Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09995

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS09990 and DZA65_RS09995 are separated by 113 nucleotidesDZA65_RS09995 and DZA65_RS10000 are separated by 214 nucleotides DZA65_RS09990: DZA65_RS09990 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 2,114,395 to 2,115,480 _RS09990 DZA65_RS09995: DZA65_RS09995 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,115,594 to 2,116,883 _RS09995 DZA65_RS10000: DZA65_RS10000 - (d)CMP kinase, at 2,117,098 to 2,117,784 _RS10000 Position (kb) 2115 2116 2117Strain fitness (log2 ratio) -2 -1 0 1 2at 2114.682 kb on + strand, within DZA65_RS09990at 2114.827 kb on + strand, within DZA65_RS09990at 2114.968 kb on + strand, within DZA65_RS09990at 2115.073 kb on + strand, within DZA65_RS09990at 2115.220 kb on + strand, within DZA65_RS09990at 2115.220 kb on + strand, within DZA65_RS09990at 2115.406 kb on + strandat 2115.481 kb on + strandat 2115.485 kb on + strandat 2115.503 kb on + strandat 2115.503 kb on + strandat 2115.503 kb on + strandat 2115.507 kb on + strandat 2115.507 kb on + strandat 2115.507 kb on + strandat 2115.507 kb on + strandat 2115.507 kb on + strandat 2115.507 kb on + strandat 2115.508 kb on - strandat 2115.509 kb on + strandat 2115.509 kb on + strandat 2116.907 kb on + strandat 2116.907 kb on + strandat 2116.908 kb on - strandat 2116.908 kb on - strandat 2116.921 kb on - strandat 2116.950 kb on + strandat 2116.950 kb on + strandat 2116.950 kb on + strandat 2116.951 kb on - strandat 2116.957 kb on - strandat 2116.958 kb on + strandat 2116.958 kb on + strandat 2116.959 kb on - strandat 2116.959 kb on - strandat 2116.975 kb on + strandat 2116.975 kb on + strandat 2116.976 kb on - strandat 2116.999 kb on + strandat 2116.999 kb on + strandat 2116.999 kb on + strandat 2117.000 kb on - strandat 2117.000 kb on - strandat 2117.000 kb on - strandat 2117.035 kb on + strandat 2117.035 kb on + strandat 2117.035 kb on + strandat 2117.036 kb on - strandat 2117.045 kb on + strandat 2117.046 kb on - strandat 2117.046 kb on - strandat 2117.050 kb on + strandat 2117.050 kb on + strandat 2117.050 kb on + strandat 2117.050 kb on + strandat 2117.051 kb on - strandat 2117.051 kb on - strandat 2117.057 kb on + strandat 2117.057 kb on + strandat 2117.057 kb on + strandat 2117.085 kb on + strandat 2117.085 kb on + strandat 2117.795 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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2,114,682 + DZA65_RS09990 0.26 -0.4
2,114,827 + DZA65_RS09990 0.40 -1.4
2,114,968 + DZA65_RS09990 0.53 -2.2
2,115,073 + DZA65_RS09990 0.62 -1.5
2,115,220 + DZA65_RS09990 0.76 -0.6
2,115,220 + DZA65_RS09990 0.76 -1.8
2,115,406 + -1.3
2,115,481 + +1.5
2,115,485 + +0.9
2,115,503 + -0.6
2,115,503 + +1.4
2,115,503 + +0.1
2,115,507 + -0.4
2,115,507 + +0.6
2,115,507 + -0.7
2,115,507 + +0.4
2,115,507 + -0.6
2,115,507 + +1.0
2,115,508 - -0.6
2,115,509 + -0.0
2,115,509 + -0.9
2,116,907 + -0.8
2,116,907 + +0.9
2,116,908 - -0.1
2,116,908 - -1.4
2,116,921 - +0.5
2,116,950 + +0.4
2,116,950 + -1.6
2,116,950 + +2.4
2,116,951 - -0.4
2,116,957 - -2.4
2,116,958 + -0.3
2,116,958 + -0.1
2,116,959 - +0.6
2,116,959 - -1.6
2,116,975 + -0.2
2,116,975 + -1.4
2,116,976 - -1.6
2,116,999 + +0.7
2,116,999 + +0.0
2,116,999 + +0.5
2,117,000 - +0.6
2,117,000 - -1.1
2,117,000 - +0.5
2,117,035 + +0.1
2,117,035 + +0.1
2,117,035 + +0.2
2,117,036 - -0.5
2,117,045 + +1.7
2,117,046 - -1.2
2,117,046 - +0.1
2,117,050 + +1.0
2,117,050 + +1.4
2,117,050 + -0.8
2,117,050 + +0.4
2,117,051 - -0.4
2,117,051 - -1.4
2,117,057 + +0.2
2,117,057 + +0.4
2,117,057 + +0.1
2,117,085 + +1.4
2,117,085 + -0.2
2,117,795 + -1.4

Or see this region's nucleotide sequence