Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS05870 and DZA65_RS05875 are separated by 91 nucleotides DZA65_RS05875 and DZA65_RS05880 are separated by 165 nucleotides DZA65_RS05880 and DZA65_RS05885 are separated by 470 nucleotides DZA65_RS05885 and DZA65_RS05890 are separated by 62 nucleotides
DZA65_RS05870: DZA65_RS05870 - protein translocase subunit SecF, at 1,210,193 to 1,211,164
_RS05870
DZA65_RS05875: DZA65_RS05875 - DUF3251 domain-containing protein, at 1,211,256 to 1,211,816
_RS05875
DZA65_RS05880: DZA65_RS05880 - magnesium-translocating P-type ATPase, at 1,211,982 to 1,214,693
_RS05880
DZA65_RS05885: DZA65_RS05885 - transcriptional regulator NrdR, at 1,215,164 to 1,215,613
_RS05885
DZA65_RS05890: DZA65_RS05890 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,215,676 to 1,216,788
_RS05890
Position (kb) 1211
1212
1213
1214
1215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1211.092 kb on + strand at 1211.195 kb on + strand at 1211.195 kb on + strand at 1211.196 kb on - strand at 1211.225 kb on - strand at 1211.285 kb on + strand at 1211.285 kb on + strand at 1211.286 kb on - strand at 1211.299 kb on - strand at 1211.299 kb on - strand at 1211.299 kb on - strand at 1211.299 kb on - strand at 1211.309 kb on + strand at 1211.309 kb on + strand at 1211.310 kb on - strand at 1211.353 kb on - strand, within DZA65_RS05875 at 1211.359 kb on - strand, within DZA65_RS05875 at 1211.364 kb on - strand, within DZA65_RS05875 at 1211.403 kb on + strand, within DZA65_RS05875 at 1211.404 kb on - strand, within DZA65_RS05875 at 1211.404 kb on - strand, within DZA65_RS05875 at 1211.558 kb on + strand, within DZA65_RS05875 at 1211.558 kb on + strand, within DZA65_RS05875 at 1211.559 kb on - strand, within DZA65_RS05875 at 1211.559 kb on - strand, within DZA65_RS05875 at 1211.559 kb on - strand, within DZA65_RS05875 at 1211.559 kb on - strand, within DZA65_RS05875 at 1211.571 kb on + strand, within DZA65_RS05875 at 1211.572 kb on - strand, within DZA65_RS05875 at 1211.572 kb on - strand, within DZA65_RS05875 at 1211.572 kb on - strand, within DZA65_RS05875 at 1211.596 kb on - strand, within DZA65_RS05875 at 1211.596 kb on - strand, within DZA65_RS05875 at 1211.626 kb on + strand, within DZA65_RS05875 at 1211.626 kb on + strand, within DZA65_RS05875 at 1211.627 kb on - strand, within DZA65_RS05875 at 1211.627 kb on - strand, within DZA65_RS05875 at 1211.652 kb on + strand, within DZA65_RS05875 at 1211.652 kb on + strand, within DZA65_RS05875 at 1211.657 kb on + strand, within DZA65_RS05875 at 1211.657 kb on + strand, within DZA65_RS05875 at 1211.657 kb on + strand, within DZA65_RS05875 at 1211.657 kb on + strand, within DZA65_RS05875 at 1211.658 kb on - strand, within DZA65_RS05875 at 1211.658 kb on - strand, within DZA65_RS05875 at 1211.658 kb on - strand, within DZA65_RS05875 at 1211.658 kb on - strand, within DZA65_RS05875 at 1211.658 kb on - strand, within DZA65_RS05875 at 1211.796 kb on - strand at 1211.817 kb on - strand at 1211.831 kb on + strand at 1211.850 kb on - strand at 1211.850 kb on - strand at 1211.864 kb on + strand at 1211.864 kb on + strand at 1211.864 kb on + strand at 1211.864 kb on + strand at 1211.865 kb on - strand at 1211.875 kb on + strand at 1211.875 kb on + strand at 1211.875 kb on + strand at 1211.875 kb on + strand at 1211.875 kb on + strand at 1211.875 kb on + strand at 1211.875 kb on + strand at 1211.875 kb on + strand at 1211.875 kb on + strand at 1211.876 kb on - strand at 1211.876 kb on - strand at 1211.876 kb on - strand at 1211.876 kb on - strand at 1211.876 kb on - strand at 1211.876 kb on - strand at 1211.876 kb on - strand at 1211.876 kb on - strand at 1211.876 kb on - strand at 1211.876 kb on - strand at 1211.877 kb on + strand at 1211.877 kb on + strand at 1211.877 kb on + strand at 1211.878 kb on - strand at 1211.878 kb on - strand at 1211.882 kb on + strand at 1211.883 kb on - strand at 1211.887 kb on + strand at 1211.888 kb on - strand at 1212.040 kb on + strand at 1212.041 kb on - strand at 1212.073 kb on + strand at 1212.073 kb on + strand at 1212.073 kb on + strand at 1212.073 kb on + strand at 1212.073 kb on + strand at 1212.074 kb on - strand at 1212.074 kb on - strand at 1212.151 kb on - strand at 1212.151 kb on - strand at 1212.195 kb on - strand at 1212.204 kb on - strand at 1212.221 kb on + strand at 1212.221 kb on + strand at 1212.221 kb on + strand at 1212.221 kb on + strand at 1212.222 kb on - strand at 1212.222 kb on - strand at 1212.257 kb on + strand, within DZA65_RS05880 at 1212.258 kb on - strand, within DZA65_RS05880 at 1212.277 kb on - strand, within DZA65_RS05880 at 1212.347 kb on + strand, within DZA65_RS05880 at 1212.347 kb on + strand, within DZA65_RS05880 at 1212.375 kb on - strand, within DZA65_RS05880 at 1212.453 kb on + strand, within DZA65_RS05880 at 1212.453 kb on + strand, within DZA65_RS05880 at 1212.453 kb on + strand, within DZA65_RS05880 at 1212.464 kb on + strand, within DZA65_RS05880 at 1212.464 kb on + strand, within DZA65_RS05880 at 1212.464 kb on + strand, within DZA65_RS05880 at 1212.464 kb on + strand, within DZA65_RS05880 at 1212.469 kb on + strand, within DZA65_RS05880 at 1212.469 kb on + strand, within DZA65_RS05880 at 1212.469 kb on + strand, within DZA65_RS05880 at 1212.469 kb on + strand, within DZA65_RS05880 at 1212.469 kb on + strand, within DZA65_RS05880 at 1212.469 kb on + strand, within DZA65_RS05880 at 1212.470 kb on - strand, within DZA65_RS05880 at 1212.470 kb on - strand, within DZA65_RS05880 at 1212.470 kb on - strand, within DZA65_RS05880 at 1212.470 kb on - strand, within DZA65_RS05880 at 1212.668 kb on + strand, within DZA65_RS05880 at 1212.669 kb on - strand, within DZA65_RS05880 at 1212.714 kb on - strand, within DZA65_RS05880 at 1213.060 kb on + strand, within DZA65_RS05880 at 1213.060 kb on + strand, within DZA65_RS05880 at 1213.060 kb on + strand, within DZA65_RS05880 at 1213.060 kb on + strand, within DZA65_RS05880 at 1213.060 kb on + strand, within DZA65_RS05880 at 1213.061 kb on - strand, within DZA65_RS05880 at 1213.061 kb on - strand, within DZA65_RS05880 at 1213.061 kb on - strand, within DZA65_RS05880 at 1213.283 kb on + strand, within DZA65_RS05880 at 1213.283 kb on + strand, within DZA65_RS05880 at 1213.283 kb on + strand, within DZA65_RS05880 at 1213.284 kb on - strand, within DZA65_RS05880 at 1213.284 kb on - strand, within DZA65_RS05880 at 1213.284 kb on - strand, within DZA65_RS05880 at 1213.431 kb on + strand, within DZA65_RS05880 at 1213.432 kb on - strand, within DZA65_RS05880 at 1213.535 kb on + strand, within DZA65_RS05880 at 1213.535 kb on + strand, within DZA65_RS05880 at 1213.536 kb on - strand, within DZA65_RS05880 at 1213.754 kb on - strand, within DZA65_RS05880 at 1213.754 kb on - strand, within DZA65_RS05880 at 1213.763 kb on + strand, within DZA65_RS05880 at 1213.763 kb on + strand, within DZA65_RS05880 at 1213.764 kb on - strand, within DZA65_RS05880 at 1213.895 kb on + strand at 1213.896 kb on - strand, within DZA65_RS05880 at 1213.955 kb on + strand, within DZA65_RS05880 at 1214.006 kb on + strand, within DZA65_RS05880 at 1214.085 kb on - strand, within DZA65_RS05880 at 1214.277 kb on - strand, within DZA65_RS05880 at 1214.341 kb on + strand, within DZA65_RS05880 at 1214.341 kb on + strand, within DZA65_RS05880 at 1214.400 kb on + strand, within DZA65_RS05880 at 1214.400 kb on + strand, within DZA65_RS05880 at 1214.400 kb on + strand, within DZA65_RS05880 at 1214.401 kb on - strand, within DZA65_RS05880 at 1214.518 kb on + strand at 1214.518 kb on + strand at 1214.519 kb on - strand at 1214.519 kb on - strand at 1214.519 kb on - strand at 1214.684 kb on + strand at 1214.737 kb on + strand at 1214.738 kb on - strand at 1214.772 kb on + strand at 1214.772 kb on + strand at 1214.773 kb on - strand at 1214.773 kb on - strand at 1214.837 kb on - strand at 1214.881 kb on + strand at 1214.965 kb on - strand at 1215.023 kb on - strand at 1215.023 kb on - strand at 1215.027 kb on + strand at 1215.027 kb on + strand at 1215.032 kb on + strand at 1215.032 kb on + strand at 1215.032 kb on + strand at 1215.033 kb on - strand at 1215.033 kb on - strand at 1215.033 kb on - strand at 1215.033 kb on - strand at 1215.033 kb on - strand at 1215.033 kb on - strand at 1215.033 kb on - strand at 1215.033 kb on - strand at 1215.107 kb on + strand at 1215.107 kb on + strand at 1215.108 kb on - strand at 1215.108 kb on - strand at 1215.108 kb on - strand at 1215.108 kb on - strand at 1215.128 kb on + strand at 1215.128 kb on + strand at 1215.128 kb on + strand at 1215.141 kb on + strand at 1215.141 kb on + strand at 1215.141 kb on + strand at 1215.141 kb on + strand at 1215.141 kb on + strand at 1215.141 kb on + strand at 1215.141 kb on + strand at 1215.141 kb on + strand at 1215.141 kb on + strand at 1215.147 kb on + strand at 1215.163 kb on + strand at 1215.277 kb on + strand, within DZA65_RS05885 at 1215.278 kb on - strand, within DZA65_RS05885 at 1215.325 kb on + strand at 1215.325 kb on + strand, within DZA65_RS05885 at 1215.325 kb on + strand, within DZA65_RS05885 at 1215.325 kb on + strand, within DZA65_RS05885 at 1215.427 kb on + strand, within DZA65_RS05885 at 1215.427 kb on + strand, within DZA65_RS05885 at 1215.533 kb on + strand, within DZA65_RS05885 at 1215.533 kb on + strand, within DZA65_RS05885 at 1215.533 kb on + strand, within DZA65_RS05885 at 1215.553 kb on - strand, within DZA65_RS05885 at 1215.553 kb on - strand, within DZA65_RS05885 at 1215.553 kb on - strand, within DZA65_RS05885 at 1215.553 kb on - strand, within DZA65_RS05885 at 1215.553 kb on - strand, within DZA65_RS05885 at 1215.553 kb on - strand, within DZA65_RS05885 at 1215.554 kb on + strand, within DZA65_RS05885 at 1215.555 kb on - strand, within DZA65_RS05885 at 1215.666 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 1,211,092 + +1.2 1,211,195 + -0.8 1,211,195 + -0.6 1,211,196 - +0.6 1,211,225 - +0.1 1,211,285 + +0.3 1,211,285 + +2.5 1,211,286 - -1.9 1,211,299 - -0.6 1,211,299 - -0.4 1,211,299 - -3.0 1,211,299 - -0.3 1,211,309 + +0.3 1,211,309 + -0.6 1,211,310 - +0.1 1,211,353 - DZA65_RS05875 0.17 +1.4 1,211,359 - DZA65_RS05875 0.18 -0.5 1,211,364 - DZA65_RS05875 0.19 +0.0 1,211,403 + DZA65_RS05875 0.26 +0.3 1,211,404 - DZA65_RS05875 0.26 -0.6 1,211,404 - DZA65_RS05875 0.26 +1.3 1,211,558 + DZA65_RS05875 0.54 -1.3 1,211,558 + DZA65_RS05875 0.54 -0.5 1,211,559 - DZA65_RS05875 0.54 -1.2 1,211,559 - DZA65_RS05875 0.54 -0.0 1,211,559 - DZA65_RS05875 0.54 +0.3 1,211,559 - DZA65_RS05875 0.54 -1.3 1,211,571 + DZA65_RS05875 0.56 -0.2 1,211,572 - DZA65_RS05875 0.56 -0.6 1,211,572 - DZA65_RS05875 0.56 -1.6 1,211,572 - DZA65_RS05875 0.56 +0.8 1,211,596 - DZA65_RS05875 0.61 +1.1 1,211,596 - DZA65_RS05875 0.61 -0.2 1,211,626 + DZA65_RS05875 0.66 -0.5 1,211,626 + DZA65_RS05875 0.66 -0.6 1,211,627 - DZA65_RS05875 0.66 -1.1 1,211,627 - DZA65_RS05875 0.66 +1.7 1,211,652 + DZA65_RS05875 0.71 -0.2 1,211,652 + DZA65_RS05875 0.71 -0.5 1,211,657 + DZA65_RS05875 0.71 -1.1 1,211,657 + DZA65_RS05875 0.71 +0.1 1,211,657 + DZA65_RS05875 0.71 -1.3 1,211,657 + DZA65_RS05875 0.71 +0.9 1,211,658 - DZA65_RS05875 0.72 -2.8 1,211,658 - DZA65_RS05875 0.72 +0.1 1,211,658 - DZA65_RS05875 0.72 +3.1 1,211,658 - DZA65_RS05875 0.72 +1.9 1,211,658 - DZA65_RS05875 0.72 -0.0 1,211,796 - -1.9 1,211,817 - +0.3 1,211,831 + -0.6 1,211,850 - -1.6 1,211,850 - +0.1 1,211,864 + +1.4 1,211,864 + +0.5 1,211,864 + +0.4 1,211,864 + -1.6 1,211,865 - +2.4 1,211,875 + -0.4 1,211,875 + +1.1 1,211,875 + -0.3 1,211,875 + +0.4 1,211,875 + -0.5 1,211,875 + -0.3 1,211,875 + -0.3 1,211,875 + -0.4 1,211,875 + -0.6 1,211,876 - +0.7 1,211,876 - -0.2 1,211,876 - -2.6 1,211,876 - +0.8 1,211,876 - -3.0 1,211,876 - -0.6 1,211,876 - +0.2 1,211,876 - +2.5 1,211,876 - -0.2 1,211,876 - -1.5 1,211,877 + +0.4 1,211,877 + -0.1 1,211,877 + +0.2 1,211,878 - +0.1 1,211,878 - +0.4 1,211,882 + -0.7 1,211,883 - -1.4 1,211,887 + +0.6 1,211,888 - -1.5 1,212,040 + +0.3 1,212,041 - -0.0 1,212,073 + -0.9 1,212,073 + -0.5 1,212,073 + +0.4 1,212,073 + -0.3 1,212,073 + -0.9 1,212,074 - +0.1 1,212,074 - -1.3 1,212,151 - +0.6 1,212,151 - -1.9 1,212,195 - -0.3 1,212,204 - +1.3 1,212,221 + -0.0 1,212,221 + -1.9 1,212,221 + +0.6 1,212,221 + -0.1 1,212,222 - +0.1 1,212,222 - +2.4 1,212,257 + DZA65_RS05880 0.10 +0.0 1,212,258 - DZA65_RS05880 0.10 +0.0 1,212,277 - DZA65_RS05880 0.11 +0.5 1,212,347 + DZA65_RS05880 0.13 -1.6 1,212,347 + DZA65_RS05880 0.13 -0.3 1,212,375 - DZA65_RS05880 0.14 +1.1 1,212,453 + DZA65_RS05880 0.17 +0.4 1,212,453 + DZA65_RS05880 0.17 +0.2 1,212,453 + DZA65_RS05880 0.17 -0.3 1,212,464 + DZA65_RS05880 0.18 +0.8 1,212,464 + DZA65_RS05880 0.18 +0.9 1,212,464 + DZA65_RS05880 0.18 +0.5 1,212,464 + DZA65_RS05880 0.18 +1.7 1,212,469 + DZA65_RS05880 0.18 -1.6 1,212,469 + DZA65_RS05880 0.18 -0.6 1,212,469 + DZA65_RS05880 0.18 -0.3 1,212,469 + DZA65_RS05880 0.18 +0.3 1,212,469 + DZA65_RS05880 0.18 +0.8 1,212,469 + DZA65_RS05880 0.18 +0.4 1,212,470 - DZA65_RS05880 0.18 +1.4 1,212,470 - DZA65_RS05880 0.18 -0.5 1,212,470 - DZA65_RS05880 0.18 -0.0 1,212,470 - DZA65_RS05880 0.18 +0.1 1,212,668 + DZA65_RS05880 0.25 +1.0 1,212,669 - DZA65_RS05880 0.25 +0.5 1,212,714 - DZA65_RS05880 0.27 -0.5 1,213,060 + DZA65_RS05880 0.40 -1.1 1,213,060 + DZA65_RS05880 0.40 +0.3 1,213,060 + DZA65_RS05880 0.40 +3.2 1,213,060 + DZA65_RS05880 0.40 +0.4 1,213,060 + DZA65_RS05880 0.40 -0.9 1,213,061 - DZA65_RS05880 0.40 +0.7 1,213,061 - DZA65_RS05880 0.40 -0.9 1,213,061 - DZA65_RS05880 0.40 -0.6 1,213,283 + DZA65_RS05880 0.48 +1.1 1,213,283 + DZA65_RS05880 0.48 -1.0 1,213,283 + DZA65_RS05880 0.48 +1.4 1,213,284 - DZA65_RS05880 0.48 -0.3 1,213,284 - DZA65_RS05880 0.48 +1.0 1,213,284 - DZA65_RS05880 0.48 -0.9 1,213,431 + DZA65_RS05880 0.53 -0.9 1,213,432 - DZA65_RS05880 0.53 -3.0 1,213,535 + DZA65_RS05880 0.57 +0.1 1,213,535 + DZA65_RS05880 0.57 +0.4 1,213,536 - DZA65_RS05880 0.57 +2.3 1,213,754 - DZA65_RS05880 0.65 +1.9 1,213,754 - DZA65_RS05880 0.65 -1.0 1,213,763 + DZA65_RS05880 0.66 -0.5 1,213,763 + DZA65_RS05880 0.66 -0.5 1,213,764 - DZA65_RS05880 0.66 +0.5 1,213,895 + +1.3 1,213,896 - DZA65_RS05880 0.71 -0.3 1,213,955 + DZA65_RS05880 0.73 +0.3 1,214,006 + DZA65_RS05880 0.75 -0.9 1,214,085 - DZA65_RS05880 0.78 +0.3 1,214,277 - DZA65_RS05880 0.85 +0.7 1,214,341 + DZA65_RS05880 0.87 -1.0 1,214,341 + DZA65_RS05880 0.87 +2.3 1,214,400 + DZA65_RS05880 0.89 -0.0 1,214,400 + DZA65_RS05880 0.89 -1.8 1,214,400 + DZA65_RS05880 0.89 +0.7 1,214,401 - DZA65_RS05880 0.89 -3.0 1,214,518 + -0.3 1,214,518 + -0.2 1,214,519 - +0.1 1,214,519 - +0.4 1,214,519 - -0.7 1,214,684 + +0.2 1,214,737 + -0.0 1,214,738 - -0.5 1,214,772 + +0.9 1,214,772 + +0.6 1,214,773 - +0.4 1,214,773 - -1.0 1,214,837 - +1.0 1,214,881 + -0.1 1,214,965 - -0.0 1,215,023 - -2.5 1,215,023 - -0.8 1,215,027 + -1.5 1,215,027 + -1.0 1,215,032 + +0.5 1,215,032 + -1.1 1,215,032 + +0.7 1,215,033 - +0.7 1,215,033 - -0.1 1,215,033 - -0.9 1,215,033 - -1.0 1,215,033 - -1.3 1,215,033 - +1.5 1,215,033 - -1.0 1,215,033 - -1.3 1,215,107 + -1.9 1,215,107 + -0.0 1,215,108 - -1.5 1,215,108 - +0.4 1,215,108 - -1.3 1,215,108 - -0.5 1,215,128 + +0.5 1,215,128 + -0.2 1,215,128 + +1.1 1,215,141 + -1.9 1,215,141 + -1.1 1,215,141 + -0.1 1,215,141 + -0.3 1,215,141 + -0.3 1,215,141 + -0.6 1,215,141 + -0.6 1,215,141 + +1.0 1,215,141 + +0.9 1,215,147 + +0.7 1,215,163 + +1.9 1,215,277 + DZA65_RS05885 0.25 -0.3 1,215,278 - DZA65_RS05885 0.25 -0.9 1,215,325 + -0.3 1,215,325 + DZA65_RS05885 0.36 -1.3 1,215,325 + DZA65_RS05885 0.36 +0.3 1,215,325 + DZA65_RS05885 0.36 -1.6 1,215,427 + DZA65_RS05885 0.58 -0.9 1,215,427 + DZA65_RS05885 0.58 -1.3 1,215,533 + DZA65_RS05885 0.82 +1.7 1,215,533 + DZA65_RS05885 0.82 -1.9 1,215,533 + DZA65_RS05885 0.82 +0.7 1,215,553 - DZA65_RS05885 0.86 -0.4 1,215,553 - DZA65_RS05885 0.86 -1.1 1,215,553 - DZA65_RS05885 0.86 +0.2 1,215,553 - DZA65_RS05885 0.86 +0.5 1,215,553 - DZA65_RS05885 0.86 -0.2 1,215,553 - DZA65_RS05885 0.86 +0.7 1,215,554 + DZA65_RS05885 0.87 -0.9 1,215,555 - DZA65_RS05885 0.87 -0.5 1,215,666 + -1.0
Or see this region's nucleotide sequence