Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22795

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02385 and DZA65_RS22795 are separated by 49 nucleotidesDZA65_RS22795 and DZA65_RS02390 are separated by 1 nucleotides DZA65_RS02385: DZA65_RS02385 - chemotaxis protein, at 514,318 to 515,907 _RS02385 DZA65_RS22795: DZA65_RS22795 - hypothetical protein, at 515,957 to 516,133 _RS22795 DZA65_RS02390: DZA65_RS02390 - IS630 family transposase, at 516,135 to 517,172 _RS02390 Position (kb) 515 516 517Strain fitness (log2 ratio) -2 -1 0 1 2at 515.089 kb on + strand, within DZA65_RS02385at 515.089 kb on + strand, within DZA65_RS02385at 515.090 kb on - strand, within DZA65_RS02385at 515.127 kb on + strand, within DZA65_RS02385at 515.127 kb on + strand, within DZA65_RS02385at 515.127 kb on + strand, within DZA65_RS02385at 515.127 kb on + strand, within DZA65_RS02385at 515.128 kb on - strand, within DZA65_RS02385at 515.128 kb on - strand, within DZA65_RS02385at 515.129 kb on + strandat 515.129 kb on + strand, within DZA65_RS02385at 515.129 kb on + strand, within DZA65_RS02385at 515.129 kb on + strand, within DZA65_RS02385at 515.129 kb on + strand, within DZA65_RS02385at 515.129 kb on + strand, within DZA65_RS02385at 515.129 kb on + strand, within DZA65_RS02385at 515.129 kb on + strand, within DZA65_RS02385at 515.129 kb on + strand, within DZA65_RS02385at 515.129 kb on + strand, within DZA65_RS02385at 515.129 kb on + strand, within DZA65_RS02385at 515.129 kb on + strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.130 kb on - strand, within DZA65_RS02385at 515.177 kb on - strand, within DZA65_RS02385at 515.177 kb on - strand, within DZA65_RS02385at 515.184 kb on + strand, within DZA65_RS02385at 515.184 kb on + strand, within DZA65_RS02385at 515.184 kb on + strand, within DZA65_RS02385at 515.184 kb on + strand, within DZA65_RS02385at 515.184 kb on + strand, within DZA65_RS02385at 515.185 kb on - strand, within DZA65_RS02385at 515.185 kb on - strand, within DZA65_RS02385at 515.185 kb on - strand, within DZA65_RS02385at 515.185 kb on - strand, within DZA65_RS02385at 515.228 kb on + strand, within DZA65_RS02385at 515.228 kb on + strand, within DZA65_RS02385at 515.320 kb on - strand, within DZA65_RS02385at 515.320 kb on - strand, within DZA65_RS02385at 515.328 kb on + strand, within DZA65_RS02385at 515.328 kb on + strand, within DZA65_RS02385at 515.328 kb on + strand, within DZA65_RS02385at 515.328 kb on + strand, within DZA65_RS02385at 515.328 kb on + strand, within DZA65_RS02385at 515.328 kb on + strand, within DZA65_RS02385at 515.328 kb on + strand, within DZA65_RS02385at 515.329 kb on - strand, within DZA65_RS02385at 515.330 kb on + strand, within DZA65_RS02385at 515.330 kb on + strand, within DZA65_RS02385at 515.330 kb on + strand, within DZA65_RS02385at 515.330 kb on + strand, within DZA65_RS02385at 515.330 kb on + strand, within DZA65_RS02385at 515.330 kb on + strand, within DZA65_RS02385at 515.331 kb on - strand, within DZA65_RS02385at 515.331 kb on - strand, within DZA65_RS02385at 515.331 kb on - strand, within DZA65_RS02385at 515.331 kb on - strandat 515.331 kb on - strand, within DZA65_RS02385at 515.352 kb on + strand, within DZA65_RS02385at 515.353 kb on - strand, within DZA65_RS02385at 515.435 kb on + strand, within DZA65_RS02385at 515.435 kb on + strand, within DZA65_RS02385at 515.436 kb on - strand, within DZA65_RS02385at 515.436 kb on - strand, within DZA65_RS02385at 515.600 kb on + strand, within DZA65_RS02385at 515.600 kb on + strand, within DZA65_RS02385at 515.600 kb on + strand, within DZA65_RS02385at 515.600 kb on + strand, within DZA65_RS02385at 515.600 kb on + strand, within DZA65_RS02385at 515.601 kb on - strand, within DZA65_RS02385at 515.601 kb on - strand, within DZA65_RS02385at 515.601 kb on - strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.690 kb on + strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strandat 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strandat 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.691 kb on - strand, within DZA65_RS02385at 515.695 kb on + strand, within DZA65_RS02385at 515.695 kb on + strand, within DZA65_RS02385at 515.695 kb on + strand, within DZA65_RS02385at 515.696 kb on - strand, within DZA65_RS02385at 515.696 kb on - strand, within DZA65_RS02385at 515.696 kb on - strand, within DZA65_RS02385at 515.696 kb on - strand, within DZA65_RS02385at 515.742 kb on + strandat 515.742 kb on + strand, within DZA65_RS02385at 515.742 kb on + strand, within DZA65_RS02385at 515.742 kb on + strand, within DZA65_RS02385at 515.742 kb on + strandat 515.742 kb on + strand, within DZA65_RS02385at 515.742 kb on + strand, within DZA65_RS02385at 515.743 kb on - strand, within DZA65_RS02385at 515.743 kb on - strand, within DZA65_RS02385at 515.743 kb on - strand, within DZA65_RS02385at 515.744 kb on + strand, within DZA65_RS02385at 515.744 kb on + strand, within DZA65_RS02385at 515.744 kb on + strand, within DZA65_RS02385at 515.744 kb on + strand, within DZA65_RS02385at 515.745 kb on - strand, within DZA65_RS02385at 515.745 kb on - strand, within DZA65_RS02385at 515.745 kb on - strand, within DZA65_RS02385at 515.745 kb on - strand, within DZA65_RS02385at 515.745 kb on - strand, within DZA65_RS02385at 515.793 kb on + strandat 515.794 kb on - strandat 515.810 kb on + strandat 515.811 kb on - strandat 515.811 kb on - strandat 515.841 kb on + strandat 515.842 kb on - strandat 515.848 kb on + strandat 515.848 kb on + strandat 515.848 kb on + strandat 515.848 kb on + strandat 515.848 kb on + strandat 515.851 kb on + strandat 515.888 kb on - strandat 515.933 kb on + strandat 515.934 kb on - strandat 515.939 kb on + strandat 515.953 kb on + strandat 515.953 kb on + strandat 515.954 kb on - strandat 515.993 kb on + strand, within DZA65_RS22795at 515.995 kb on + strand, within DZA65_RS22795at 516.085 kb on - strand, within DZA65_RS22795at 516.096 kb on - strand, within DZA65_RS22795at 516.103 kb on - strand, within DZA65_RS22795at 516.106 kb on + strand, within DZA65_RS22795at 516.111 kb on - strand, within DZA65_RS22795at 516.124 kb on - strandat 516.124 kb on - strandat 516.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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515,089 + DZA65_RS02385 0.48 -0.3
515,089 + DZA65_RS02385 0.48 +1.5
515,090 - DZA65_RS02385 0.49 -0.0
515,127 + DZA65_RS02385 0.51 -0.7
515,127 + DZA65_RS02385 0.51 +2.1
515,127 + DZA65_RS02385 0.51 -0.3
515,127 + DZA65_RS02385 0.51 -0.2
515,128 - DZA65_RS02385 0.51 +0.1
515,128 - DZA65_RS02385 0.51 -2.5
515,129 + -0.0
515,129 + DZA65_RS02385 0.51 +0.0
515,129 + DZA65_RS02385 0.51 -0.2
515,129 + DZA65_RS02385 0.51 -0.4
515,129 + DZA65_RS02385 0.51 -2.4
515,129 + DZA65_RS02385 0.51 -0.2
515,129 + DZA65_RS02385 0.51 +0.6
515,129 + DZA65_RS02385 0.51 -1.5
515,129 + DZA65_RS02385 0.51 -0.6
515,129 + DZA65_RS02385 0.51 -0.5
515,129 + DZA65_RS02385 0.51 +0.4
515,129 + DZA65_RS02385 0.51 -0.3
515,130 - DZA65_RS02385 0.51 +1.0
515,130 - DZA65_RS02385 0.51 -2.0
515,130 - DZA65_RS02385 0.51 -0.6
515,130 - DZA65_RS02385 0.51 -1.9
515,130 - DZA65_RS02385 0.51 +0.5
515,130 - DZA65_RS02385 0.51 -1.0
515,130 - DZA65_RS02385 0.51 -0.3
515,130 - DZA65_RS02385 0.51 +0.1
515,130 - DZA65_RS02385 0.51 -0.0
515,130 - DZA65_RS02385 0.51 -1.4
515,130 - DZA65_RS02385 0.51 -0.6
515,130 - DZA65_RS02385 0.51 -0.0
515,130 - DZA65_RS02385 0.51 +0.1
515,130 - DZA65_RS02385 0.51 +0.1
515,130 - DZA65_RS02385 0.51 +0.2
515,130 - DZA65_RS02385 0.51 -0.4
515,130 - DZA65_RS02385 0.51 -1.5
515,130 - DZA65_RS02385 0.51 +0.2
515,130 - DZA65_RS02385 0.51 +0.6
515,130 - DZA65_RS02385 0.51 +0.8
515,130 - DZA65_RS02385 0.51 -0.4
515,177 - DZA65_RS02385 0.54 -1.0
515,177 - DZA65_RS02385 0.54 -0.6
515,184 + DZA65_RS02385 0.54 +1.4
515,184 + DZA65_RS02385 0.54 +1.0
515,184 + DZA65_RS02385 0.54 +1.3
515,184 + DZA65_RS02385 0.54 +0.6
515,184 + DZA65_RS02385 0.54 +0.4
515,185 - DZA65_RS02385 0.55 -0.0
515,185 - DZA65_RS02385 0.55 -1.4
515,185 - DZA65_RS02385 0.55 +0.2
515,185 - DZA65_RS02385 0.55 +1.0
515,228 + DZA65_RS02385 0.57 -2.0
515,228 + DZA65_RS02385 0.57 -0.6
515,320 - DZA65_RS02385 0.63 -0.2
515,320 - DZA65_RS02385 0.63 -0.3
515,328 + DZA65_RS02385 0.64 +0.8
515,328 + DZA65_RS02385 0.64 -0.1
515,328 + DZA65_RS02385 0.64 -0.8
515,328 + DZA65_RS02385 0.64 +1.0
515,328 + DZA65_RS02385 0.64 -1.9
515,328 + DZA65_RS02385 0.64 +0.4
515,328 + DZA65_RS02385 0.64 -0.2
515,329 - DZA65_RS02385 0.64 +1.3
515,330 + DZA65_RS02385 0.64 +0.3
515,330 + DZA65_RS02385 0.64 -1.6
515,330 + DZA65_RS02385 0.64 +1.5
515,330 + DZA65_RS02385 0.64 -0.1
515,330 + DZA65_RS02385 0.64 -0.9
515,330 + DZA65_RS02385 0.64 +0.2
515,331 - DZA65_RS02385 0.64 -1.0
515,331 - DZA65_RS02385 0.64 -1.1
515,331 - DZA65_RS02385 0.64 -0.3
515,331 - +1.0
515,331 - DZA65_RS02385 0.64 -0.5
515,352 + DZA65_RS02385 0.65 -0.0
515,353 - DZA65_RS02385 0.65 -0.6
515,435 + DZA65_RS02385 0.70 -1.0
515,435 + DZA65_RS02385 0.70 -1.5
515,436 - DZA65_RS02385 0.70 +0.0
515,436 - DZA65_RS02385 0.70 -0.3
515,600 + DZA65_RS02385 0.81 -0.0
515,600 + DZA65_RS02385 0.81 -1.0
515,600 + DZA65_RS02385 0.81 -1.0
515,600 + DZA65_RS02385 0.81 +0.4
515,600 + DZA65_RS02385 0.81 -0.0
515,601 - DZA65_RS02385 0.81 +1.1
515,601 - DZA65_RS02385 0.81 +1.0
515,601 - DZA65_RS02385 0.81 +1.0
515,690 + DZA65_RS02385 0.86 -2.7
515,690 + DZA65_RS02385 0.86 -0.1
515,690 + DZA65_RS02385 0.86 -1.4
515,690 + DZA65_RS02385 0.86 -0.0
515,690 + DZA65_RS02385 0.86 -1.4
515,690 + DZA65_RS02385 0.86 -1.0
515,690 + DZA65_RS02385 0.86 -1.9
515,690 + DZA65_RS02385 0.86 -1.9
515,690 + DZA65_RS02385 0.86 -0.0
515,690 + DZA65_RS02385 0.86 -0.6
515,690 + DZA65_RS02385 0.86 -2.7
515,690 + DZA65_RS02385 0.86 +0.2
515,690 + DZA65_RS02385 0.86 -1.4
515,690 + DZA65_RS02385 0.86 +0.9
515,690 + DZA65_RS02385 0.86 -0.6
515,690 + DZA65_RS02385 0.86 +0.4
515,690 + DZA65_RS02385 0.86 +0.3
515,690 + DZA65_RS02385 0.86 -1.0
515,690 + DZA65_RS02385 0.86 +0.5
515,690 + DZA65_RS02385 0.86 +0.6
515,690 + DZA65_RS02385 0.86 -0.9
515,690 + DZA65_RS02385 0.86 -0.2
515,691 - DZA65_RS02385 0.86 +1.0
515,691 - DZA65_RS02385 0.86 +0.1
515,691 - DZA65_RS02385 0.86 +0.0
515,691 - DZA65_RS02385 0.86 -1.6
515,691 - DZA65_RS02385 0.86 +0.7
515,691 - DZA65_RS02385 0.86 -0.2
515,691 - +1.0
515,691 - DZA65_RS02385 0.86 +0.0
515,691 - DZA65_RS02385 0.86 +0.0
515,691 - DZA65_RS02385 0.86 -0.7
515,691 - DZA65_RS02385 0.86 +0.7
515,691 - DZA65_RS02385 0.86 -0.0
515,691 - DZA65_RS02385 0.86 +0.8
515,691 - DZA65_RS02385 0.86 +1.5
515,691 - DZA65_RS02385 0.86 +1.2
515,691 - -0.6
515,691 - DZA65_RS02385 0.86 -0.0
515,691 - DZA65_RS02385 0.86 -0.2
515,691 - DZA65_RS02385 0.86 +1.0
515,691 - DZA65_RS02385 0.86 -0.9
515,691 - DZA65_RS02385 0.86 +0.3
515,691 - DZA65_RS02385 0.86 -1.4
515,691 - DZA65_RS02385 0.86 -0.5
515,695 + DZA65_RS02385 0.87 +0.2
515,695 + DZA65_RS02385 0.87 +0.1
515,695 + DZA65_RS02385 0.87 -0.7
515,696 - DZA65_RS02385 0.87 +1.8
515,696 - DZA65_RS02385 0.87 -0.0
515,696 - DZA65_RS02385 0.87 +0.2
515,696 - DZA65_RS02385 0.87 +0.5
515,742 + -1.0
515,742 + DZA65_RS02385 0.90 +0.6
515,742 + DZA65_RS02385 0.90 -0.0
515,742 + DZA65_RS02385 0.90 +1.6
515,742 + -0.6
515,742 + DZA65_RS02385 0.90 +1.0
515,742 + DZA65_RS02385 0.90 +0.5
515,743 - DZA65_RS02385 0.90 -0.3
515,743 - DZA65_RS02385 0.90 +1.3
515,743 - DZA65_RS02385 0.90 -0.0
515,744 + DZA65_RS02385 0.90 -0.0
515,744 + DZA65_RS02385 0.90 -0.1
515,744 + DZA65_RS02385 0.90 -0.2
515,744 + DZA65_RS02385 0.90 -0.4
515,745 - DZA65_RS02385 0.90 -1.0
515,745 - DZA65_RS02385 0.90 -0.2
515,745 - DZA65_RS02385 0.90 -1.0
515,745 - DZA65_RS02385 0.90 -1.2
515,745 - DZA65_RS02385 0.90 -0.2
515,793 + -0.4
515,794 - -0.6
515,810 + -1.9
515,811 - +0.3
515,811 - +0.8
515,841 + -0.6
515,842 - +1.3
515,848 + +0.1
515,848 + +0.4
515,848 + +0.6
515,848 + -0.1
515,848 + +0.6
515,851 + +0.2
515,888 - -0.2
515,933 + -1.4
515,934 - +0.7
515,939 + -1.0
515,953 + +2.0
515,953 + +0.4
515,954 - -0.0
515,993 + DZA65_RS22795 0.20 +0.7
515,995 + DZA65_RS22795 0.21 +1.0
516,085 - DZA65_RS22795 0.72 +0.6
516,096 - DZA65_RS22795 0.79 -0.0
516,103 - DZA65_RS22795 0.82 +0.0
516,106 + DZA65_RS22795 0.84 -0.4
516,111 - DZA65_RS22795 0.87 +1.0
516,124 - +0.8
516,124 - -0.4
516,124 - +0.3

Or see this region's nucleotide sequence