Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10875

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,301,210	+				-1.7
2,301,210	+				-2.1
2,301,211	-				-0.2
2,301,273	-				+1.1
2,301,291	-				+0.3
2,301,440	+		DZA65_RS10870	0.20	-1.0
2,301,441	-		DZA65_RS10870	0.20	-0.7
2,301,441	-		DZA65_RS10870	0.20	-2.4
2,301,441	-		DZA65_RS10870	0.20	-0.3
2,301,464	+		DZA65_RS10870	0.23	+0.3
2,301,464	+		DZA65_RS10870	0.23	-0.4
2,301,464	+		DZA65_RS10870	0.23	+2.5
2,301,464	+		DZA65_RS10870	0.23	+4.2
2,301,465	-		DZA65_RS10870	0.23	-0.5
2,301,465	-		DZA65_RS10870	0.23	-0.5
2,301,485	+		DZA65_RS10870	0.25	-1.1
2,301,485	+		DZA65_RS10870	0.25	+0.8
2,301,485	+		DZA65_RS10870	0.25	-0.4
2,301,486	-		DZA65_RS10870	0.25	-0.2
2,301,486	-		DZA65_RS10870	0.25	+1.3
2,301,501	+		DZA65_RS10870	0.27	-2.5
2,301,502	-		DZA65_RS10870	0.27	-0.7
2,301,505	+		DZA65_RS10870	0.28	-1.7
2,301,505	+		DZA65_RS10870	0.28	-0.9
2,301,505	+		DZA65_RS10870	0.28	-0.5
2,301,506	-		DZA65_RS10870	0.28	-0.1
2,301,506	-		DZA65_RS10870	0.28	-0.9
2,301,560	+		DZA65_RS10870	0.34	+0.3
2,301,561	-		DZA65_RS10870	0.34	-0.3
2,301,618	+		DZA65_RS10870	0.40	+0.3
2,301,618	+		DZA65_RS10870	0.40	-0.1
2,301,618	+		DZA65_RS10870	0.40	+0.0
2,301,619	-		DZA65_RS10870	0.40	+0.6
2,301,637	-		DZA65_RS10870	0.42	-2.5
2,301,743	+		DZA65_RS10870	0.54	-0.9
2,301,743	+		DZA65_RS10870	0.54	-0.9
2,301,744	-		DZA65_RS10870	0.54	+0.2
2,301,830	+		DZA65_RS10870	0.63	-1.6
2,301,830	+		DZA65_RS10870	0.63	-1.5
2,301,927	+		DZA65_RS10870	0.74	-1.2
2,301,928	-		DZA65_RS10870	0.74	+0.5
2,301,928	-		DZA65_RS10870	0.74	+2.3
2,302,041	-		DZA65_RS10870	0.86	-0.7
2,302,074	+				-2.0
2,302,075	-				+0.1
2,302,176	+				+0.1
2,302,177	-				+1.0
2,302,188	+				-0.9
2,302,188	+				+1.7
2,302,188	+				+0.5
2,302,189	-				+0.2
2,302,189	-				+1.0
2,302,236	-				-0.5
2,302,236	-				-0.7
2,302,282	-		DZA65_RS10875	0.10	-1.8
2,302,282	-		DZA65_RS10875	0.10	-2.2
2,302,338	+		DZA65_RS10875	0.16	-0.4
2,302,514	-		DZA65_RS10875	0.34	-1.1
2,302,570	-		DZA65_RS10875	0.39	-1.1
2,302,600	-		DZA65_RS10875	0.42	-2.0
2,302,638	+		DZA65_RS10875	0.46	-0.2
2,302,639	-		DZA65_RS10875	0.46	+0.3
2,302,639	-		DZA65_RS10875	0.46	-0.3
2,302,821	+		DZA65_RS10875	0.65	-0.1
2,302,857	+		DZA65_RS10875	0.68	+0.5
2,302,871	+				-0.2
2,302,871	+		DZA65_RS10875	0.70	+0.6
2,302,871	+		DZA65_RS10875	0.70	+0.9
2,302,872	-		DZA65_RS10875	0.70	+0.5
2,302,882	+		DZA65_RS10875	0.71	+0.8
2,302,882	+		DZA65_RS10875	0.71	-2.1
2,302,882	+		DZA65_RS10875	0.71	+0.1
2,302,882	+				+0.9
2,302,882	+		DZA65_RS10875	0.71	-0.7
2,302,883	-		DZA65_RS10875	0.71	-2.5
2,302,883	-		DZA65_RS10875	0.71	-1.1
2,302,903	+		DZA65_RS10875	0.73	-0.6
2,302,903	+		DZA65_RS10875	0.73	-2.5
2,302,945	+		DZA65_RS10875	0.77	-2.5
2,302,946	-		DZA65_RS10875	0.77	-0.4
2,303,162	+				-2.2
2,303,162	+				-0.2
2,303,162	+				-0.7
2,303,162	+				-0.3
2,303,162	+				+0.0
2,303,163	-				-1.5
2,303,163	-				-0.7
2,303,163	-				-0.4
2,303,163	-				+0.3
2,303,163	-				+2.1
2,303,163	-				-2.2
2,303,163	-				-1.2
2,303,163	-				+0.0
2,303,163	-				+0.3
2,303,163	-				+0.3
2,303,163	-				-0.4
2,303,165	+				-0.1
2,303,165	+				-1.4
2,303,165	+				-1.0
2,303,165	+				+0.3
2,303,192	-				-0.0
2,303,304	+		DZA65_RS10880	0.14	+1.3
2,303,402	+		DZA65_RS10880	0.23	+0.5
2,303,403	-		DZA65_RS10880	0.24	-1.7
2,303,403	-		DZA65_RS10880	0.24	+0.6
2,303,403	-		DZA65_RS10880	0.24	-1.7
2,303,405	+		DZA65_RS10880	0.24	+0.5
2,303,405	+		DZA65_RS10880	0.24	-0.0
2,303,405	+		DZA65_RS10880	0.24	+2.3
2,303,405	+		DZA65_RS10880	0.24	-0.4
2,303,406	-		DZA65_RS10880	0.24	+0.9
2,303,549	+		DZA65_RS10880	0.38	-1.1
2,303,549	+		DZA65_RS10880	0.38	-0.3
2,303,549	+		DZA65_RS10880	0.38	-1.1
2,303,550	-		DZA65_RS10880	0.38	-1.9
2,303,550	-		DZA65_RS10880	0.38	+0.1
2,303,550	-		DZA65_RS10880	0.38	-1.7
2,303,553	+		DZA65_RS10880	0.39	+0.2
2,303,553	+		DZA65_RS10880	0.39	+0.3
2,303,553	+		DZA65_RS10880	0.39	+1.1
2,303,553	+		DZA65_RS10880	0.39	-0.3
2,303,554	-		DZA65_RS10880	0.39	-0.8
2,303,554	-		DZA65_RS10880	0.39	+0.3
2,303,554	-		DZA65_RS10880	0.39	+0.3
2,303,554	-		DZA65_RS10880	0.39	-0.4
2,303,554	-		DZA65_RS10880	0.39	+1.2
2,303,554	-		DZA65_RS10880	0.39	+0.3
2,303,595	-		DZA65_RS10880	0.43	+0.3
2,303,877	+		DZA65_RS10880	0.71	-0.8
2,303,877	+		DZA65_RS10880	0.71	-1.2
2,303,877	+		DZA65_RS10880	0.71	-0.5
2,303,877	+		DZA65_RS10880	0.71	+1.5
2,303,877	+		DZA65_RS10880	0.71	-0.9
2,303,877	+		DZA65_RS10880	0.71	-1.0
2,303,877	+		DZA65_RS10880	0.71	+0.2
2,303,878	-		DZA65_RS10880	0.71	-0.2
2,303,878	-		DZA65_RS10880	0.71	-0.5
2,303,878	-		DZA65_RS10880	0.71	-1.7
2,303,878	-		DZA65_RS10880	0.71	+2.1
2,303,907	+		DZA65_RS10880	0.74	-0.7
2,303,908	-		DZA65_RS10880	0.74	+0.0
2,303,908	-				+0.3
2,303,908	-		DZA65_RS10880	0.74	-0.4
2,303,940	+		DZA65_RS10880	0.77	+0.0
2,303,941	-		DZA65_RS10880	0.77	-3.1
2,303,941	-		DZA65_RS10880	0.77	+2.1
2,303,941	-		DZA65_RS10880	0.77	-0.5
2,304,058	+		DZA65_RS10880	0.89	+0.3
2,304,058	+		DZA65_RS10880	0.89	+0.1
2,304,058	+		DZA65_RS10880	0.89	+0.3
2,304,059	-		DZA65_RS10880	0.89	-1.0
2,304,140	-				+1.1