Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02585 and DZA65_RS02590 overlap by 4 nucleotides DZA65_RS02590 and DZA65_RS02595 are separated by 230 nucleotides DZA65_RS02595 and DZA65_RS02600 are separated by 138 nucleotides
DZA65_RS02585: DZA65_RS02585 - hydroxyisourate hydrolase, at 555,558 to 555,890
_RS02585
DZA65_RS02590: DZA65_RS02590 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 555,887 to 556,387
_RS02590
DZA65_RS02595: DZA65_RS02595 - LysR family transcriptional regulator, at 556,618 to 557,556
_RS02595
DZA65_RS02600: DZA65_RS02600 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 557,695 to 558,729
_RS02600
Position (kb) 556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.658 kb on + strand, within DZA65_RS02585 at 555.658 kb on + strand, within DZA65_RS02585 at 555.658 kb on + strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.715 kb on + strand, within DZA65_RS02585 at 555.878 kb on + strand at 555.878 kb on + strand at 555.884 kb on + strand at 555.884 kb on + strand at 555.885 kb on - strand at 556.103 kb on - strand, within DZA65_RS02590 at 556.366 kb on + strand at 556.366 kb on + strand at 556.367 kb on - strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.377 kb on - strand at 556.377 kb on - strand at 556.377 kb on - strand at 556.377 kb on - strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.409 kb on - strand at 556.409 kb on - strand at 556.409 kb on - strand at 556.409 kb on - strand at 556.419 kb on + strand at 556.419 kb on + strand at 556.419 kb on + strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.480 kb on - strand at 556.480 kb on - strand at 556.480 kb on - strand at 556.491 kb on + strand at 556.491 kb on + strand at 556.491 kb on + strand at 556.492 kb on - strand at 556.492 kb on - strand at 556.492 kb on - strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.571 kb on + strand at 556.571 kb on + strand at 556.571 kb on + strand at 556.572 kb on - strand at 556.572 kb on - strand at 556.582 kb on + strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.599 kb on + strand at 556.689 kb on + strand at 556.690 kb on - strand at 556.696 kb on + strand at 556.696 kb on + strand at 556.696 kb on + strand at 556.812 kb on + strand, within DZA65_RS02595 at 556.813 kb on - strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.835 kb on - strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.928 kb on + strand, within DZA65_RS02595 at 556.929 kb on - strand, within DZA65_RS02595 at 556.972 kb on + strand, within DZA65_RS02595 at 557.157 kb on + strand, within DZA65_RS02595 at 557.157 kb on + strand, within DZA65_RS02595 at 557.158 kb on - strand, within DZA65_RS02595 at 557.158 kb on - strand, within DZA65_RS02595 at 557.158 kb on - strand, within DZA65_RS02595 at 557.175 kb on + strand, within DZA65_RS02595 at 557.175 kb on + strand, within DZA65_RS02595 at 557.213 kb on - strand, within DZA65_RS02595 at 557.230 kb on + strand, within DZA65_RS02595 at 557.231 kb on - strand, within DZA65_RS02595 at 557.231 kb on - strand, within DZA65_RS02595 at 557.327 kb on + strand, within DZA65_RS02595 at 557.327 kb on + strand, within DZA65_RS02595 at 557.327 kb on + strand, within DZA65_RS02595 at 557.328 kb on - strand, within DZA65_RS02595 at 557.328 kb on - strand, within DZA65_RS02595 at 557.328 kb on - strand, within DZA65_RS02595 at 557.357 kb on + strand, within DZA65_RS02595 at 557.357 kb on + strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.358 kb on - strand, within DZA65_RS02595 at 557.410 kb on + strand, within DZA65_RS02595 at 557.440 kb on + strand, within DZA65_RS02595 at 557.440 kb on + strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.441 kb on - strand, within DZA65_RS02595 at 557.523 kb on + strand at 557.524 kb on - strand at 557.528 kb on + strand at 557.528 kb on + strand at 557.529 kb on - strand at 557.529 kb on - strand at 557.569 kb on + strand at 557.570 kb on - strand at 557.627 kb on - strand at 557.635 kb on + strand at 557.635 kb on + strand at 557.635 kb on + strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.636 kb on - strand at 557.662 kb on - strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.663 kb on + strand at 557.664 kb on - strand at 557.846 kb on - strand, within DZA65_RS02600 at 557.880 kb on + strand at 557.880 kb on + strand, within DZA65_RS02600 at 557.880 kb on + strand, within DZA65_RS02600 at 557.880 kb on + strand, within DZA65_RS02600 at 557.880 kb on + strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 557.881 kb on - strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.215 kb on + strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.216 kb on - strand, within DZA65_RS02600 at 558.243 kb on + strand, within DZA65_RS02600 at 558.262 kb on - strand, within DZA65_RS02600 at 558.302 kb on - strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.319 kb on + strand, within DZA65_RS02600 at 558.320 kb on - strand, within DZA65_RS02600 at 558.510 kb on - strand, within DZA65_RS02600
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 555,654 + DZA65_RS02585 0.29 -0.4 555,654 + DZA65_RS02585 0.29 -0.9 555,654 + DZA65_RS02585 0.29 -3.1 555,654 + DZA65_RS02585 0.29 +0.2 555,654 + DZA65_RS02585 0.29 -0.6 555,654 + DZA65_RS02585 0.29 +1.6 555,654 + DZA65_RS02585 0.29 -0.1 555,654 + DZA65_RS02585 0.29 -0.8 555,654 + DZA65_RS02585 0.29 +0.0 555,654 + DZA65_RS02585 0.29 -0.4 555,655 - DZA65_RS02585 0.29 +1.7 555,655 - DZA65_RS02585 0.29 -0.3 555,655 - DZA65_RS02585 0.29 -0.6 555,655 - DZA65_RS02585 0.29 +0.1 555,655 - DZA65_RS02585 0.29 +0.9 555,655 - DZA65_RS02585 0.29 -0.4 555,658 + DZA65_RS02585 0.30 -1.1 555,658 + DZA65_RS02585 0.30 +1.9 555,658 + DZA65_RS02585 0.30 +1.6 555,659 - DZA65_RS02585 0.30 +0.1 555,659 - DZA65_RS02585 0.30 +0.9 555,659 - DZA65_RS02585 0.30 -0.6 555,659 - DZA65_RS02585 0.30 +0.2 555,659 - DZA65_RS02585 0.30 -0.5 555,659 - DZA65_RS02585 0.30 +0.9 555,715 + DZA65_RS02585 0.47 -0.5 555,878 + +0.4 555,878 + -0.1 555,884 + +0.7 555,884 + +0.8 555,885 - -0.1 556,103 - DZA65_RS02590 0.43 -1.8 556,366 + +0.8 556,366 + -1.9 556,367 - +0.2 556,376 + -1.6 556,376 + +0.5 556,376 + +0.4 556,376 + -0.6 556,376 + -0.9 556,376 + +0.4 556,376 + +0.4 556,376 + +0.7 556,377 - -0.4 556,377 - -0.5 556,377 - +2.0 556,377 - +0.0 556,408 + -0.1 556,408 + +0.7 556,408 + +0.4 556,408 + -2.2 556,408 + -0.4 556,409 - +0.9 556,409 - +0.0 556,409 - +0.1 556,409 - +0.3 556,419 + -1.4 556,419 + -0.2 556,419 + +0.5 556,420 - -0.6 556,420 - +0.1 556,420 - -0.1 556,420 - +0.7 556,420 - -1.6 556,480 - +1.3 556,480 - +1.1 556,480 - -1.6 556,491 + +0.9 556,491 + +0.3 556,491 + +0.3 556,492 - +0.9 556,492 - +0.6 556,492 - -0.9 556,534 + +0.1 556,534 + +0.3 556,534 + -0.6 556,534 + -1.4 556,534 + -0.2 556,534 + +0.3 556,534 + -0.7 556,534 + -2.4 556,534 + +0.8 556,534 + +2.8 556,534 + -0.3 556,535 - -0.6 556,535 - +0.4 556,535 - -1.9 556,535 - +0.2 556,535 - +0.9 556,571 + +0.5 556,571 + -1.3 556,571 + +0.5 556,572 - +0.4 556,572 - +0.0 556,582 + +0.6 556,583 - -0.2 556,583 - -0.8 556,583 - +0.5 556,599 + -1.1 556,689 + -0.2 556,690 - -0.3 556,696 + +0.2 556,696 + -0.2 556,696 + -1.6 556,812 + DZA65_RS02595 0.21 -0.7 556,813 - DZA65_RS02595 0.21 +1.1 556,814 + DZA65_RS02595 0.21 -0.3 556,814 + DZA65_RS02595 0.21 +0.6 556,814 + DZA65_RS02595 0.21 -0.3 556,814 + DZA65_RS02595 0.21 +0.1 556,814 + DZA65_RS02595 0.21 +0.8 556,814 + DZA65_RS02595 0.21 -1.1 556,815 - DZA65_RS02595 0.21 -2.1 556,815 - DZA65_RS02595 0.21 -0.8 556,815 - DZA65_RS02595 0.21 -0.1 556,815 - DZA65_RS02595 0.21 +0.6 556,815 - DZA65_RS02595 0.21 -1.4 556,835 - DZA65_RS02595 0.23 -0.1 556,928 + DZA65_RS02595 0.33 +0.9 556,928 + DZA65_RS02595 0.33 +0.4 556,928 + DZA65_RS02595 0.33 -0.6 556,928 + DZA65_RS02595 0.33 -0.2 556,928 + DZA65_RS02595 0.33 +2.3 556,929 - DZA65_RS02595 0.33 +0.4 556,972 + DZA65_RS02595 0.38 +1.2 557,157 + DZA65_RS02595 0.57 +0.5 557,157 + DZA65_RS02595 0.57 +0.2 557,158 - DZA65_RS02595 0.58 -0.1 557,158 - DZA65_RS02595 0.58 -1.5 557,158 - DZA65_RS02595 0.58 +1.2 557,175 + DZA65_RS02595 0.59 +0.4 557,175 + DZA65_RS02595 0.59 +0.1 557,213 - DZA65_RS02595 0.63 +2.1 557,230 + DZA65_RS02595 0.65 -1.9 557,231 - DZA65_RS02595 0.65 +0.1 557,231 - DZA65_RS02595 0.65 -0.3 557,327 + DZA65_RS02595 0.76 -0.3 557,327 + DZA65_RS02595 0.76 -3.1 557,327 + DZA65_RS02595 0.76 +0.5 557,328 - DZA65_RS02595 0.76 +0.4 557,328 - DZA65_RS02595 0.76 -0.6 557,328 - DZA65_RS02595 0.76 +0.8 557,357 + DZA65_RS02595 0.79 -1.4 557,357 + DZA65_RS02595 0.79 -0.2 557,358 - DZA65_RS02595 0.79 +0.3 557,358 - DZA65_RS02595 0.79 -0.7 557,358 - DZA65_RS02595 0.79 +0.7 557,358 - DZA65_RS02595 0.79 +0.6 557,410 + DZA65_RS02595 0.84 +0.5 557,440 + DZA65_RS02595 0.88 +0.1 557,440 + DZA65_RS02595 0.88 +0.5 557,441 - DZA65_RS02595 0.88 -1.0 557,441 - DZA65_RS02595 0.88 -1.1 557,441 - DZA65_RS02595 0.88 -0.6 557,441 - DZA65_RS02595 0.88 +2.6 557,523 + -0.9 557,524 - -1.1 557,528 + +0.6 557,528 + -0.3 557,529 - -1.1 557,529 - +1.2 557,569 + -0.1 557,570 - -0.1 557,627 - +1.3 557,635 + -2.4 557,635 + +1.9 557,635 + +0.9 557,636 - -1.1 557,636 - -1.3 557,636 - -0.6 557,636 - -1.1 557,636 - +0.4 557,662 - -1.1 557,663 + -1.9 557,663 + -0.2 557,663 + +0.8 557,663 + -0.1 557,663 + +0.9 557,663 + -0.8 557,663 + -0.4 557,664 - +0.9 557,846 - DZA65_RS02600 0.15 -0.2 557,880 + +1.3 557,880 + DZA65_RS02600 0.18 -0.4 557,880 + DZA65_RS02600 0.18 +0.9 557,880 + DZA65_RS02600 0.18 +0.4 557,880 + DZA65_RS02600 0.18 -0.9 557,881 - DZA65_RS02600 0.18 +0.6 557,881 - DZA65_RS02600 0.18 +0.9 557,881 - DZA65_RS02600 0.18 -1.7 557,881 - DZA65_RS02600 0.18 -0.1 558,215 + DZA65_RS02600 0.50 -0.4 558,215 + DZA65_RS02600 0.50 -1.9 558,215 + DZA65_RS02600 0.50 -1.1 558,215 + DZA65_RS02600 0.50 -0.3 558,216 - DZA65_RS02600 0.50 +1.3 558,216 - DZA65_RS02600 0.50 +0.9 558,216 - DZA65_RS02600 0.50 -1.4 558,216 - DZA65_RS02600 0.50 -1.7 558,243 + DZA65_RS02600 0.53 -0.6 558,262 - DZA65_RS02600 0.55 -0.4 558,302 - DZA65_RS02600 0.59 +0.7 558,319 + DZA65_RS02600 0.60 +0.7 558,319 + DZA65_RS02600 0.60 -1.4 558,319 + DZA65_RS02600 0.60 +0.1 558,319 + DZA65_RS02600 0.60 +0.7 558,319 + DZA65_RS02600 0.60 +0.7 558,320 - DZA65_RS02600 0.60 +1.4 558,510 - DZA65_RS02600 0.79 +0.0
Or see this region's nucleotide sequence