Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01955 and DZA65_RS22785 are separated by 15 nucleotides DZA65_RS22785 and DZA65_RS01960 are separated by 433 nucleotides DZA65_RS01960 and DZA65_RS01965 are separated by 113 nucleotides
DZA65_RS01955: DZA65_RS01955 - isopentenyl transferase, at 430,632 to 431,351
_RS01955
DZA65_RS22785: DZA65_RS22785 - hypothetical protein, at 431,367 to 431,870
_RS22785
DZA65_RS01960: DZA65_RS01960 - 2-iminobutanoate/2-iminopropanoate deaminase, at 432,304 to 432,690
_RS01960
DZA65_RS01965: DZA65_RS01965 - aspartate carbamoyltransferase regulatory subunit, at 432,804 to 433,268
_RS01965
Position (kb) 431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 430.398 kb on + strand at 430.398 kb on + strand at 430.398 kb on + strand at 430.399 kb on - strand at 430.399 kb on - strand at 430.406 kb on + strand at 430.422 kb on - strand at 430.439 kb on - strand at 430.445 kb on - strand at 430.445 kb on - strand at 430.445 kb on - strand at 430.445 kb on - strand at 430.445 kb on - strand at 430.450 kb on - strand at 430.450 kb on - strand at 430.450 kb on - strand at 430.521 kb on + strand at 430.531 kb on - strand at 430.531 kb on - strand at 430.531 kb on - strand at 430.531 kb on - strand at 430.531 kb on - strand at 430.533 kb on - strand at 430.533 kb on - strand at 430.534 kb on + strand at 430.534 kb on + strand at 430.534 kb on + strand at 430.534 kb on + strand at 430.534 kb on + strand at 430.534 kb on + strand at 430.535 kb on - strand at 430.538 kb on + strand at 430.539 kb on - strand at 430.589 kb on - strand at 430.591 kb on + strand at 430.594 kb on + strand at 430.595 kb on - strand at 430.696 kb on - strand at 430.711 kb on + strand, within DZA65_RS01955 at 430.712 kb on - strand, within DZA65_RS01955 at 430.718 kb on + strand, within DZA65_RS01955 at 430.734 kb on + strand, within DZA65_RS01955 at 430.754 kb on + strand, within DZA65_RS01955 at 430.887 kb on + strand, within DZA65_RS01955 at 430.912 kb on + strand, within DZA65_RS01955 at 430.912 kb on + strand, within DZA65_RS01955 at 431.019 kb on + strand, within DZA65_RS01955 at 431.165 kb on + strand, within DZA65_RS01955 at 431.165 kb on + strand, within DZA65_RS01955 at 431.165 kb on + strand, within DZA65_RS01955 at 431.168 kb on - strand, within DZA65_RS01955 at 431.168 kb on - strand, within DZA65_RS01955 at 431.169 kb on + strand, within DZA65_RS01955 at 431.170 kb on - strand, within DZA65_RS01955 at 431.234 kb on - strand, within DZA65_RS01955 at 431.257 kb on - strand, within DZA65_RS01955 at 431.257 kb on - strand, within DZA65_RS01955 at 431.286 kb on + strand at 431.352 kb on - strand at 431.380 kb on + strand at 431.424 kb on + strand, within DZA65_RS22785 at 431.436 kb on + strand, within DZA65_RS22785 at 431.479 kb on + strand, within DZA65_RS22785 at 431.627 kb on + strand, within DZA65_RS22785 at 431.627 kb on + strand, within DZA65_RS22785 at 431.627 kb on + strand, within DZA65_RS22785 at 431.628 kb on - strand, within DZA65_RS22785 at 431.771 kb on - strand, within DZA65_RS22785 at 431.772 kb on + strand, within DZA65_RS22785 at 431.772 kb on + strand, within DZA65_RS22785 at 431.773 kb on - strand, within DZA65_RS22785 at 431.773 kb on - strand, within DZA65_RS22785 at 431.928 kb on + strand at 431.928 kb on + strand at 431.929 kb on - strand at 431.929 kb on - strand at 431.931 kb on - strand at 431.938 kb on + strand at 432.007 kb on + strand at 432.008 kb on - strand at 432.022 kb on + strand at 432.045 kb on + strand at 432.072 kb on + strand at 432.073 kb on - strand at 432.077 kb on + strand at 432.078 kb on - strand at 432.078 kb on - strand at 432.078 kb on - strand at 432.091 kb on + strand at 432.107 kb on - strand at 432.216 kb on + strand at 432.217 kb on - strand at 432.249 kb on - strand at 432.301 kb on + strand at 432.301 kb on + strand at 432.301 kb on + strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.419 kb on + strand, within DZA65_RS01960 at 432.419 kb on + strand, within DZA65_RS01960 at 432.420 kb on - strand, within DZA65_RS01960 at 432.420 kb on - strand, within DZA65_RS01960 at 432.641 kb on + strand, within DZA65_RS01960 at 432.642 kb on - strand, within DZA65_RS01960 at 432.642 kb on - strand, within DZA65_RS01960 at 432.678 kb on + strand at 432.704 kb on + strand at 432.704 kb on + strand at 432.704 kb on + strand at 432.704 kb on + strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.705 kb on - strand at 432.732 kb on + strand at 432.850 kb on + strand at 432.850 kb on + strand at 432.850 kb on + strand at 432.850 kb on + strand at 432.851 kb on - strand, within DZA65_RS01965 at 432.851 kb on - strand, within DZA65_RS01965
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 430,398 + -0.6 430,398 + -0.6 430,398 + -1.2 430,399 - +0.2 430,399 - -0.4 430,406 + -0.3 430,422 - -0.8 430,439 - +0.7 430,445 - -0.4 430,445 - -1.3 430,445 - +1.6 430,445 - -0.4 430,445 - +0.5 430,450 - -1.2 430,450 - -1.3 430,450 - -0.3 430,521 + -0.2 430,531 - +1.0 430,531 - -0.2 430,531 - -1.6 430,531 - -1.7 430,531 - +0.0 430,533 - -0.2 430,533 - +1.0 430,534 + -0.8 430,534 + -0.4 430,534 + -0.4 430,534 + -0.0 430,534 + +0.6 430,534 + -1.0 430,535 - -0.4 430,538 + -0.6 430,539 - +0.2 430,589 - +0.0 430,591 + +0.4 430,594 + +0.4 430,595 - +0.5 430,696 - +0.4 430,711 + DZA65_RS01955 0.11 +1.3 430,712 - DZA65_RS01955 0.11 -0.6 430,718 + DZA65_RS01955 0.12 -1.0 430,734 + DZA65_RS01955 0.14 +1.0 430,754 + DZA65_RS01955 0.17 -0.5 430,887 + DZA65_RS01955 0.35 -0.3 430,912 + DZA65_RS01955 0.39 -0.2 430,912 + DZA65_RS01955 0.39 +1.9 431,019 + DZA65_RS01955 0.54 -0.2 431,165 + DZA65_RS01955 0.74 -0.2 431,165 + DZA65_RS01955 0.74 +0.6 431,165 + DZA65_RS01955 0.74 +1.6 431,168 - DZA65_RS01955 0.74 -0.8 431,168 - DZA65_RS01955 0.74 +2.0 431,169 + DZA65_RS01955 0.75 -1.4 431,170 - DZA65_RS01955 0.75 +0.6 431,234 - DZA65_RS01955 0.84 -0.2 431,257 - DZA65_RS01955 0.87 +0.0 431,257 - DZA65_RS01955 0.87 +0.1 431,286 + -0.8 431,352 - +0.6 431,380 + +0.1 431,424 + DZA65_RS22785 0.11 -0.6 431,436 + DZA65_RS22785 0.14 +0.5 431,479 + DZA65_RS22785 0.22 +2.6 431,627 + DZA65_RS22785 0.52 +1.0 431,627 + DZA65_RS22785 0.52 -1.0 431,627 + DZA65_RS22785 0.52 +1.4 431,628 - DZA65_RS22785 0.52 +0.1 431,771 - DZA65_RS22785 0.80 -0.9 431,772 + DZA65_RS22785 0.80 +0.2 431,772 + DZA65_RS22785 0.80 -1.2 431,773 - DZA65_RS22785 0.81 +0.5 431,773 - DZA65_RS22785 0.81 +1.0 431,928 + +0.6 431,928 + +0.8 431,929 - +0.2 431,929 - +0.6 431,931 - -0.8 431,938 + +0.5 432,007 + -0.1 432,008 - -0.1 432,022 + +0.6 432,045 + -0.8 432,072 + -3.1 432,073 - -1.6 432,077 + -1.1 432,078 - +0.8 432,078 - -0.1 432,078 - -0.8 432,091 + -0.3 432,107 - -0.5 432,216 + +1.0 432,217 - -1.0 432,249 - -0.8 432,301 + +1.6 432,301 + -1.1 432,301 + +0.9 432,302 - +1.0 432,302 - +1.2 432,302 - -2.9 432,302 - +0.2 432,305 + +0.0 432,305 + +1.3 432,305 + +1.0 432,305 + +0.2 432,305 + +0.1 432,305 + +0.0 432,305 + -0.2 432,305 + -1.2 432,305 + -0.8 432,305 + -0.2 432,305 + +0.7 432,306 - -0.4 432,306 - -0.8 432,306 - -0.3 432,306 - -2.0 432,306 - -1.1 432,306 - -1.3 432,306 - -0.6 432,419 + DZA65_RS01960 0.30 +0.4 432,419 + DZA65_RS01960 0.30 -0.6 432,420 - DZA65_RS01960 0.30 +0.1 432,420 - DZA65_RS01960 0.30 +0.7 432,641 + DZA65_RS01960 0.87 +0.1 432,642 - DZA65_RS01960 0.87 -0.0 432,642 - DZA65_RS01960 0.87 -0.4 432,678 + -0.2 432,704 + -0.2 432,704 + +0.7 432,704 + +0.5 432,704 + +2.3 432,705 - +0.2 432,705 - -0.2 432,705 - -1.0 432,705 - -0.9 432,705 - -1.3 432,705 - -0.4 432,732 + +0.1 432,850 + +0.2 432,850 + +0.3 432,850 + -0.9 432,850 + -1.7 432,851 - DZA65_RS01965 0.10 -0.0 432,851 - DZA65_RS01965 0.10 -0.6
Or see this region's nucleotide sequence