0.3 945,653 - DZA65_RS04535 0.73 -1.5 945,653 - DZA65_RS04535 0.73 -2.5 945,653 - DZA65_RS04535 0.73 -0.4 945,653 - DZA65_RS04535 0.73 -0.4 945,653 - DZA65_RS04535 0.73 -0.4 945,813 + -0.3 945,813 + +0.2 945,850 + -0.1 945,857 - -1.1 945,857 - -0.6 945,868 + -0.6 945,868 + -0.4 945,868 + -0.1 945,869 - +1.7 945,871 + -0.2 945,871 + -0.1 945,871 + -0.9 945,871 + +0.3 945,871 + +0.4 945,871 + +0.4 945,871 + -0.3 945,872 - +1.4 945,872 - -1.0 945,872 - -2.6 945,872 - +0.6 945,872 - -0.4 945,872 - +0.4 945,895 + +0.4 945,896 - +1.0 945,896 - +2.6 945,896 - -0.4 945,896 - -1.0 945,898 + -0.6 945,898 + -0.0 945,898 + -0.0 945,899 - -0.7 945,918 - +0.3 945,918 - +1.0 945,918 - +0.3 945,944 + -0.4 945,944 + -1.8 945,945 - -0.2 945,945 - -2.6 945,945 - -0.1 945,945 - +0.1 945,945 - -0.2 945,945 - -1.1 945,971 + DZA65_RS04540 0.10 -1.4 945,972 - DZA65_RS04540 0.10 -1.6 945,972 - DZA65_RS04540 0.10 -0.6 945,972 - DZA65_RS04540 0.10 +0.5 946,035 + DZA65_RS04540 0.17 -0.9 946,035 + DZA65_RS04540 0.17 +0.4 946,035 + DZA65_RS04540 0.17 -3.3 946,035 + DZA65_RS04540 0.17 -0.6 946,036 - DZA65_RS04540 0.17 -1.0 946,036 - DZA65_RS04540 0.17 -0.9 946,038 - DZA65_RS04540 0.18 -1.5
Or see this region's nucleotide sequence