Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05895

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05890 and DZA65_RS05895 are separated by 120 nucleotidesDZA65_RS05895 and DZA65_RS05900 are separated by 22 nucleotidesDZA65_RS05900 and DZA65_RS05905 are separated by 60 nucleotides DZA65_RS05890: DZA65_RS05890 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,215,676 to 1,216,788 _RS05890 DZA65_RS05895: DZA65_RS05895 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,216,909 to 1,217,382 _RS05895 DZA65_RS05900: DZA65_RS05900 - transcription antitermination factor NusB, at 1,217,405 to 1,217,824 _RS05900 DZA65_RS05905: DZA65_RS05905 - thiamine-phosphate kinase, at 1,217,885 to 1,218,859 _RS05905 Position (kb) 1216 1217 1218Strain fitness (log2 ratio) -3 -2 -1 0 1at 1216.776 kb on - strandat 1216.786 kb on + strandat 1216.787 kb on - strandat 1216.787 kb on - strandat 1216.858 kb on + strandat 1216.858 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.863 kb on + strandat 1216.888 kb on + strandat 1216.888 kb on + strandat 1217.543 kb on + strand, within DZA65_RS05900at 1217.801 kb on + strandat 1217.822 kb on + strandat 1217.865 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,216,776 - -1.3
1,216,786 + -1.9
1,216,787 - -0.9
1,216,787 - -2.8
1,216,858 + -1.5
1,216,858 + -0.3
1,216,863 + +0.9
1,216,863 + -0.3
1,216,863 + -2.3
1,216,863 + -1.0
1,216,863 + +0.2
1,216,863 + -0.1
1,216,863 + +1.1
1,216,863 + -0.1
1,216,863 + -0.1
1,216,863 + +0.5
1,216,863 + +0.2
1,216,863 + +0.2
1,216,888 + +0.7
1,216,888 + +0.7
1,217,543 + DZA65_RS05900 0.33 -0.6
1,217,801 + -0.1
1,217,822 + +0.2
1,217,865 + -1.3

Or see this region's nucleotide sequence