Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05950

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,225,842	+				+0.4
1,225,842	+				+0.6
1,225,843	-				-0.4
1,225,843	-				-0.7
1,225,910	-				+0.1
1,225,943	-				-0.9
1,225,993	+		DZA65_RS05945	0.20	+1.0
1,225,994	-		DZA65_RS05945	0.20	+0.0
1,226,035	+		DZA65_RS05945	0.28	+0.2
1,226,036	-		DZA65_RS05945	0.29	-1.8
1,226,036	-		DZA65_RS05945	0.29	-0.3
1,226,168	+		DZA65_RS05945	0.55	-1.1
1,226,169	-		DZA65_RS05945	0.56	-1.0
1,226,322	+		DZA65_RS05945	0.87	-0.6
1,226,322	+		DZA65_RS05945	0.87	-0.0
1,226,323	-		DZA65_RS05945	0.87	-2.5
1,226,371	+				+0.7
1,226,394	+				-0.2
1,226,394	+				-0.6
1,226,436	+				-1.4
1,226,466	+				-0.7
1,226,467	-				-0.1
1,226,467	-				+0.1
1,226,539	-				-0.9
1,226,620	+				-1.6
1,226,620	+				+1.7
1,226,620	+				+0.0
1,226,621	-				+1.1
1,226,621	-				-0.6
1,226,621	-				-0.2
1,226,621	-				-0.0
1,226,626	-				+0.0
1,226,629	+				+0.3
1,226,629	+				-1.1
1,226,629	+				-0.2
1,226,629	+				-0.4
1,226,629	+				+0.1
1,226,629	+				-0.3
1,226,630	-				-0.3
1,226,630	-				+0.1
1,226,630	-				-1.3
1,226,630	-				-0.9
1,226,630	-				-0.6
1,226,630	-				+0.6
1,226,630	-				+1.2
1,226,640	-				-2.1
1,226,640	-				-0.0
1,226,640	-				-0.7
1,226,643	+				-0.5
1,226,643	+				+1.0
1,226,643	+				+0.2
1,226,643	+				-1.6
1,226,643	+				+0.7
1,226,644	-				-0.2
1,226,687	+				-0.9
1,226,687	+				+0.2
1,226,687	+				-1.5
1,226,688	-				-0.5
1,226,688	-				+1.4
1,226,706	+				-0.9
1,226,706	+				-0.7
1,226,706	+				+0.7
1,226,706	+				-0.7
1,226,706	+				-0.3
1,226,707	-				-0.4
1,226,707	-				-1.0
1,226,759	+				+0.4
1,226,775	+				+0.9
1,226,776	-				-0.1
1,226,776	-				-0.5
1,226,776	-				-0.4
1,226,778	-				+0.3
1,226,778	-				+0.2
1,226,834	+				+0.9
1,226,835	-				-0.2
1,226,849	+				+1.8
1,226,876	+				-0.0
1,226,876	+				+0.3
1,226,877	-				+0.7
1,226,877	-				-0.3
1,226,882	+				-1.1
1,226,882	+				-0.1
1,226,882	+				+0.4
1,226,882	+				-1.1
1,226,882	+				+0.4
1,226,882	+				+0.3
1,226,882	+				-0.3
1,226,882	+				+0.3
1,226,882	+				+2.1
1,226,882	+				+0.7
1,226,882	+				+0.1
1,226,882	+				+0.2
1,226,882	+				-0.3
1,226,882	+				-1.6
1,226,882	+				+0.2
1,226,882	+				+1.3
1,226,882	+				+1.1
1,226,883	-				-2.1
1,226,883	-				+0.3
1,226,883	-				+0.7
1,226,883	-				+0.6
1,226,883	-				-3.4
1,226,883	-				+0.0
1,226,883	-				-0.1
1,226,883	-				+0.8
1,226,883	-				-1.0
1,226,883	-				+1.6
1,226,883	-				+0.2
1,226,924	+		DZA65_RS05950	0.11	+0.1
1,226,924	+		DZA65_RS05950	0.11	+0.7
1,226,924	+		DZA65_RS05950	0.11	+0.1
1,226,924	+		DZA65_RS05950	0.11	+0.7
1,226,954	+		DZA65_RS05950	0.14	+0.2
1,226,955	-		DZA65_RS05950	0.14	-0.3
1,226,955	-		DZA65_RS05950	0.14	-0.7
1,227,041	+		DZA65_RS05950	0.21	-0.7
1,227,074	+		DZA65_RS05950	0.24	+0.1
1,227,074	+		DZA65_RS05950	0.24	-1.3
1,227,111	+		DZA65_RS05950	0.27	+0.5
1,227,112	-		DZA65_RS05950	0.27	+0.4
1,227,132	+		DZA65_RS05950	0.29	+0.2
1,227,132	+		DZA65_RS05950	0.29	+1.5
1,227,132	+		DZA65_RS05950	0.29	+1.7
1,227,133	-		DZA65_RS05950	0.29	-0.5
1,227,139	-		DZA65_RS05950	0.29	-0.3
1,227,145	+		DZA65_RS05950	0.30	-0.6
1,227,146	-		DZA65_RS05950	0.30	-2.3
1,227,146	-		DZA65_RS05950	0.30	+0.2
1,227,176	+		DZA65_RS05950	0.32	+1.7
1,227,176	+		DZA65_RS05950	0.32	-1.4
1,227,176	+		DZA65_RS05950	0.32	+0.0
1,227,177	-		DZA65_RS05950	0.32	+0.2
1,227,179	+		DZA65_RS05950	0.33	+1.1
1,227,179	+				+0.7
1,227,180	-		DZA65_RS05950	0.33	+1.7
1,227,195	+		DZA65_RS05950	0.34	+0.5
1,227,195	+				+0.7
1,227,195	+		DZA65_RS05950	0.34	-1.6
1,227,195	+		DZA65_RS05950	0.34	-0.0
1,227,195	+		DZA65_RS05950	0.34	+0.1
1,227,195	+		DZA65_RS05950	0.34	-0.6
1,227,195	+		DZA65_RS05950	0.34	-0.6
1,227,195	+		DZA65_RS05950	0.34	-0.3
1,227,196	-		DZA65_RS05950	0.34	+0.2
1,227,196	-		DZA65_RS05950	0.34	-0.3
1,227,196	-		DZA65_RS05950	0.34	+1.0
1,227,196	-		DZA65_RS05950	0.34	+0.4
1,227,196	-		DZA65_RS05950	0.34	+0.7
1,227,196	-		DZA65_RS05950	0.34	+0.1
1,227,196	-		DZA65_RS05950	0.34	-0.3
1,227,196	-		DZA65_RS05950	0.34	-0.8
1,227,196	-		DZA65_RS05950	0.34	+0.9
1,227,196	-		DZA65_RS05950	0.34	+0.9
1,227,197	+		DZA65_RS05950	0.34	-1.0
1,227,197	+		DZA65_RS05950	0.34	+0.8
1,227,198	-				-0.3
1,227,198	-		DZA65_RS05950	0.34	-1.0
1,227,200	+		DZA65_RS05950	0.34	+3.9
1,227,201	-		DZA65_RS05950	0.35	+0.2
1,227,288	+		DZA65_RS05950	0.42	-0.3
1,227,288	+		DZA65_RS05950	0.42	+0.0
1,227,288	+		DZA65_RS05950	0.42	+1.1
1,227,288	+		DZA65_RS05950	0.42	+0.5
1,227,289	-		DZA65_RS05950	0.42	-0.3
1,227,289	-		DZA65_RS05950	0.42	+1.7
1,227,294	+		DZA65_RS05950	0.42	-0.0
1,227,294	+		DZA65_RS05950	0.42	+1.0
1,227,294	+		DZA65_RS05950	0.42	-0.3
1,227,294	+				+2.3
1,227,294	+		DZA65_RS05950	0.42	+1.1
1,227,295	-		DZA65_RS05950	0.42	+0.5
1,227,336	-		DZA65_RS05950	0.46	+0.7
1,227,375	+		DZA65_RS05950	0.49	-0.5
1,227,569	+		DZA65_RS05950	0.65	-2.1
1,227,711	+		DZA65_RS05950	0.77	+0.2
1,227,800	+		DZA65_RS05950	0.85	+0.1
1,227,811	+		DZA65_RS05950	0.86	-0.9
1,227,812	-		DZA65_RS05950	0.86	+0.7
1,227,812	-		DZA65_RS05950	0.86	+2.3
1,227,812	-		DZA65_RS05950	0.86	+0.4
1,227,838	+		DZA65_RS05950	0.88	+0.9
1,227,839	-		DZA65_RS05950	0.88	+0.1
1,227,877	+				+0.7
1,227,877	+				+1.4
1,227,877	+				-0.4
1,227,877	+				-0.3
1,227,877	+				-1.0
1,227,877	+				+0.2
1,227,878	-				-0.8
1,227,878	-				+2.4
1,227,878	-				-1.6
1,227,978	+				+0.7
1,227,978	+				-0.3
1,227,979	-				+1.4
1,228,009	+				-0.9
1,228,009	+				-1.6
1,228,009	+				+0.8
1,228,009	+				-0.2
1,228,009	+				+0.1
1,228,010	-				-0.3
1,228,010	-				-0.1
1,228,010	-				+0.1
1,228,014	+				-0.3
1,228,056	+				-0.6
1,228,056	+				-0.9
1,228,079	+				-0.3
1,228,079	+				+0.1
1,228,079	+				+0.1
1,228,080	-				-0.3
1,228,080	-				+0.3
1,228,097	+				-0.2
1,228,097	+				-2.5
1,228,232	-		DZA65_RS05955	0.32	+1.7
1,228,233	+		DZA65_RS05955	0.32	-0.9
1,228,233	+		DZA65_RS05955	0.32	-1.1
1,228,234	-		DZA65_RS05955	0.33	+0.6
1,228,244	+		DZA65_RS05955	0.35	+0.1
1,228,245	-		DZA65_RS05955	0.35	-0.3
1,228,245	-		DZA65_RS05955	0.35	+1.1
1,228,245	-		DZA65_RS05955	0.35	+1.1
1,228,276	+		DZA65_RS05955	0.41	+1.0
1,228,276	+		DZA65_RS05955	0.41	-0.2
1,228,276	+		DZA65_RS05955	0.41	+1.0
1,228,276	+		DZA65_RS05955	0.41	-0.9
1,228,276	+		DZA65_RS05955	0.41	+0.2
1,228,276	+		DZA65_RS05955	0.41	-0.2
1,228,277	-		DZA65_RS05955	0.41	+0.9
1,228,302	+				+0.3
1,228,302	+		DZA65_RS05955	0.46	-0.3
1,228,302	+		DZA65_RS05955	0.46	-0.5
1,228,302	+		DZA65_RS05955	0.46	+1.4
1,228,302	+		DZA65_RS05955	0.46	+0.9
1,228,303	-		DZA65_RS05955	0.46	+0.1
1,228,303	-		DZA65_RS05955	0.46	-1.5
1,228,355	+				-0.3
1,228,355	+		DZA65_RS05955	0.57	-0.3
1,228,355	+		DZA65_RS05955	0.57	-0.9
1,228,355	+		DZA65_RS05955	0.57	+0.1
1,228,355	+		DZA65_RS05955	0.57	+0.1
1,228,355	+		DZA65_RS05955	0.57	+0.0
1,228,355	+		DZA65_RS05955	0.57	-0.0
1,228,355	+		DZA65_RS05955	0.57	+0.7
1,228,355	+		DZA65_RS05955	0.57	+0.5
1,228,356	-		DZA65_RS05955	0.57	-0.9
1,228,356	-		DZA65_RS05955	0.57	-2.1
1,228,356	-		DZA65_RS05955	0.57	-1.1
1,228,386	+		DZA65_RS05955	0.63	+0.0
1,228,386	+		DZA65_RS05955	0.63	+0.3
1,228,386	+		DZA65_RS05955	0.63	+0.2
1,228,386	+		DZA65_RS05955	0.63	-0.7
1,228,386	+		DZA65_RS05955	0.63	-0.3
1,228,386	+		DZA65_RS05955	0.63	-1.0
1,228,386	+		DZA65_RS05955	0.63	+0.9
1,228,386	+		DZA65_RS05955	0.63	+0.3
1,228,387	-		DZA65_RS05955	0.63	+0.7
1,228,387	-		DZA65_RS05955	0.63	-1.3
1,228,387	-		DZA65_RS05955	0.63	-2.5
1,228,387	-		DZA65_RS05955	0.63	-0.3
1,228,387	-		DZA65_RS05955	0.63	-1.6
1,228,387	-		DZA65_RS05955	0.63	-0.6
1,228,420	+		DZA65_RS05955	0.70	-1.6
1,228,421	-		DZA65_RS05955	0.70	-0.6
1,228,497	+		DZA65_RS05955	0.85	+0.1
1,228,497	+		DZA65_RS05955	0.85	-0.7
1,228,502	+		DZA65_RS05955	0.86	-1.2
1,228,502	+		DZA65_RS05955	0.86	-0.5
1,228,502	+		DZA65_RS05955	0.86	+4.3
1,228,503	-		DZA65_RS05955	0.87	+0.5
1,228,503	-		DZA65_RS05955	0.87	+1.2
1,228,503	-		DZA65_RS05955	0.87	+0.4
1,228,503	-		DZA65_RS05955	0.87	-1.0
1,228,532	+				-0.5
1,228,552	-				+0.0
1,228,552	-				-0.3
1,228,742	+		DZA65_RS05960	0.10	+0.1
1,228,770	-		DZA65_RS05960	0.12	-0.4
1,228,939	+		DZA65_RS05960	0.24	+0.7
1,228,940	-		DZA65_RS05960	0.25	+1.3
1,228,940	-		DZA65_RS05960	0.25	+0.7
1,228,963	+		DZA65_RS05960	0.26	-0.3
1,228,964	-		DZA65_RS05960	0.26	+1.7