Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03170 and DZA65_RS03175 are separated by 103 nucleotides DZA65_RS03175 and DZA65_RS03180 are separated by 264 nucleotides DZA65_RS03180 and DZA65_RS03185 are separated by 123 nucleotides
DZA65_RS03170: DZA65_RS03170 - Obg family GTPase CgtA, at 672,765 to 673,940
_RS03170
DZA65_RS03175: DZA65_RS03175 - serine-type D-Ala-D-Ala carboxypeptidase, at 674,044 to 675,477
_RS03175
DZA65_RS03180: DZA65_RS03180 - transcription elongation factor GreA, at 675,742 to 676,218
_RS03180
DZA65_RS03185: DZA65_RS03185 - ribosome assembly RNA-binding protein YhbY, at 676,342 to 676,635
_RS03185
Position (kb) 674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 673.747 kb on + strand, within DZA65_RS03170 at 673.747 kb on + strand, within DZA65_RS03170 at 673.747 kb on + strand, within DZA65_RS03170 at 673.833 kb on + strand at 673.834 kb on - strand at 673.947 kb on + strand at 673.987 kb on + strand at 673.987 kb on + strand at 673.987 kb on + strand at 673.987 kb on + strand at 673.988 kb on - strand at 673.988 kb on - strand at 673.988 kb on - strand at 673.998 kb on - strand at 674.057 kb on + strand at 674.057 kb on + strand at 674.057 kb on + strand at 674.058 kb on - strand at 674.059 kb on + strand at 674.059 kb on + strand at 674.059 kb on + strand at 674.059 kb on + strand at 674.059 kb on + strand at 674.060 kb on - strand at 674.060 kb on - strand at 674.060 kb on - strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.070 kb on - strand at 674.147 kb on + strand at 674.147 kb on + strand at 674.147 kb on + strand at 674.148 kb on - strand at 674.148 kb on - strand at 674.187 kb on + strand at 674.188 kb on - strand, within DZA65_RS03175 at 674.188 kb on - strand, within DZA65_RS03175 at 674.204 kb on + strand, within DZA65_RS03175 at 674.204 kb on + strand, within DZA65_RS03175 at 674.204 kb on + strand, within DZA65_RS03175 at 674.204 kb on + strand, within DZA65_RS03175 at 674.205 kb on - strand, within DZA65_RS03175 at 674.205 kb on - strand, within DZA65_RS03175 at 674.205 kb on - strand, within DZA65_RS03175 at 674.205 kb on - strand, within DZA65_RS03175 at 674.281 kb on + strand, within DZA65_RS03175 at 674.281 kb on + strand, within DZA65_RS03175 at 674.282 kb on - strand, within DZA65_RS03175 at 674.282 kb on - strand, within DZA65_RS03175 at 674.282 kb on - strand, within DZA65_RS03175 at 674.316 kb on + strand, within DZA65_RS03175 at 674.317 kb on - strand, within DZA65_RS03175 at 674.321 kb on + strand, within DZA65_RS03175 at 674.351 kb on + strand, within DZA65_RS03175 at 674.351 kb on + strand, within DZA65_RS03175 at 674.351 kb on + strand, within DZA65_RS03175 at 674.351 kb on + strand, within DZA65_RS03175 at 674.352 kb on - strand, within DZA65_RS03175 at 674.352 kb on - strand, within DZA65_RS03175 at 674.352 kb on - strand, within DZA65_RS03175 at 674.356 kb on + strand, within DZA65_RS03175 at 674.357 kb on - strand, within DZA65_RS03175 at 674.357 kb on - strand, within DZA65_RS03175 at 674.357 kb on - strand, within DZA65_RS03175 at 674.391 kb on + strand, within DZA65_RS03175 at 674.391 kb on + strand, within DZA65_RS03175 at 674.391 kb on + strand, within DZA65_RS03175 at 674.391 kb on + strand, within DZA65_RS03175 at 674.391 kb on + strand, within DZA65_RS03175 at 674.391 kb on + strand at 674.392 kb on - strand, within DZA65_RS03175 at 674.392 kb on - strand, within DZA65_RS03175 at 674.392 kb on - strand, within DZA65_RS03175 at 674.392 kb on - strand, within DZA65_RS03175 at 674.427 kb on + strand, within DZA65_RS03175 at 674.428 kb on - strand, within DZA65_RS03175 at 674.620 kb on + strand, within DZA65_RS03175 at 674.621 kb on - strand, within DZA65_RS03175 at 674.717 kb on + strand, within DZA65_RS03175 at 674.718 kb on - strand, within DZA65_RS03175 at 674.718 kb on - strand, within DZA65_RS03175 at 674.734 kb on + strand, within DZA65_RS03175 at 674.734 kb on + strand, within DZA65_RS03175 at 674.734 kb on + strand, within DZA65_RS03175 at 674.734 kb on + strand, within DZA65_RS03175 at 674.735 kb on - strand, within DZA65_RS03175 at 674.735 kb on - strand, within DZA65_RS03175 at 674.735 kb on - strand, within DZA65_RS03175 at 674.832 kb on - strand, within DZA65_RS03175 at 674.894 kb on + strand, within DZA65_RS03175 at 674.894 kb on + strand, within DZA65_RS03175 at 674.895 kb on - strand, within DZA65_RS03175 at 674.895 kb on - strand, within DZA65_RS03175 at 674.895 kb on - strand, within DZA65_RS03175 at 674.895 kb on - strand, within DZA65_RS03175 at 674.940 kb on + strand, within DZA65_RS03175 at 674.941 kb on - strand, within DZA65_RS03175 at 674.942 kb on + strand, within DZA65_RS03175 at 674.942 kb on + strand, within DZA65_RS03175 at 674.942 kb on + strand, within DZA65_RS03175 at 674.942 kb on + strand, within DZA65_RS03175 at 674.942 kb on + strand, within DZA65_RS03175 at 674.943 kb on - strand, within DZA65_RS03175 at 674.943 kb on - strand, within DZA65_RS03175 at 675.013 kb on - strand, within DZA65_RS03175 at 675.013 kb on - strand, within DZA65_RS03175 at 675.073 kb on + strand, within DZA65_RS03175 at 675.073 kb on + strand, within DZA65_RS03175 at 675.073 kb on + strand, within DZA65_RS03175 at 675.074 kb on - strand, within DZA65_RS03175 at 675.074 kb on - strand, within DZA65_RS03175 at 675.074 kb on - strand, within DZA65_RS03175 at 675.118 kb on + strand, within DZA65_RS03175 at 675.118 kb on + strand, within DZA65_RS03175 at 675.118 kb on + strand, within DZA65_RS03175 at 675.119 kb on - strand, within DZA65_RS03175 at 675.187 kb on + strand, within DZA65_RS03175 at 675.207 kb on + strand, within DZA65_RS03175 at 675.207 kb on + strand, within DZA65_RS03175 at 675.207 kb on + strand, within DZA65_RS03175 at 675.207 kb on + strand, within DZA65_RS03175 at 675.323 kb on + strand, within DZA65_RS03175 at 675.340 kb on - strand at 675.392 kb on + strand at 675.393 kb on - strand at 675.401 kb on + strand at 675.401 kb on + strand at 675.402 kb on - strand at 675.402 kb on - strand at 675.402 kb on - strand at 675.478 kb on - strand at 675.478 kb on - strand at 675.492 kb on - strand at 675.492 kb on - strand at 675.512 kb on + strand at 675.512 kb on + strand at 675.513 kb on - strand at 675.513 kb on - strand at 675.513 kb on - strand at 675.513 kb on - strand at 675.515 kb on + strand at 675.516 kb on - strand at 675.537 kb on + strand at 675.538 kb on - strand at 675.626 kb on + strand at 675.626 kb on + strand at 675.627 kb on - strand at 675.636 kb on + strand at 675.684 kb on + strand at 675.684 kb on + strand at 675.684 kb on + strand at 675.684 kb on + strand at 675.684 kb on + strand at 675.684 kb on + strand at 675.685 kb on - strand at 675.685 kb on - strand at 675.685 kb on - strand at 675.685 kb on - strand at 675.685 kb on - strand at 675.727 kb on - strand at 675.732 kb on + strand at 675.732 kb on + strand at 675.732 kb on + strand at 675.732 kb on + strand at 675.732 kb on + strand at 675.742 kb on - strand at 675.783 kb on - strand at 675.828 kb on + strand, within DZA65_RS03180 at 675.828 kb on + strand, within DZA65_RS03180 at 675.883 kb on + strand, within DZA65_RS03180 at 675.883 kb on + strand, within DZA65_RS03180 at 675.883 kb on + strand, within DZA65_RS03180 at 675.884 kb on - strand, within DZA65_RS03180 at 675.884 kb on - strand, within DZA65_RS03180 at 675.964 kb on - strand, within DZA65_RS03180 at 676.012 kb on - strand, within DZA65_RS03180 at 676.054 kb on + strand, within DZA65_RS03180 at 676.054 kb on + strand, within DZA65_RS03180 at 676.055 kb on - strand, within DZA65_RS03180 at 676.055 kb on - strand, within DZA65_RS03180 at 676.059 kb on + strand, within DZA65_RS03180 at 676.098 kb on + strand, within DZA65_RS03180 at 676.098 kb on + strand, within DZA65_RS03180 at 676.098 kb on + strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.133 kb on + strand, within DZA65_RS03180 at 676.184 kb on + strand at 676.184 kb on + strand at 676.185 kb on - strand at 676.185 kb on - strand at 676.210 kb on + strand at 676.211 kb on - strand at 676.211 kb on - strand at 676.251 kb on + strand at 676.251 kb on + strand at 676.279 kb on + strand at 676.383 kb on - strand, within DZA65_RS03185
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 673,747 + DZA65_RS03170 0.84 -0.0 673,747 + DZA65_RS03170 0.84 +0.1 673,747 + DZA65_RS03170 0.84 +0.8 673,833 + +0.6 673,834 - +0.7 673,947 + -0.2 673,987 + +0.0 673,987 + +0.6 673,987 + +0.6 673,987 + -1.0 673,988 - -0.0 673,988 - +0.4 673,988 - +1.8 673,998 - +0.8 674,057 + +0.1 674,057 + -1.1 674,057 + -0.9 674,058 - -1.0 674,059 + -1.2 674,059 + +1.6 674,059 + +1.9 674,059 + -0.8 674,059 + -1.1 674,060 - +0.1 674,060 - -0.7 674,060 - -0.4 674,061 + +0.1 674,061 + +0.2 674,061 + -1.4 674,061 + +0.9 674,061 + +0.4 674,061 + +0.7 674,061 + +0.5 674,062 - +0.8 674,062 - +0.2 674,062 - +0.4 674,062 - +0.5 674,062 - +0.8 674,062 - +0.3 674,062 - +2.1 674,062 - +0.8 674,062 - +0.6 674,062 - -0.3 674,062 - -0.6 674,070 - +0.7 674,147 + +0.8 674,147 + -0.0 674,147 + +2.7 674,148 - +0.3 674,148 - +2.4 674,187 + +1.0 674,188 - DZA65_RS03175 0.10 +0.6 674,188 - DZA65_RS03175 0.10 -0.3 674,204 + DZA65_RS03175 0.11 -1.4 674,204 + DZA65_RS03175 0.11 -0.9 674,204 + DZA65_RS03175 0.11 -0.1 674,204 + DZA65_RS03175 0.11 +0.4 674,205 - DZA65_RS03175 0.11 -0.8 674,205 - DZA65_RS03175 0.11 +1.0 674,205 - DZA65_RS03175 0.11 +0.6 674,205 - DZA65_RS03175 0.11 +1.0 674,281 + DZA65_RS03175 0.17 -0.2 674,281 + DZA65_RS03175 0.17 -2.9 674,282 - DZA65_RS03175 0.17 +0.7 674,282 - DZA65_RS03175 0.17 +0.1 674,282 - DZA65_RS03175 0.17 +1.1 674,316 + DZA65_RS03175 0.19 +1.1 674,317 - DZA65_RS03175 0.19 +0.8 674,321 + DZA65_RS03175 0.19 -1.0 674,351 + DZA65_RS03175 0.21 -0.7 674,351 + DZA65_RS03175 0.21 -0.0 674,351 + DZA65_RS03175 0.21 -0.4 674,351 + DZA65_RS03175 0.21 +0.3 674,352 - DZA65_RS03175 0.21 +0.6 674,352 - DZA65_RS03175 0.21 +0.1 674,352 - DZA65_RS03175 0.21 -0.6 674,356 + DZA65_RS03175 0.22 +0.6 674,357 - DZA65_RS03175 0.22 +0.7 674,357 - DZA65_RS03175 0.22 -0.0 674,357 - DZA65_RS03175 0.22 +0.6 674,391 + DZA65_RS03175 0.24 -0.8 674,391 + DZA65_RS03175 0.24 +0.4 674,391 + DZA65_RS03175 0.24 -0.4 674,391 + DZA65_RS03175 0.24 +0.6 674,391 + DZA65_RS03175 0.24 +0.5 674,391 + +0.1 674,392 - DZA65_RS03175 0.24 -0.8 674,392 - DZA65_RS03175 0.24 -0.6 674,392 - DZA65_RS03175 0.24 -1.3 674,392 - DZA65_RS03175 0.24 +0.1 674,427 + DZA65_RS03175 0.27 -0.0 674,428 - DZA65_RS03175 0.27 +0.7 674,620 + DZA65_RS03175 0.40 +1.1 674,621 - DZA65_RS03175 0.40 +0.9 674,717 + DZA65_RS03175 0.47 -0.0 674,718 - DZA65_RS03175 0.47 +1.6 674,718 - DZA65_RS03175 0.47 -3.4 674,734 + DZA65_RS03175 0.48 -0.9 674,734 + DZA65_RS03175 0.48 +0.2 674,734 + DZA65_RS03175 0.48 +0.9 674,734 + DZA65_RS03175 0.48 -0.2 674,735 - DZA65_RS03175 0.48 +0.0 674,735 - DZA65_RS03175 0.48 +0.6 674,735 - DZA65_RS03175 0.48 +1.1 674,832 - DZA65_RS03175 0.55 +1.0 674,894 + DZA65_RS03175 0.59 +0.9 674,894 + DZA65_RS03175 0.59 +0.8 674,895 - DZA65_RS03175 0.59 +1.2 674,895 - DZA65_RS03175 0.59 +1.0 674,895 - DZA65_RS03175 0.59 -0.5 674,895 - DZA65_RS03175 0.59 +0.6 674,940 + DZA65_RS03175 0.62 +0.6 674,941 - DZA65_RS03175 0.63 +0.8 674,942 + DZA65_RS03175 0.63 +1.0 674,942 + DZA65_RS03175 0.63 +1.3 674,942 + DZA65_RS03175 0.63 -0.4 674,942 + DZA65_RS03175 0.63 +0.6 674,942 + DZA65_RS03175 0.63 +0.1 674,943 - DZA65_RS03175 0.63 +1.0 674,943 - DZA65_RS03175 0.63 -0.0 675,013 - DZA65_RS03175 0.68 -0.2 675,013 - DZA65_RS03175 0.68 -2.0 675,073 + DZA65_RS03175 0.72 -0.2 675,073 + DZA65_RS03175 0.72 -0.2 675,073 + DZA65_RS03175 0.72 -1.8 675,074 - DZA65_RS03175 0.72 +1.1 675,074 - DZA65_RS03175 0.72 +0.2 675,074 - DZA65_RS03175 0.72 -0.0 675,118 + DZA65_RS03175 0.75 -0.1 675,118 + DZA65_RS03175 0.75 +1.0 675,118 + DZA65_RS03175 0.75 -0.5 675,119 - DZA65_RS03175 0.75 +1.0 675,187 + DZA65_RS03175 0.80 +0.6 675,207 + DZA65_RS03175 0.81 -0.4 675,207 + DZA65_RS03175 0.81 +0.8 675,207 + DZA65_RS03175 0.81 -0.9 675,207 + DZA65_RS03175 0.81 +0.6 675,323 + DZA65_RS03175 0.89 +0.8 675,340 - -1.8 675,392 + +0.4 675,393 - -2.6 675,401 + +1.5 675,401 + -0.0 675,402 - +0.8 675,402 - -1.6 675,402 - +0.2 675,478 - -0.1 675,478 - +0.3 675,492 - +0.1 675,492 - -0.6 675,512 + +0.1 675,512 + +0.9 675,513 - -0.6 675,513 - -1.4 675,513 - +0.8 675,513 - -0.2 675,515 + -0.8 675,516 - -1.0 675,537 + +1.0 675,538 - -1.4 675,626 + +0.4 675,626 + -1.6 675,627 - -0.9 675,636 + +0.6 675,684 + +0.6 675,684 + -0.6 675,684 + +0.2 675,684 + +1.4 675,684 + -0.8 675,684 + +0.4 675,685 - -1.4 675,685 - -0.7 675,685 - +0.3 675,685 - -0.7 675,685 - -1.3 675,727 - -1.2 675,732 + +0.7 675,732 + -0.3 675,732 + +1.4 675,732 + -0.9 675,732 + -0.4 675,742 - +0.1 675,783 - +0.6 675,828 + DZA65_RS03180 0.18 +1.3 675,828 + DZA65_RS03180 0.18 -0.0 675,883 + DZA65_RS03180 0.30 +0.6 675,883 + DZA65_RS03180 0.30 -1.8 675,883 + DZA65_RS03180 0.30 +0.3 675,884 - DZA65_RS03180 0.30 -0.1 675,884 - DZA65_RS03180 0.30 +0.1 675,964 - DZA65_RS03180 0.47 -0.3 676,012 - DZA65_RS03180 0.57 -0.8 676,054 + DZA65_RS03180 0.65 +0.3 676,054 + DZA65_RS03180 0.65 -2.3 676,055 - DZA65_RS03180 0.66 -0.4 676,055 - DZA65_RS03180 0.66 +0.3 676,059 + DZA65_RS03180 0.66 -0.7 676,098 + DZA65_RS03180 0.75 -0.2 676,098 + DZA65_RS03180 0.75 -2.0 676,098 + DZA65_RS03180 0.75 +0.4 676,099 - DZA65_RS03180 0.75 +0.7 676,099 - DZA65_RS03180 0.75 +0.8 676,099 - DZA65_RS03180 0.75 +0.5 676,099 - DZA65_RS03180 0.75 -0.0 676,099 - DZA65_RS03180 0.75 -0.0 676,099 - DZA65_RS03180 0.75 -0.4 676,133 + DZA65_RS03180 0.82 -0.1 676,184 + -1.4 676,184 + +0.6 676,185 - +1.1 676,185 - -0.2 676,210 + -1.4 676,211 - -2.0 676,211 - +0.7 676,251 + +0.1 676,251 + +1.3 676,279 + -0.4 676,383 - DZA65_RS03185 0.14 -0.9
Or see this region's nucleotide sequence