Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02250

Experiment: Norland

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS02245 and DZA65_RS02250 are separated by 2 nucleotidesDZA65_RS02250 and DZA65_RS02255 are separated by 13 nucleotidesDZA65_RS02255 and DZA65_RS02260 are separated by 94 nucleotides DZA65_RS02245: DZA65_RS02245 - transketolase, at 487,761 to 488,564 _RS02245 DZA65_RS02250: DZA65_RS02250 - transketolase, at 488,567 to 489,487 _RS02250 DZA65_RS02255: DZA65_RS02255 - D-threitol dehydrogenase, at 489,501 to 490,304 _RS02255 DZA65_RS02260: DZA65_RS02260 - substrate-binding domain-containing protein, at 490,399 to 491,334 _RS02260 Position (kb) 488 489 490Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 487.633 kb on + strandat 487.634 kb on - strandat 487.634 kb on - strandat 487.657 kb on - strandat 487.757 kb on - strandat 487.768 kb on + strandat 487.768 kb on + strandat 487.768 kb on + strandat 487.769 kb on - strandat 487.769 kb on - strandat 487.769 kb on - strandat 487.806 kb on + strandat 487.807 kb on - strandat 487.807 kb on - strandat 487.807 kb on - strandat 487.807 kb on - strandat 487.875 kb on - strand, within DZA65_RS02245at 487.875 kb on - strand, within DZA65_RS02245at 487.875 kb on - strand, within DZA65_RS02245at 487.875 kb on - strand, within DZA65_RS02245at 488.117 kb on - strand, within DZA65_RS02245at 488.117 kb on - strand, within DZA65_RS02245at 488.495 kb on - strandat 488.577 kb on + strandat 488.578 kb on - strandat 488.578 kb on - strandat 488.578 kb on - strandat 488.578 kb on - strandat 488.578 kb on - strandat 488.627 kb on - strandat 488.627 kb on - strandat 488.843 kb on + strand, within DZA65_RS02250at 488.844 kb on - strand, within DZA65_RS02250at 488.844 kb on - strand, within DZA65_RS02250at 488.844 kb on - strand, within DZA65_RS02250at 488.845 kb on + strand, within DZA65_RS02250at 488.845 kb on + strand, within DZA65_RS02250at 488.846 kb on - strand, within DZA65_RS02250at 488.846 kb on - strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strandat 489.035 kb on + strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.044 kb on - strandat 489.248 kb on - strand, within DZA65_RS02250at 489.248 kb on - strand, within DZA65_RS02250at 489.263 kb on + strand, within DZA65_RS02250at 489.263 kb on + strand, within DZA65_RS02250at 489.263 kb on + strand, within DZA65_RS02250at 489.264 kb on - strand, within DZA65_RS02250at 489.264 kb on - strand, within DZA65_RS02250at 489.264 kb on - strand, within DZA65_RS02250at 489.264 kb on - strand, within DZA65_RS02250at 489.264 kb on - strand, within DZA65_RS02250at 489.288 kb on + strand, within DZA65_RS02250at 489.288 kb on + strand, within DZA65_RS02250at 489.288 kb on + strandat 489.288 kb on + strand, within DZA65_RS02250at 489.288 kb on + strand, within DZA65_RS02250at 489.288 kb on + strand, within DZA65_RS02250at 489.289 kb on - strand, within DZA65_RS02250at 489.289 kb on - strandat 489.289 kb on - strand, within DZA65_RS02250at 489.289 kb on - strand, within DZA65_RS02250at 489.289 kb on - strand, within DZA65_RS02250at 489.289 kb on - strand, within DZA65_RS02250at 489.289 kb on - strand, within DZA65_RS02250at 489.331 kb on + strand, within DZA65_RS02250at 489.331 kb on + strand, within DZA65_RS02250at 489.332 kb on - strand, within DZA65_RS02250at 489.332 kb on - strand, within DZA65_RS02250at 489.386 kb on - strand, within DZA65_RS02250at 489.452 kb on - strandat 489.452 kb on - strandat 489.519 kb on + strandat 489.519 kb on + strandat 489.519 kb on + strandat 489.520 kb on - strandat 489.520 kb on - strandat 489.528 kb on - strandat 489.660 kb on + strand, within DZA65_RS02255at 489.661 kb on - strand, within DZA65_RS02255at 489.792 kb on + strand, within DZA65_RS02255at 489.802 kb on + strand, within DZA65_RS02255at 489.966 kb on - strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.097 kb on + strand, within DZA65_RS02255at 490.097 kb on + strand, within DZA65_RS02255at 490.098 kb on - strand, within DZA65_RS02255at 490.098 kb on - strand, within DZA65_RS02255at 490.098 kb on - strand, within DZA65_RS02255at 490.200 kb on + strand, within DZA65_RS02255at 490.201 kb on - strand, within DZA65_RS02255at 490.312 kb on - strandat 490.383 kb on + strandat 490.422 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Norland
remove
487,633 + -0.9
487,634 - -1.0
487,634 - -0.8
487,657 - +0.2
487,757 - -2.2
487,768 + -2.0
487,768 + -0.5
487,768 + -1.0
487,769 - +0.4
487,769 - -0.6
487,769 - -0.8
487,806 + -1.2
487,807 - -1.6
487,807 - -1.7
487,807 - -0.9
487,807 - -0.4
487,875 - DZA65_RS02245 0.14 -0.6
487,875 - DZA65_RS02245 0.14 +2.0
487,875 - DZA65_RS02245 0.14 +0.6
487,875 - DZA65_RS02245 0.14 -0.0
488,117 - DZA65_RS02245 0.44 +1.2
488,117 - DZA65_RS02245 0.44 -0.9
488,495 - -0.8
488,577 + -1.4
488,578 - +1.0
488,578 - -0.5
488,578 - -0.0
488,578 - -0.4
488,578 - +0.6
488,627 - +0.6
488,627 - -0.4
488,843 + DZA65_RS02250 0.30 -1.1
488,844 - DZA65_RS02250 0.30 -0.0
488,844 - DZA65_RS02250 0.30 -1.0
488,844 - DZA65_RS02250 0.30 -1.0
488,845 + DZA65_RS02250 0.30 +1.0
488,845 + DZA65_RS02250 0.30 +0.6
488,846 - DZA65_RS02250 0.30 +0.7
488,846 - DZA65_RS02250 0.30 +0.2
489,035 + DZA65_RS02250 0.51 +0.2
489,035 + DZA65_RS02250 0.51 +0.2
489,035 + DZA65_RS02250 0.51 -0.6
489,035 + DZA65_RS02250 0.51 -0.4
489,035 + DZA65_RS02250 0.51 -1.5
489,035 + DZA65_RS02250 0.51 +1.1
489,035 + DZA65_RS02250 0.51 -0.2
489,035 + DZA65_RS02250 0.51 +1.4
489,035 + +0.6
489,035 + DZA65_RS02250 0.51 -0.3
489,036 - DZA65_RS02250 0.51 -0.0
489,036 - DZA65_RS02250 0.51 +0.3
489,036 - DZA65_RS02250 0.51 -0.5
489,036 - DZA65_RS02250 0.51 -1.4
489,036 - DZA65_RS02250 0.51 -1.0
489,036 - DZA65_RS02250 0.51 -0.4
489,036 - DZA65_RS02250 0.51 -0.0
489,036 - DZA65_RS02250 0.51 +0.6
489,036 - DZA65_RS02250 0.51 +1.0
489,036 - DZA65_RS02250 0.51 -0.4
489,036 - DZA65_RS02250 0.51 +0.1
489,036 - DZA65_RS02250 0.51 -0.3
489,036 - DZA65_RS02250 0.51 -1.0
489,036 - DZA65_RS02250 0.51 +0.1
489,036 - DZA65_RS02250 0.51 -0.6
489,044 - +0.6
489,248 - DZA65_RS02250 0.74 -0.5
489,248 - DZA65_RS02250 0.74 +1.0
489,263 + DZA65_RS02250 0.76 -1.6
489,263 + DZA65_RS02250 0.76 -0.6
489,263 + DZA65_RS02250 0.76 -1.8
489,264 - DZA65_RS02250 0.76 +0.2
489,264 - DZA65_RS02250 0.76 -0.3
489,264 - DZA65_RS02250 0.76 -0.3
489,264 - DZA65_RS02250 0.76 +0.1
489,264 - DZA65_RS02250 0.76 -0.5
489,288 + DZA65_RS02250 0.78 -3.7
489,288 + DZA65_RS02250 0.78 -0.0
489,288 + -0.6
489,288 + DZA65_RS02250 0.78 -0.6
489,288 + DZA65_RS02250 0.78 -0.0
489,288 + DZA65_RS02250 0.78 -2.5
489,289 - DZA65_RS02250 0.78 +0.7
489,289 - +1.0
489,289 - DZA65_RS02250 0.78 -0.0
489,289 - DZA65_RS02250 0.78 +0.6
489,289 - DZA65_RS02250 0.78 -0.5
489,289 - DZA65_RS02250 0.78 +1.0
489,289 - DZA65_RS02250 0.78 -0.6
489,331 + DZA65_RS02250 0.83 -0.4
489,331 + DZA65_RS02250 0.83 -0.0
489,332 - DZA65_RS02250 0.83 -0.4
489,332 - DZA65_RS02250 0.83 -1.1
489,386 - DZA65_RS02250 0.89 -2.4
489,452 - -1.0
489,452 - -0.2
489,519 + +0.2
489,519 + -0.6
489,519 + -0.4
489,520 - +0.6
489,520 - -1.3
489,528 - -0.6
489,660 + DZA65_RS02255 0.20 -0.3
489,661 - DZA65_RS02255 0.20 +0.6
489,792 + DZA65_RS02255 0.36 +1.5
489,802 + DZA65_RS02255 0.37 +1.4
489,966 - DZA65_RS02255 0.58 +1.4
490,017 + DZA65_RS02255 0.64 -1.6
490,017 + DZA65_RS02255 0.64 +0.4
490,017 + DZA65_RS02255 0.64 +1.0
490,017 + DZA65_RS02255 0.64 +0.8
490,018 - DZA65_RS02255 0.64 -1.4
490,018 - DZA65_RS02255 0.64 -1.0
490,018 - DZA65_RS02255 0.64 +1.3
490,018 - DZA65_RS02255 0.64 -0.8
490,018 - DZA65_RS02255 0.64 -0.2
490,097 + DZA65_RS02255 0.74 +1.0
490,097 + DZA65_RS02255 0.74 +0.7
490,098 - DZA65_RS02255 0.74 -1.4
490,098 - DZA65_RS02255 0.74 -0.6
490,098 - DZA65_RS02255 0.74 -0.3
490,200 + DZA65_RS02255 0.87 -2.6
490,201 - DZA65_RS02255 0.87 -1.6
490,312 - +0.2
490,383 + -0.1
490,422 - +1.2

Or see this region's nucleotide sequence