Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00560

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00555 and DZA65_RS00560 are separated by 1 nucleotidesDZA65_RS00560 and DZA65_RS00565 are separated by 157 nucleotides DZA65_RS00555: DZA65_RS00555 - hypothetical protein, at 127,555 to 128,598 _RS00555 DZA65_RS00560: DZA65_RS00560 - hypothetical protein, at 128,600 to 130,171 _RS00560 DZA65_RS00565: DZA65_RS00565 - hypothetical protein, at 130,329 to 131,759 _RS00565 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 127.657 kb on + strandat 127.658 kb on - strandat 127.673 kb on + strandat 127.746 kb on + strand, within DZA65_RS00555at 127.757 kb on + strand, within DZA65_RS00555at 127.757 kb on + strand, within DZA65_RS00555at 127.758 kb on - strand, within DZA65_RS00555at 127.760 kb on + strand, within DZA65_RS00555at 127.767 kb on + strand, within DZA65_RS00555at 127.845 kb on - strand, within DZA65_RS00555at 127.941 kb on + strand, within DZA65_RS00555at 127.941 kb on + strand, within DZA65_RS00555at 127.974 kb on + strand, within DZA65_RS00555at 127.974 kb on + strand, within DZA65_RS00555at 127.975 kb on - strand, within DZA65_RS00555at 127.975 kb on - strand, within DZA65_RS00555at 128.029 kb on - strand, within DZA65_RS00555at 128.161 kb on - strand, within DZA65_RS00555at 128.284 kb on - strand, within DZA65_RS00555at 128.285 kb on + strand, within DZA65_RS00555at 128.324 kb on + strand, within DZA65_RS00555at 128.325 kb on - strand, within DZA65_RS00555at 128.541 kb on + strandat 128.541 kb on + strandat 128.686 kb on - strandat 128.687 kb on + strandat 128.687 kb on + strandat 128.761 kb on + strand, within DZA65_RS00560at 128.776 kb on - strand, within DZA65_RS00560at 128.905 kb on + strand, within DZA65_RS00560at 129.083 kb on - strand, within DZA65_RS00560at 129.256 kb on + strand, within DZA65_RS00560at 129.368 kb on - strand, within DZA65_RS00560at 129.414 kb on + strand, within DZA65_RS00560at 129.415 kb on - strand, within DZA65_RS00560at 129.525 kb on + strand, within DZA65_RS00560at 129.610 kb on + strand, within DZA65_RS00560at 129.746 kb on - strand, within DZA65_RS00560at 129.799 kb on - strand, within DZA65_RS00560at 129.856 kb on - strand, within DZA65_RS00560at 129.859 kb on - strand, within DZA65_RS00560at 129.921 kb on - strand, within DZA65_RS00560at 129.929 kb on + strand, within DZA65_RS00560at 129.962 kb on - strand, within DZA65_RS00560at 130.005 kb on - strand, within DZA65_RS00560at 130.009 kb on - strand, within DZA65_RS00560at 130.009 kb on - strand, within DZA65_RS00560at 130.009 kb on - strand, within DZA65_RS00560at 130.012 kb on + strand, within DZA65_RS00560at 130.036 kb on + strandat 130.036 kb on + strandat 130.037 kb on - strandat 130.055 kb on - strandat 130.065 kb on + strandat 130.065 kb on + strandat 130.066 kb on - strandat 130.138 kb on - strandat 130.138 kb on - strandat 130.181 kb on + strandat 130.182 kb on - strandat 130.211 kb on - strandat 130.211 kb on - strandat 130.238 kb on + strandat 130.239 kb on - strandat 130.239 kb on - strandat 130.239 kb on - strandat 130.270 kb on + strandat 130.329 kb on - strandat 130.343 kb on - strandat 130.358 kb on + strandat 130.368 kb on - strandat 130.369 kb on + strandat 130.369 kb on + strandat 130.528 kb on + strand, within DZA65_RS00565at 130.603 kb on + strand, within DZA65_RS00565at 130.603 kb on + strand, within DZA65_RS00565at 130.769 kb on + strand, within DZA65_RS00565at 130.792 kb on + strand, within DZA65_RS00565at 130.793 kb on - strand, within DZA65_RS00565at 130.796 kb on - strand, within DZA65_RS00565at 130.880 kb on + strand, within DZA65_RS00565at 130.880 kb on + strand, within DZA65_RS00565at 130.938 kb on - strand, within DZA65_RS00565at 131.038 kb on + strand, within DZA65_RS00565at 131.039 kb on - strand, within DZA65_RS00565at 131.148 kb on - strand, within DZA65_RS00565at 131.151 kb on + strand, within DZA65_RS00565

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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127,657 + +1.2
127,658 - +0.8
127,673 + +1.8
127,746 + DZA65_RS00555 0.18 +0.9
127,757 + DZA65_RS00555 0.19 +2.2
127,757 + DZA65_RS00555 0.19 -0.2
127,758 - DZA65_RS00555 0.19 +0.8
127,760 + DZA65_RS00555 0.20 -0.3
127,767 + DZA65_RS00555 0.20 +2.2
127,845 - DZA65_RS00555 0.28 +0.4
127,941 + DZA65_RS00555 0.37 -0.6
127,941 + DZA65_RS00555 0.37 -0.0
127,974 + DZA65_RS00555 0.40 +1.0
127,974 + DZA65_RS00555 0.40 +0.1
127,975 - DZA65_RS00555 0.40 +0.8
127,975 - DZA65_RS00555 0.40 -0.1
128,029 - DZA65_RS00555 0.45 +0.2
128,161 - DZA65_RS00555 0.58 +2.7
128,284 - DZA65_RS00555 0.70 -0.1
128,285 + DZA65_RS00555 0.70 +0.8
128,324 + DZA65_RS00555 0.74 +0.1
128,325 - DZA65_RS00555 0.74 -0.2
128,541 + +0.6
128,541 + -2.5
128,686 - -0.9
128,687 + -0.1
128,687 + -2.1
128,761 + DZA65_RS00560 0.10 +0.6
128,776 - DZA65_RS00560 0.11 +0.0
128,905 + DZA65_RS00560 0.19 -0.8
129,083 - DZA65_RS00560 0.31 +1.7
129,256 + DZA65_RS00560 0.42 +0.8
129,368 - DZA65_RS00560 0.49 +0.0
129,414 + DZA65_RS00560 0.52 +1.2
129,415 - DZA65_RS00560 0.52 +0.3
129,525 + DZA65_RS00560 0.59 +0.2
129,610 + DZA65_RS00560 0.64 +1.4
129,746 - DZA65_RS00560 0.73 -0.8
129,799 - DZA65_RS00560 0.76 +3.4
129,856 - DZA65_RS00560 0.80 +1.6
129,859 - DZA65_RS00560 0.80 +0.1
129,921 - DZA65_RS00560 0.84 -0.6
129,929 + DZA65_RS00560 0.85 -0.3
129,962 - DZA65_RS00560 0.87 +2.3
130,005 - DZA65_RS00560 0.89 +0.1
130,009 - DZA65_RS00560 0.90 +1.1
130,009 - DZA65_RS00560 0.90 -1.4
130,009 - DZA65_RS00560 0.90 +0.0
130,012 + DZA65_RS00560 0.90 +0.8
130,036 + -2.0
130,036 + +0.7
130,037 - +0.4
130,055 - +1.3
130,065 + +0.0
130,065 + +2.4
130,066 - +0.0
130,138 - -0.3
130,138 - -1.2
130,181 + -2.9
130,182 - -0.9
130,211 - +0.0
130,211 - -0.5
130,238 + +2.1
130,239 - -0.5
130,239 - +0.8
130,239 - +0.0
130,270 + +0.6
130,329 - +1.0
130,343 - -0.2
130,358 + -0.5
130,368 - -0.0
130,369 + +2.7
130,369 + +0.4
130,528 + DZA65_RS00565 0.14 +0.1
130,603 + DZA65_RS00565 0.19 -0.6
130,603 + DZA65_RS00565 0.19 -0.1
130,769 + DZA65_RS00565 0.31 -1.9
130,792 + DZA65_RS00565 0.32 +0.4
130,793 - DZA65_RS00565 0.32 +0.6
130,796 - DZA65_RS00565 0.33 +0.9
130,880 + DZA65_RS00565 0.39 -0.8
130,880 + DZA65_RS00565 0.39 +0.4
130,938 - DZA65_RS00565 0.43 -0.4
131,038 + DZA65_RS00565 0.50 +0.2
131,039 - DZA65_RS00565 0.50 +0.1
131,148 - DZA65_RS00565 0.57 -0.9
131,151 + DZA65_RS00565 0.57 -0.0

Or see this region's nucleotide sequence