Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS15285 and DZA65_RS15290 are separated by 111 nucleotides DZA65_RS15290 and DZA65_RS15295 are separated by 90 nucleotides DZA65_RS15295 and DZA65_RS15300 are separated by 247 nucleotides
DZA65_RS15285: DZA65_RS15285 - phosphate acetyltransferase, at 3,315,194 to 3,317,335
_RS15285
DZA65_RS15290: DZA65_RS15290 - NUDIX hydrolase YfcD, at 3,317,447 to 3,318,061
_RS15290
DZA65_RS15295: DZA65_RS15295 - phosphodiesterase, at 3,318,152 to 3,318,703
_RS15295
DZA65_RS15300: DZA65_RS15300 - GSH-dependent disulfide bond oxidoreductase, at 3,318,951 to 3,319,580
_RS15300
Position (kb) 3317
3318
3319 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3316.488 kb on + strand, within DZA65_RS15285 at 3316.564 kb on - strand, within DZA65_RS15285 at 3316.593 kb on - strand at 3316.596 kb on + strand at 3316.597 kb on - strand, within DZA65_RS15285 at 3316.630 kb on + strand, within DZA65_RS15285 at 3316.630 kb on + strand, within DZA65_RS15285 at 3316.631 kb on - strand, within DZA65_RS15285 at 3316.739 kb on - strand, within DZA65_RS15285 at 3316.845 kb on - strand, within DZA65_RS15285 at 3317.070 kb on - strand, within DZA65_RS15285 at 3317.181 kb on - strand at 3317.191 kb on - strand at 3317.242 kb on + strand at 3317.291 kb on + strand at 3317.374 kb on + strand at 3317.375 kb on - strand at 3317.375 kb on - strand at 3317.375 kb on - strand at 3317.375 kb on - strand at 3317.425 kb on + strand at 3317.436 kb on + strand at 3317.437 kb on - strand at 3317.539 kb on - strand, within DZA65_RS15290 at 3317.690 kb on + strand, within DZA65_RS15290 at 3317.690 kb on + strand, within DZA65_RS15290 at 3317.690 kb on + strand, within DZA65_RS15290 at 3317.690 kb on + strand, within DZA65_RS15290 at 3317.691 kb on - strand, within DZA65_RS15290 at 3317.691 kb on - strand, within DZA65_RS15290 at 3317.691 kb on - strand, within DZA65_RS15290 at 3317.691 kb on - strand, within DZA65_RS15290 at 3317.691 kb on - strand, within DZA65_RS15290 at 3317.736 kb on + strand, within DZA65_RS15290 at 3317.739 kb on + strand, within DZA65_RS15290 at 3317.927 kb on + strand, within DZA65_RS15290 at 3317.927 kb on + strand, within DZA65_RS15290 at 3317.927 kb on + strand, within DZA65_RS15290 at 3317.927 kb on + strand, within DZA65_RS15290 at 3317.927 kb on + strand, within DZA65_RS15290 at 3317.928 kb on - strand, within DZA65_RS15290 at 3317.928 kb on - strand, within DZA65_RS15290 at 3317.928 kb on - strand, within DZA65_RS15290 at 3317.928 kb on - strand, within DZA65_RS15290 at 3317.928 kb on - strand, within DZA65_RS15290 at 3317.928 kb on - strand, within DZA65_RS15290 at 3317.928 kb on - strand, within DZA65_RS15290 at 3317.937 kb on + strand, within DZA65_RS15290 at 3317.937 kb on + strand, within DZA65_RS15290 at 3317.937 kb on + strand, within DZA65_RS15290 at 3317.937 kb on + strand, within DZA65_RS15290 at 3317.937 kb on + strand, within DZA65_RS15290 at 3317.937 kb on + strand, within DZA65_RS15290 at 3317.937 kb on + strand, within DZA65_RS15290 at 3317.937 kb on + strand, within DZA65_RS15290 at 3317.938 kb on - strand, within DZA65_RS15290 at 3317.938 kb on - strand, within DZA65_RS15290 at 3317.938 kb on - strand, within DZA65_RS15290 at 3317.938 kb on - strand, within DZA65_RS15290 at 3317.941 kb on + strand, within DZA65_RS15290 at 3317.942 kb on - strand, within DZA65_RS15290 at 3317.995 kb on + strand, within DZA65_RS15290 at 3317.996 kb on - strand, within DZA65_RS15290 at 3318.123 kb on - strand at 3318.123 kb on - strand at 3318.123 kb on - strand at 3318.123 kb on - strand at 3318.130 kb on + strand at 3318.130 kb on + strand at 3318.130 kb on + strand at 3318.130 kb on + strand at 3318.130 kb on + strand at 3318.130 kb on + strand at 3318.130 kb on + strand at 3318.130 kb on + strand at 3318.130 kb on + strand at 3318.130 kb on + strand at 3318.131 kb on - strand at 3318.131 kb on - strand at 3318.131 kb on - strand at 3318.131 kb on - strand at 3318.131 kb on - strand at 3318.131 kb on - strand at 3318.131 kb on - strand at 3318.131 kb on - strand at 3318.142 kb on - strand at 3318.142 kb on - strand at 3318.142 kb on - strand at 3318.149 kb on - strand at 3318.153 kb on + strand at 3318.178 kb on + strand at 3318.288 kb on + strand, within DZA65_RS15295 at 3318.288 kb on + strand, within DZA65_RS15295 at 3318.288 kb on + strand, within DZA65_RS15295 at 3318.288 kb on + strand, within DZA65_RS15295 at 3318.288 kb on + strand, within DZA65_RS15295 at 3318.288 kb on + strand, within DZA65_RS15295 at 3318.288 kb on + strand, within DZA65_RS15295 at 3318.289 kb on - strand, within DZA65_RS15295 at 3318.289 kb on - strand, within DZA65_RS15295 at 3318.289 kb on - strand, within DZA65_RS15295 at 3318.289 kb on - strand, within DZA65_RS15295 at 3318.289 kb on - strand, within DZA65_RS15295 at 3318.289 kb on - strand, within DZA65_RS15295 at 3318.289 kb on - strand, within DZA65_RS15295 at 3318.292 kb on + strand, within DZA65_RS15295 at 3318.292 kb on + strand, within DZA65_RS15295 at 3318.292 kb on + strand, within DZA65_RS15295 at 3318.292 kb on + strand, within DZA65_RS15295 at 3318.293 kb on - strand, within DZA65_RS15295 at 3318.293 kb on - strand, within DZA65_RS15295 at 3318.293 kb on - strand, within DZA65_RS15295 at 3318.293 kb on - strand, within DZA65_RS15295 at 3318.293 kb on - strand, within DZA65_RS15295 at 3318.293 kb on - strand, within DZA65_RS15295 at 3318.293 kb on - strand, within DZA65_RS15295 at 3318.382 kb on - strand, within DZA65_RS15295 at 3318.382 kb on - strand, within DZA65_RS15295 at 3318.382 kb on - strand, within DZA65_RS15295 at 3318.404 kb on + strand, within DZA65_RS15295 at 3318.404 kb on + strand, within DZA65_RS15295 at 3318.490 kb on + strand, within DZA65_RS15295 at 3318.506 kb on - strand, within DZA65_RS15295 at 3318.589 kb on + strand, within DZA65_RS15295 at 3318.590 kb on - strand, within DZA65_RS15295 at 3318.590 kb on - strand, within DZA65_RS15295 at 3318.605 kb on + strand, within DZA65_RS15295 at 3318.606 kb on - strand, within DZA65_RS15295 at 3318.709 kb on + strand at 3318.710 kb on - strand at 3318.710 kb on - strand at 3318.710 kb on - strand at 3318.727 kb on + strand at 3318.727 kb on + strand at 3318.727 kb on + strand at 3318.727 kb on + strand at 3318.728 kb on - strand at 3318.741 kb on - strand at 3318.742 kb on + strand at 3318.742 kb on + strand at 3318.742 kb on + strand at 3318.742 kb on + strand at 3318.742 kb on + strand at 3318.742 kb on + strand at 3318.742 kb on + strand at 3318.742 kb on + strand at 3318.742 kb on + strand at 3318.742 kb on + strand at 3318.742 kb on + strand at 3318.743 kb on - strand at 3318.743 kb on - strand at 3318.743 kb on - strand at 3318.743 kb on - strand at 3318.743 kb on - strand at 3318.743 kb on - strand at 3318.746 kb on - strand at 3318.756 kb on + strand at 3318.756 kb on + strand at 3318.757 kb on - strand at 3318.757 kb on - strand at 3318.778 kb on - strand at 3318.827 kb on - strand at 3318.837 kb on + strand at 3318.850 kb on + strand at 3318.850 kb on + strand at 3318.850 kb on + strand at 3318.854 kb on + strand at 3318.854 kb on + strand at 3318.854 kb on + strand at 3318.855 kb on - strand at 3318.855 kb on - strand at 3318.855 kb on - strand at 3318.855 kb on - strand at 3318.855 kb on - strand at 3318.855 kb on - strand at 3318.855 kb on - strand at 3318.876 kb on + strand at 3318.963 kb on + strand at 3318.963 kb on + strand at 3318.963 kb on + strand at 3318.963 kb on + strand at 3318.963 kb on + strand at 3318.963 kb on + strand at 3318.963 kb on + strand at 3318.963 kb on + strand at 3318.963 kb on + strand at 3318.964 kb on - strand at 3318.964 kb on - strand at 3318.964 kb on - strand at 3318.964 kb on - strand at 3318.964 kb on - strand at 3318.964 kb on - strand at 3318.964 kb on - strand at 3318.964 kb on - strand at 3318.964 kb on - strand at 3318.964 kb on - strand at 3318.964 kb on - strand at 3318.966 kb on + strand at 3318.967 kb on - strand at 3318.967 kb on - strand at 3318.967 kb on - strand at 3318.967 kb on - strand at 3319.021 kb on + strand, within DZA65_RS15300 at 3319.021 kb on + strand, within DZA65_RS15300 at 3319.021 kb on + strand, within DZA65_RS15300 at 3319.021 kb on + strand, within DZA65_RS15300 at 3319.021 kb on + strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.022 kb on - strand, within DZA65_RS15300 at 3319.026 kb on + strand, within DZA65_RS15300 at 3319.026 kb on + strand, within DZA65_RS15300 at 3319.026 kb on + strand, within DZA65_RS15300
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 3,316,488 + DZA65_RS15285 0.60 -0.4 3,316,564 - DZA65_RS15285 0.64 -1.4 3,316,593 - -1.7 3,316,596 + -1.7 3,316,597 - DZA65_RS15285 0.65 -0.4 3,316,630 + DZA65_RS15285 0.67 -2.0 3,316,630 + DZA65_RS15285 0.67 -2.7 3,316,631 - DZA65_RS15285 0.67 +0.0 3,316,739 - DZA65_RS15285 0.72 +0.6 3,316,845 - DZA65_RS15285 0.77 -1.0 3,317,070 - DZA65_RS15285 0.88 -1.5 3,317,181 - -1.4 3,317,191 - +0.6 3,317,242 + -2.9 3,317,291 + +0.4 3,317,374 + -0.3 3,317,375 - -1.6 3,317,375 - +0.3 3,317,375 - -1.3 3,317,375 - +0.0 3,317,425 + +1.8 3,317,436 + -0.1 3,317,437 - -0.6 3,317,539 - DZA65_RS15290 0.15 +0.9 3,317,690 + DZA65_RS15290 0.40 +0.0 3,317,690 + DZA65_RS15290 0.40 -0.4 3,317,690 + DZA65_RS15290 0.40 -0.1 3,317,690 + DZA65_RS15290 0.40 -0.1 3,317,691 - DZA65_RS15290 0.40 -0.5 3,317,691 - DZA65_RS15290 0.40 -1.2 3,317,691 - DZA65_RS15290 0.40 +1.6 3,317,691 - DZA65_RS15290 0.40 -2.2 3,317,691 - DZA65_RS15290 0.40 +0.0 3,317,736 + DZA65_RS15290 0.47 -0.4 3,317,739 + DZA65_RS15290 0.47 -1.7 3,317,927 + DZA65_RS15290 0.78 +1.4 3,317,927 + DZA65_RS15290 0.78 -1.1 3,317,927 + DZA65_RS15290 0.78 -1.2 3,317,927 + DZA65_RS15290 0.78 -1.4 3,317,927 + DZA65_RS15290 0.78 +0.8 3,317,928 - DZA65_RS15290 0.78 -1.0 3,317,928 - DZA65_RS15290 0.78 -1.7 3,317,928 - DZA65_RS15290 0.78 -0.8 3,317,928 - DZA65_RS15290 0.78 -1.6 3,317,928 - DZA65_RS15290 0.78 -0.1 3,317,928 - DZA65_RS15290 0.78 -0.4 3,317,928 - DZA65_RS15290 0.78 -0.7 3,317,937 + DZA65_RS15290 0.80 +0.8 3,317,937 + DZA65_RS15290 0.80 +2.1 3,317,937 + DZA65_RS15290 0.80 -0.3 3,317,937 + DZA65_RS15290 0.80 +0.6 3,317,937 + DZA65_RS15290 0.80 -1.1 3,317,937 + DZA65_RS15290 0.80 -0.2 3,317,937 + DZA65_RS15290 0.80 +0.0 3,317,937 + DZA65_RS15290 0.80 -1.0 3,317,938 - DZA65_RS15290 0.80 +1.0 3,317,938 - DZA65_RS15290 0.80 -1.1 3,317,938 - DZA65_RS15290 0.80 -0.9 3,317,938 - DZA65_RS15290 0.80 +0.5 3,317,941 + DZA65_RS15290 0.80 +0.3 3,317,942 - DZA65_RS15290 0.80 -0.7 3,317,995 + DZA65_RS15290 0.89 -2.0 3,317,996 - DZA65_RS15290 0.89 +0.0 3,318,123 - +1.6 3,318,123 - +2.0 3,318,123 - -0.5 3,318,123 - +1.7 3,318,130 + +0.4 3,318,130 + -0.4 3,318,130 + +1.3 3,318,130 + -0.2 3,318,130 + +0.6 3,318,130 + -2.0 3,318,130 + -0.1 3,318,130 + +0.4 3,318,130 + -0.3 3,318,130 + -1.0 3,318,131 - +2.1 3,318,131 - +1.4 3,318,131 - +1.2 3,318,131 - +1.7 3,318,131 - -1.6 3,318,131 - +0.6 3,318,131 - +0.6 3,318,131 - -0.0 3,318,142 - +0.5 3,318,142 - -0.4 3,318,142 - +0.9 3,318,149 - +0.1 3,318,153 + +0.6 3,318,178 + -1.0 3,318,288 + DZA65_RS15295 0.25 -0.3 3,318,288 + DZA65_RS15295 0.25 -0.1 3,318,288 + DZA65_RS15295 0.25 +0.0 3,318,288 + DZA65_RS15295 0.25 -2.0 3,318,288 + DZA65_RS15295 0.25 -2.0 3,318,288 + DZA65_RS15295 0.25 +0.9 3,318,288 + DZA65_RS15295 0.25 -0.4 3,318,289 - DZA65_RS15295 0.25 +0.8 3,318,289 - DZA65_RS15295 0.25 -0.5 3,318,289 - DZA65_RS15295 0.25 -1.0 3,318,289 - DZA65_RS15295 0.25 +1.0 3,318,289 - DZA65_RS15295 0.25 +0.0 3,318,289 - DZA65_RS15295 0.25 +1.6 3,318,289 - DZA65_RS15295 0.25 -0.2 3,318,292 + DZA65_RS15295 0.25 -0.4 3,318,292 + DZA65_RS15295 0.25 -1.1 3,318,292 + DZA65_RS15295 0.25 -0.8 3,318,292 + DZA65_RS15295 0.25 +0.4 3,318,293 - DZA65_RS15295 0.26 +0.0 3,318,293 - DZA65_RS15295 0.26 -1.0 3,318,293 - DZA65_RS15295 0.26 -0.8 3,318,293 - DZA65_RS15295 0.26 -0.1 3,318,293 - DZA65_RS15295 0.26 -2.0 3,318,293 - DZA65_RS15295 0.26 +0.0 3,318,293 - DZA65_RS15295 0.26 -0.4 3,318,382 - DZA65_RS15295 0.42 +0.4 3,318,382 - DZA65_RS15295 0.42 +1.6 3,318,382 - DZA65_RS15295 0.42 +0.4 3,318,404 + DZA65_RS15295 0.46 +0.6 3,318,404 + DZA65_RS15295 0.46 -0.9 3,318,490 + DZA65_RS15295 0.61 +1.4 3,318,506 - DZA65_RS15295 0.64 -1.4 3,318,589 + DZA65_RS15295 0.79 +1.1 3,318,590 - DZA65_RS15295 0.79 +0.1 3,318,590 - DZA65_RS15295 0.79 +0.0 3,318,605 + DZA65_RS15295 0.82 +0.0 3,318,606 - DZA65_RS15295 0.82 +0.0 3,318,709 + -0.4 3,318,710 - +0.9 3,318,710 - +1.3 3,318,710 - -1.7 3,318,727 + -0.6 3,318,727 + +0.2 3,318,727 + -1.0 3,318,727 + +0.6 3,318,728 - +1.1 3,318,741 - -0.1 3,318,742 + -0.0 3,318,742 + -1.2 3,318,742 + +0.5 3,318,742 + -0.4 3,318,742 + +0.9 3,318,742 + -0.8 3,318,742 + +0.2 3,318,742 + +0.6 3,318,742 + +0.3 3,318,742 + -0.7 3,318,742 + +0.8 3,318,743 - -1.0 3,318,743 - +0.4 3,318,743 - -1.4 3,318,743 - -0.4 3,318,743 - +0.5 3,318,743 - -0.6 3,318,746 - +0.3 3,318,756 + -0.7 3,318,756 + +0.0 3,318,757 - +0.6 3,318,757 - -1.0 3,318,778 - -0.1 3,318,827 - -3.1 3,318,837 + +0.6 3,318,850 + -0.9 3,318,850 + -1.2 3,318,850 + +1.0 3,318,854 + +0.6 3,318,854 + +0.6 3,318,854 + +1.0 3,318,855 - -0.4 3,318,855 - -0.4 3,318,855 - -0.0 3,318,855 - -1.3 3,318,855 - -0.7 3,318,855 - +0.1 3,318,855 - -0.1 3,318,876 + -0.2 3,318,963 + -0.8 3,318,963 + +2.0 3,318,963 + -0.1 3,318,963 + -0.6 3,318,963 + -0.7 3,318,963 + +0.4 3,318,963 + -0.1 3,318,963 + +0.4 3,318,963 + -0.6 3,318,964 - -0.1 3,318,964 - +1.0 3,318,964 - +0.0 3,318,964 - -0.7 3,318,964 - -0.1 3,318,964 - -0.4 3,318,964 - +1.3 3,318,964 - -1.7 3,318,964 - -1.0 3,318,964 - +0.3 3,318,964 - -0.5 3,318,966 + -1.7 3,318,967 - +0.2 3,318,967 - -1.4 3,318,967 - +0.5 3,318,967 - -1.6 3,319,021 + DZA65_RS15300 0.11 +1.2 3,319,021 + DZA65_RS15300 0.11 +0.0 3,319,021 + DZA65_RS15300 0.11 +0.0 3,319,021 + DZA65_RS15300 0.11 +0.6 3,319,021 + DZA65_RS15300 0.11 +0.1 3,319,022 - DZA65_RS15300 0.11 -1.6 3,319,022 - DZA65_RS15300 0.11 +0.4 3,319,022 - DZA65_RS15300 0.11 +0.0 3,319,022 - DZA65_RS15300 0.11 -0.5 3,319,022 - DZA65_RS15300 0.11 -0.1 3,319,022 - DZA65_RS15300 0.11 -0.6 3,319,022 - DZA65_RS15300 0.11 -0.1 3,319,022 - DZA65_RS15300 0.11 -0.1 3,319,022 - DZA65_RS15300 0.11 +1.3 3,319,022 - DZA65_RS15300 0.11 +0.4 3,319,022 - DZA65_RS15300 0.11 +0.5 3,319,022 - DZA65_RS15300 0.11 -0.5 3,319,026 + DZA65_RS15300 0.12 +1.0 3,319,026 + DZA65_RS15300 0.12 +0.6 3,319,026 + DZA65_RS15300 0.12 -0.4
Or see this region's nucleotide sequence