Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17480

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,763,811	+		DZA65_RS17475	0.38	-0.8
3,763,811	+		DZA65_RS17475	0.38	-1.8
3,763,811	+		DZA65_RS17475	0.38	-1.0
3,763,811	+		DZA65_RS17475	0.38	-3.0
3,763,811	+		DZA65_RS17475	0.38	+0.3
3,763,811	+		DZA65_RS17475	0.38	+0.3
3,763,811	+		DZA65_RS17475	0.38	-2.7
3,763,811	+		DZA65_RS17475	0.38	+0.3
3,763,812	-		DZA65_RS17475	0.38	-2.2
3,763,812	-		DZA65_RS17475	0.38	+0.9
3,763,812	-		DZA65_RS17475	0.38	-0.1
3,763,839	+		DZA65_RS17475	0.41	+0.2
3,763,840	-		DZA65_RS17475	0.42	-0.8
3,763,840	-		DZA65_RS17475	0.42	-1.0
3,763,840	-		DZA65_RS17475	0.42	+0.1
3,763,840	-		DZA65_RS17475	0.42	-0.9
3,763,840	-		DZA65_RS17475	0.42	+1.9
3,763,852	+		DZA65_RS17475	0.43	+1.3
3,763,852	+		DZA65_RS17475	0.43	+0.2
3,763,852	+		DZA65_RS17475	0.43	-0.5
3,763,852	+		DZA65_RS17475	0.43	-2.4
3,763,895	+		DZA65_RS17475	0.49	+1.1
3,763,921	+		DZA65_RS17475	0.52	-0.2
3,763,921	+		DZA65_RS17475	0.52	+0.1
3,763,921	+		DZA65_RS17475	0.52	+0.3
3,763,922	-		DZA65_RS17475	0.52	-0.8
3,763,922	-		DZA65_RS17475	0.52	+0.5
3,763,922	-		DZA65_RS17475	0.52	+0.1
3,763,974	+		DZA65_RS17475	0.59	-0.9
3,763,974	+		DZA65_RS17475	0.59	-1.2
3,763,974	+		DZA65_RS17475	0.59	-1.2
3,764,058	+		DZA65_RS17475	0.70	+0.5
3,764,059	-		DZA65_RS17475	0.70	-0.3
3,764,241	+				+0.4
3,764,241	+				-1.2
3,764,242	-				+1.5
3,764,242	-				+1.1
3,764,242	-				-1.8
3,764,260	+				-0.2
3,764,260	+				-0.5
3,764,261	-				+0.8
3,764,281	+				-0.5
3,764,281	+				-1.2
3,764,281	+				+0.1
3,764,310	-				-0.1
3,764,310	-				-1.8
3,764,310	-				-0.0
3,764,330	+				-0.4
3,764,330	+				+1.2
3,764,399	-				-0.1
3,764,487	+				-0.1
3,764,487	+				+0.5
3,764,496	+				-2.6
3,764,496	+				-1.0
3,764,496	+				+0.3
3,764,497	-				+0.5
3,764,502	+				-1.0
3,764,502	+				+0.5
3,764,502	+				+0.5
3,764,503	-				+0.7
3,764,503	-				-1.5
3,764,551	-				-1.0
3,764,555	+				+0.3
3,764,555	+				-1.2
3,764,555	+				+0.2
3,764,555	+				+1.4
3,764,555	+				-1.2
3,764,555	+				+1.9
3,764,555	+				-1.0
3,764,556	-				-0.2
3,764,556	-				-0.9
3,764,621	+				-0.3
3,764,622	-				+0.1
3,764,656	+				+0.6
3,764,656	+				-1.4
3,764,656	+				-0.3
3,764,657	-				+1.4
3,764,657	-				-0.2
3,764,657	-				+0.1
3,764,687	+				-1.3
3,764,688	-				-1.2
3,764,720	+				-0.9
3,764,720	+				-0.4
3,764,721	-				-0.2
3,764,721	-				+0.4
3,764,722	+				+0.2
3,764,778	-				+0.5
3,764,778	-				-0.4
3,764,778	-				-0.8
3,764,803	-				-0.7
3,764,803	-				-0.0
3,764,820	+				+0.9
3,764,822	+				-1.1
3,764,822	+				+1.3
3,764,822	+				+0.2
3,764,822	+				-0.9
3,764,822	+				-0.3
3,764,822	+				-0.8
3,764,822	+				+1.2
3,764,822	+				-1.5
3,764,822	+				+0.3
3,764,822	+				-0.8
3,764,822	+				+0.8
3,764,822	+				+0.4
3,764,822	+				-0.8
3,764,822	+				+0.1
3,764,822	+				+0.3
3,764,822	+				-0.4
3,764,822	+				-0.1
3,764,823	-				-0.1
3,764,823	-				-1.1
3,764,823	-				-0.2
3,764,823	-				-2.2
3,764,823	-				+0.5
3,764,823	-				+0.5
3,764,823	-				-2.1
3,764,823	-				-0.7
3,764,823	-				+1.2
3,764,823	-				+0.8
3,764,823	-				+1.2
3,765,027	+		DZA65_RS17480	0.14	+1.5
3,765,028	-		DZA65_RS17480	0.15	+1.0
3,765,094	-		DZA65_RS17480	0.19	-2.4
3,765,167	+		DZA65_RS17480	0.24	-2.2
3,765,168	-		DZA65_RS17480	0.24	+3.4
3,765,168	-		DZA65_RS17480	0.24	+1.1
3,765,171	-		DZA65_RS17480	0.24	-1.2
3,765,229	+		DZA65_RS17480	0.28	+1.2
3,765,229	+		DZA65_RS17480	0.28	-2.8
3,765,230	-		DZA65_RS17480	0.28	-0.3
3,765,230	-				+0.2
3,765,230	-		DZA65_RS17480	0.28	-1.9
3,765,230	-		DZA65_RS17480	0.28	-0.5
3,765,231	+		DZA65_RS17480	0.28	+0.4
3,765,418	+		DZA65_RS17480	0.40	+1.1
3,765,418	+		DZA65_RS17480	0.40	-1.0
3,765,445	+				-0.2
3,765,445	+		DZA65_RS17480	0.41	+0.3
3,765,478	+		DZA65_RS17480	0.44	+1.2
3,765,478	+		DZA65_RS17480	0.44	-1.1
3,765,478	+		DZA65_RS17480	0.44	+0.6
3,765,478	+		DZA65_RS17480	0.44	+0.9
3,765,478	+		DZA65_RS17480	0.44	-0.0
3,765,478	+		DZA65_RS17480	0.44	-0.2
3,765,479	-		DZA65_RS17480	0.44	+0.4
3,765,479	-		DZA65_RS17480	0.44	+1.4
3,765,479	-		DZA65_RS17480	0.44	-0.7
3,765,479	-				-0.2
3,765,511	+		DZA65_RS17480	0.46	-0.2
3,765,511	+		DZA65_RS17480	0.46	+1.5
3,765,512	-		DZA65_RS17480	0.46	+1.9
3,765,512	-		DZA65_RS17480	0.46	+0.2
3,765,512	-		DZA65_RS17480	0.46	+0.5
3,765,569	+		DZA65_RS17480	0.49	-0.3
3,765,569	+		DZA65_RS17480	0.49	+1.0
3,765,569	+		DZA65_RS17480	0.49	+0.8
3,765,569	+		DZA65_RS17480	0.49	-0.0
3,765,569	+		DZA65_RS17480	0.49	-0.1
3,765,570	-		DZA65_RS17480	0.50	-1.3
3,765,592	+		DZA65_RS17480	0.51	+0.9
3,765,592	+		DZA65_RS17480	0.51	+1.8
3,765,593	-		DZA65_RS17480	0.51	-0.2
3,765,593	-		DZA65_RS17480	0.51	+0.1
3,765,593	-		DZA65_RS17480	0.51	+0.5
3,765,593	-		DZA65_RS17480	0.51	+0.2
3,765,640	+		DZA65_RS17480	0.54	-0.2
3,765,658	+		DZA65_RS17480	0.55	+0.5
3,765,658	+		DZA65_RS17480	0.55	+0.5
3,765,658	+		DZA65_RS17480	0.55	+1.3
3,765,659	-		DZA65_RS17480	0.55	-1.5
3,765,659	-		DZA65_RS17480	0.55	-1.7
3,765,659	-		DZA65_RS17480	0.55	-0.8
3,765,659	-		DZA65_RS17480	0.55	+0.2
3,765,659	-		DZA65_RS17480	0.55	+1.1
3,765,659	-		DZA65_RS17480	0.55	-0.1
3,765,784	-		DZA65_RS17480	0.63	-0.7
3,765,887	-		DZA65_RS17480	0.70	-2.0
3,765,904	+		DZA65_RS17480	0.71	+1.5
3,765,904	+		DZA65_RS17480	0.71	+0.6
3,766,008	+		DZA65_RS17480	0.78	-1.4
3,766,008	+		DZA65_RS17480	0.78	+0.4
3,766,008	+		DZA65_RS17480	0.78	-0.1
3,766,021	+		DZA65_RS17480	0.79	+0.2
3,766,021	+		DZA65_RS17480	0.79	-1.5
3,766,022	-		DZA65_RS17480	0.79	-0.7
3,766,022	-		DZA65_RS17480	0.79	+0.8
3,766,071	+		DZA65_RS17480	0.82	+1.4
3,766,071	+		DZA65_RS17480	0.82	+0.5
3,766,131	+		DZA65_RS17480	0.86	+0.3
3,766,131	+		DZA65_RS17480	0.86	+0.3
3,766,131	+		DZA65_RS17480	0.86	-1.0
3,766,150	+		DZA65_RS17480	0.87	+0.1
3,766,151	-		DZA65_RS17480	0.87	+0.4
3,766,151	-		DZA65_RS17480	0.87	+1.4
3,766,159	+		DZA65_RS17480	0.88	+2.4
3,766,159	+		DZA65_RS17480	0.88	-0.4
3,766,159	+		DZA65_RS17480	0.88	+0.6
3,766,160	-		DZA65_RS17480	0.88	+0.1
3,766,160	-		DZA65_RS17480	0.88	-0.9
3,766,160	-		DZA65_RS17480	0.88	+0.2
3,766,160	-		DZA65_RS17480	0.88	+0.1
3,766,160	-		DZA65_RS17480	0.88	-0.5
3,766,160	-		DZA65_RS17480	0.88	-0.2
3,766,249	+				-0.6
3,766,255	+				-1.5
3,766,255	+				-0.5
3,766,255	+				-1.5
3,766,255	+				-0.6
3,766,256	-				-1.2
3,766,256	-				-1.0
3,766,256	-				+1.5
3,766,256	-				-0.2
3,766,273	+				+0.0
3,766,274	-				+0.6
3,766,274	-				+0.5
3,766,314	+				-0.0
3,766,315	-				+1.4
3,766,348	+				-0.8
3,766,349	-				-1.6
3,766,349	-				-0.9
3,766,349	-				+0.6
3,766,349	-				+1.0
3,766,349	-				-0.8
3,766,564	+		DZA65_RS17485	0.26	+0.9
3,766,564	+		DZA65_RS17485	0.26	+0.8
3,766,565	-		DZA65_RS17485	0.26	-0.4
3,766,565	-		DZA65_RS17485	0.26	-0.1
3,766,565	-		DZA65_RS17485	0.26	+0.6
3,766,565	-		DZA65_RS17485	0.26	-0.8
3,766,628	-		DZA65_RS17485	0.37	+1.9
3,766,630	-		DZA65_RS17485	0.37	+0.4
3,766,638	+		DZA65_RS17485	0.39	-0.2
3,766,638	+		DZA65_RS17485	0.39	+0.8
3,766,638	+		DZA65_RS17485	0.39	+1.5
3,766,681	+		DZA65_RS17485	0.46	+0.2
3,766,681	+		DZA65_RS17485	0.46	+0.2
3,766,682	-		DZA65_RS17485	0.46	-1.5
3,766,693	+		DZA65_RS17485	0.48	-0.3
3,766,694	-		DZA65_RS17485	0.48	+0.4
3,766,870	+		DZA65_RS17485	0.78	-0.4
3,766,870	+		DZA65_RS17485	0.78	+1.4
3,766,870	+		DZA65_RS17485	0.78	-0.3
3,766,870	+		DZA65_RS17485	0.78	-0.8
3,766,870	+		DZA65_RS17485	0.78	+1.2
3,766,870	+		DZA65_RS17485	0.78	+0.5
3,766,870	+		DZA65_RS17485	0.78	+0.1
3,766,871	-		DZA65_RS17485	0.78	+0.5
3,766,871	-		DZA65_RS17485	0.78	-1.1
3,766,871	-		DZA65_RS17485	0.78	+0.8
3,766,871	-		DZA65_RS17485	0.78	+0.1
3,766,871	-		DZA65_RS17485	0.78	-0.7
3,766,871	-		DZA65_RS17485	0.78	-0.8
3,766,871	-		DZA65_RS17485	0.78	-0.0
3,766,871	-		DZA65_RS17485	0.78	-1.4
3,766,871	-		DZA65_RS17485	0.78	+0.9
3,766,871	-		DZA65_RS17485	0.78	+0.8
3,766,871	-				+0.8
3,766,985	+				+1.2
3,766,985	+				+0.4
3,766,985	+				+1.4
3,766,986	-				-2.5
3,766,986	-				-0.2
3,766,986	-				-0.2
3,766,986	-				-0.1
3,766,986	-				-0.3
3,767,014	+				+0.9
3,767,019	+				+0.5
3,767,020	-				+0.8
3,767,020	-				+0.6
3,767,064	+				+0.8
3,767,064	+				-0.5
3,767,064	+				-0.1
3,767,083	+				-2.5
3,767,084	-				-0.2
3,767,107	+		DZA65_RS22970	0.22	+0.9
3,767,108	-		DZA65_RS22970	0.23	+0.8
3,767,108	-		DZA65_RS22970	0.23	-2.2
3,767,150	-		DZA65_RS22970	0.67	-0.1
3,767,155	+		DZA65_RS22970	0.72	+0.4
3,767,159	+		DZA65_RS22970	0.76	+0.2
3,767,181	+				-1.4
3,767,181	+				+0.4
3,767,181	+				+3.4
3,767,181	+				-0.8
3,767,181	+				+1.2
3,767,181	+				-0.2
3,767,181	+				-0.8
3,767,182	-				-0.8
3,767,182	-				-0.4
3,767,182	-				+0.7
3,767,182	-				-0.8
3,767,192	+				-0.2
3,767,192	+				+0.9
3,767,192	+				-0.3
3,767,192	+				+0.3
3,767,192	+				+0.8
3,767,192	+				-0.7
3,767,192	+				+0.5
3,767,192	+				+0.2
3,767,192	+				-0.3
3,767,193	-				-0.5
3,767,193	-				+0.6
3,767,193	-				+0.5
3,767,193	-				-0.9
3,767,193	-				-0.5
3,767,193	-				+0.2
3,767,193	-				-0.8
3,767,193	-				+0.6
3,767,193	-				-0.5
3,767,193	-				+0.7
3,767,193	-				+0.8
3,767,193	-				-2.4
3,767,210	+				+0.8
3,767,211	-				+1.3
3,767,228	+				+0.2
3,767,232	+				+0.2
3,767,233	-				+1.4
3,767,233	-				-1.5
3,767,233	-				+1.0
3,767,247	+				+0.5
3,767,247	+				+1.2
3,767,247	+				-1.4
3,767,286	-				+0.8