Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01215 and DZA65_RS01220 are separated by 331 nucleotides DZA65_RS01220 and DZA65_RS01225 are separated by 105 nucleotides DZA65_RS01225 and DZA65_RS01230 are separated by 55 nucleotides
DZA65_RS01215: DZA65_RS01215 - phosphomethylpyrimidine synthase ThiC, at 271,068 to 273,035
_RS01215
DZA65_RS01220: DZA65_RS01220 - Rsd/AlgQ family anti-sigma factor, at 273,367 to 273,819
_RS01220
DZA65_RS01225: DZA65_RS01225 - NAD(+) diphosphatase, at 273,925 to 274,698
_RS01225
DZA65_RS01230: DZA65_RS01230 - uroporphyrinogen decarboxylase, at 274,754 to 275,827
_RS01230
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 272.928 kb on + strand at 272.928 kb on + strand at 272.928 kb on + strand at 272.929 kb on - strand at 273.011 kb on + strand at 273.012 kb on - strand at 273.029 kb on + strand at 273.029 kb on + strand at 273.029 kb on + strand at 273.029 kb on + strand at 273.030 kb on - strand at 273.030 kb on - strand at 273.035 kb on + strand at 273.036 kb on - strand at 273.036 kb on - strand at 273.036 kb on - strand at 273.036 kb on - strand at 273.054 kb on - strand at 273.090 kb on + strand at 273.139 kb on - strand at 273.188 kb on + strand at 273.188 kb on + strand at 273.189 kb on - strand at 273.189 kb on - strand at 273.189 kb on - strand at 273.189 kb on - strand at 273.209 kb on + strand at 273.209 kb on + strand at 273.209 kb on + strand at 273.209 kb on + strand at 273.209 kb on + strand at 273.209 kb on + strand at 273.209 kb on + strand at 273.209 kb on + strand at 273.209 kb on + strand at 273.209 kb on + strand at 273.210 kb on - strand at 273.210 kb on - strand at 273.210 kb on - strand at 273.210 kb on - strand at 273.210 kb on - strand at 273.210 kb on - strand at 273.210 kb on - strand at 273.210 kb on - strand at 273.213 kb on - strand at 273.243 kb on - strand at 273.243 kb on - strand at 273.271 kb on + strand at 273.315 kb on + strand at 273.315 kb on + strand at 273.316 kb on - strand at 273.316 kb on - strand at 273.316 kb on - strand at 273.316 kb on - strand at 273.316 kb on - strand at 273.316 kb on - strand at 273.316 kb on - strand at 273.316 kb on - strand at 273.331 kb on + strand at 273.331 kb on + strand at 273.332 kb on - strand at 273.332 kb on - strand at 273.362 kb on + strand at 273.362 kb on + strand at 273.362 kb on + strand at 273.362 kb on + strand at 273.362 kb on + strand at 273.362 kb on + strand at 273.362 kb on + strand at 273.362 kb on + strand at 273.362 kb on + strand at 273.363 kb on - strand at 273.363 kb on - strand at 273.363 kb on - strand at 273.363 kb on - strand at 273.363 kb on - strand at 273.379 kb on + strand at 273.379 kb on + strand at 273.379 kb on + strand at 273.379 kb on + strand at 273.380 kb on - strand at 273.380 kb on - strand at 273.380 kb on - strand at 273.380 kb on - strand at 273.380 kb on - strand at 273.380 kb on - strand at 273.380 kb on - strand at 273.380 kb on - strand at 273.506 kb on + strand, within DZA65_RS01220 at 273.506 kb on + strand, within DZA65_RS01220 at 273.507 kb on - strand, within DZA65_RS01220 at 273.507 kb on - strand, within DZA65_RS01220 at 273.507 kb on - strand, within DZA65_RS01220 at 273.507 kb on - strand, within DZA65_RS01220 at 273.510 kb on + strand, within DZA65_RS01220 at 273.510 kb on + strand, within DZA65_RS01220 at 273.511 kb on - strand, within DZA65_RS01220 at 273.516 kb on + strand, within DZA65_RS01220 at 273.517 kb on - strand, within DZA65_RS01220 at 273.517 kb on - strand, within DZA65_RS01220 at 273.517 kb on - strand, within DZA65_RS01220 at 273.614 kb on + strand, within DZA65_RS01220 at 273.615 kb on - strand, within DZA65_RS01220 at 273.615 kb on - strand, within DZA65_RS01220 at 273.615 kb on - strand, within DZA65_RS01220 at 273.615 kb on - strand, within DZA65_RS01220 at 273.615 kb on - strand, within DZA65_RS01220 at 273.641 kb on + strand, within DZA65_RS01220 at 273.641 kb on + strand, within DZA65_RS01220 at 273.641 kb on + strand, within DZA65_RS01220 at 273.641 kb on + strand, within DZA65_RS01220 at 273.641 kb on + strand, within DZA65_RS01220 at 273.641 kb on + strand, within DZA65_RS01220 at 273.641 kb on + strand, within DZA65_RS01220 at 273.642 kb on - strand, within DZA65_RS01220 at 273.642 kb on - strand, within DZA65_RS01220 at 273.642 kb on - strand, within DZA65_RS01220 at 273.642 kb on - strand, within DZA65_RS01220 at 273.642 kb on - strand, within DZA65_RS01220 at 273.642 kb on - strand, within DZA65_RS01220 at 273.642 kb on - strand, within DZA65_RS01220 at 273.705 kb on + strand, within DZA65_RS01220 at 273.706 kb on - strand, within DZA65_RS01220 at 273.720 kb on - strand, within DZA65_RS01220 at 273.720 kb on - strand, within DZA65_RS01220 at 273.720 kb on - strand, within DZA65_RS01220 at 273.720 kb on - strand, within DZA65_RS01220 at 273.720 kb on - strand, within DZA65_RS01220 at 273.720 kb on - strand, within DZA65_RS01220 at 273.722 kb on + strand, within DZA65_RS01220 at 273.722 kb on + strand, within DZA65_RS01220 at 273.723 kb on - strand, within DZA65_RS01220 at 273.723 kb on - strand, within DZA65_RS01220 at 273.742 kb on - strand, within DZA65_RS01220 at 273.773 kb on + strand, within DZA65_RS01220 at 273.773 kb on + strand, within DZA65_RS01220 at 273.773 kb on + strand, within DZA65_RS01220 at 273.774 kb on - strand at 273.774 kb on - strand at 273.774 kb on - strand at 273.774 kb on - strand at 273.774 kb on - strand at 273.774 kb on - strand at 273.774 kb on - strand at 273.774 kb on - strand at 273.774 kb on - strand at 273.774 kb on - strand at 273.805 kb on + strand at 273.805 kb on + strand at 273.805 kb on + strand at 273.805 kb on + strand at 273.806 kb on - strand at 273.806 kb on - strand at 273.806 kb on - strand at 273.806 kb on - strand at 273.806 kb on - strand at 273.806 kb on - strand at 273.806 kb on - strand at 273.806 kb on - strand at 273.839 kb on + strand at 273.840 kb on - strand at 273.840 kb on - strand at 273.840 kb on - strand at 273.860 kb on + strand at 273.861 kb on - strand at 273.861 kb on - strand at 273.861 kb on - strand at 273.866 kb on + strand at 273.866 kb on + strand at 273.866 kb on + strand at 273.867 kb on - strand at 273.867 kb on - strand at 273.867 kb on - strand at 273.867 kb on - strand at 273.867 kb on - strand at 273.867 kb on - strand at 273.870 kb on + strand at 273.871 kb on - strand at 273.872 kb on + strand at 273.873 kb on - strand at 273.873 kb on - strand at 273.873 kb on - strand at 273.873 kb on - strand at 273.878 kb on + strand at 273.884 kb on + strand at 273.885 kb on - strand at 273.885 kb on - strand at 273.903 kb on + strand at 273.903 kb on + strand at 273.904 kb on - strand at 273.904 kb on - strand at 273.917 kb on + strand at 273.917 kb on + strand at 273.917 kb on + strand at 273.918 kb on - strand at 273.918 kb on - strand at 273.970 kb on + strand at 273.970 kb on + strand at 273.970 kb on + strand at 273.970 kb on + strand at 273.970 kb on + strand at 273.970 kb on + strand at 273.970 kb on + strand at 273.970 kb on + strand at 273.970 kb on + strand at 273.971 kb on - strand at 273.971 kb on - strand at 273.971 kb on - strand at 273.971 kb on - strand at 273.971 kb on - strand at 274.086 kb on - strand, within DZA65_RS01225 at 274.104 kb on + strand, within DZA65_RS01225 at 274.104 kb on + strand, within DZA65_RS01225 at 274.105 kb on - strand, within DZA65_RS01225 at 274.260 kb on - strand, within DZA65_RS01225 at 274.260 kb on - strand, within DZA65_RS01225 at 274.281 kb on + strand, within DZA65_RS01225 at 274.281 kb on + strand, within DZA65_RS01225 at 274.282 kb on - strand, within DZA65_RS01225 at 274.282 kb on - strand, within DZA65_RS01225 at 274.291 kb on + strand, within DZA65_RS01225 at 274.291 kb on + strand, within DZA65_RS01225 at 274.291 kb on + strand, within DZA65_RS01225 at 274.292 kb on - strand, within DZA65_RS01225 at 274.304 kb on + strand, within DZA65_RS01225 at 274.304 kb on + strand, within DZA65_RS01225 at 274.304 kb on + strand, within DZA65_RS01225 at 274.304 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.384 kb on + strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.385 kb on - strand, within DZA65_RS01225 at 274.464 kb on + strand, within DZA65_RS01225 at 274.465 kb on - strand, within DZA65_RS01225 at 274.486 kb on + strand, within DZA65_RS01225 at 274.486 kb on + strand, within DZA65_RS01225 at 274.486 kb on + strand, within DZA65_RS01225 at 274.486 kb on + strand, within DZA65_RS01225 at 274.487 kb on - strand, within DZA65_RS01225 at 274.487 kb on - strand, within DZA65_RS01225 at 274.487 kb on - strand, within DZA65_RS01225 at 274.487 kb on - strand at 274.487 kb on - strand, within DZA65_RS01225 at 274.487 kb on - strand, within DZA65_RS01225 at 274.546 kb on + strand, within DZA65_RS01225 at 274.546 kb on + strand, within DZA65_RS01225 at 274.546 kb on + strand, within DZA65_RS01225 at 274.606 kb on + strand, within DZA65_RS01225 at 274.670 kb on + strand at 274.670 kb on + strand at 274.670 kb on + strand at 274.670 kb on + strand at 274.671 kb on - strand at 274.673 kb on + strand at 274.673 kb on + strand at 274.673 kb on + strand at 274.673 kb on + strand at 274.673 kb on + strand at 274.673 kb on + strand at 274.673 kb on + strand at 274.673 kb on + strand at 274.674 kb on - strand at 274.674 kb on - strand at 274.674 kb on - strand at 274.674 kb on - strand at 274.674 kb on - strand at 274.674 kb on - strand at 274.674 kb on - strand at 274.674 kb on - strand at 274.739 kb on + strand at 274.739 kb on + strand at 274.739 kb on + strand at 274.740 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 272,928 + +1.1 272,928 + +1.1 272,928 + -1.0 272,929 - -2.1 273,011 + +0.3 273,012 - -1.5 273,029 + +1.4 273,029 + -0.4 273,029 + +1.1 273,029 + +0.1 273,030 - -0.5 273,030 - -0.5 273,035 + +0.3 273,036 - +1.1 273,036 - -1.2 273,036 - -0.5 273,036 - +0.1 273,054 - +0.4 273,090 + -1.4 273,139 - +0.6 273,188 + +0.9 273,188 + -1.5 273,189 - -0.4 273,189 - -0.7 273,189 - -0.1 273,189 - -0.2 273,209 + +0.4 273,209 + +1.4 273,209 + +1.1 273,209 + +1.0 273,209 + +0.7 273,209 + +0.1 273,209 + +1.4 273,209 + +0.4 273,209 + -0.1 273,209 + -0.6 273,210 - +1.4 273,210 - +0.3 273,210 - -0.5 273,210 - -0.2 273,210 - -0.8 273,210 - +1.8 273,210 - +0.3 273,210 - +0.1 273,213 - +0.3 273,243 - -0.2 273,243 - -0.5 273,271 + +1.1 273,315 + -0.1 273,315 + +0.2 273,316 - -0.5 273,316 - -0.3 273,316 - +0.1 273,316 - -0.6 273,316 - -2.3 273,316 - +0.4 273,316 - +0.1 273,316 - +0.5 273,331 + -0.3 273,331 + +0.1 273,332 - -0.4 273,332 - -3.2 273,362 + -2.1 273,362 + -0.5 273,362 + -1.3 273,362 + -0.9 273,362 + -2.1 273,362 + +0.7 273,362 + +0.2 273,362 + +1.1 273,362 + -0.2 273,363 - +0.5 273,363 - -0.3 273,363 - -0.9 273,363 - +0.6 273,363 - +1.6 273,379 + -1.4 273,379 + -0.1 273,379 + -1.4 273,379 + +0.1 273,380 - -1.5 273,380 - +0.4 273,380 - -1.9 273,380 - +1.7 273,380 - -0.5 273,380 - -0.1 273,380 - -0.2 273,380 - +0.0 273,506 + DZA65_RS01220 0.31 +0.1 273,506 + DZA65_RS01220 0.31 +0.4 273,507 - DZA65_RS01220 0.31 -0.1 273,507 - DZA65_RS01220 0.31 +0.3 273,507 - DZA65_RS01220 0.31 -0.9 273,507 - DZA65_RS01220 0.31 +1.8 273,510 + DZA65_RS01220 0.32 -0.7 273,510 + DZA65_RS01220 0.32 -0.3 273,511 - DZA65_RS01220 0.32 -2.4 273,516 + DZA65_RS01220 0.33 +1.6 273,517 - DZA65_RS01220 0.33 +0.5 273,517 - DZA65_RS01220 0.33 -1.1 273,517 - DZA65_RS01220 0.33 -0.2 273,614 + DZA65_RS01220 0.55 +2.3 273,615 - DZA65_RS01220 0.55 +0.1 273,615 - DZA65_RS01220 0.55 +0.8 273,615 - DZA65_RS01220 0.55 -0.7 273,615 - DZA65_RS01220 0.55 +0.4 273,615 - DZA65_RS01220 0.55 -1.5 273,641 + DZA65_RS01220 0.60 +0.9 273,641 + DZA65_RS01220 0.60 +0.3 273,641 + DZA65_RS01220 0.60 -0.5 273,641 + DZA65_RS01220 0.60 +0.1 273,641 + DZA65_RS01220 0.60 +1.9 273,641 + DZA65_RS01220 0.60 +0.8 273,641 + DZA65_RS01220 0.60 +1.8 273,642 - DZA65_RS01220 0.61 +1.6 273,642 - DZA65_RS01220 0.61 -0.2 273,642 - DZA65_RS01220 0.61 -0.1 273,642 - DZA65_RS01220 0.61 -1.2 273,642 - DZA65_RS01220 0.61 +0.4 273,642 - DZA65_RS01220 0.61 -1.3 273,642 - DZA65_RS01220 0.61 -0.5 273,705 + DZA65_RS01220 0.75 +0.7 273,706 - DZA65_RS01220 0.75 +0.1 273,720 - DZA65_RS01220 0.78 -0.1 273,720 - DZA65_RS01220 0.78 +0.5 273,720 - DZA65_RS01220 0.78 +0.2 273,720 - DZA65_RS01220 0.78 -0.4 273,720 - DZA65_RS01220 0.78 +0.1 273,720 - DZA65_RS01220 0.78 -0.9 273,722 + DZA65_RS01220 0.78 -1.6 273,722 + DZA65_RS01220 0.78 -0.5 273,723 - DZA65_RS01220 0.79 +0.1 273,723 - DZA65_RS01220 0.79 +0.2 273,742 - DZA65_RS01220 0.83 -0.9 273,773 + DZA65_RS01220 0.90 -1.1 273,773 + DZA65_RS01220 0.90 -1.3 273,773 + DZA65_RS01220 0.90 +2.1 273,774 - +0.3 273,774 - -0.2 273,774 - +0.1 273,774 - -1.5 273,774 - -0.3 273,774 - +0.3 273,774 - +0.3 273,774 - -1.7 273,774 - +0.1 273,774 - +0.6 273,805 + +0.1 273,805 + -0.5 273,805 + +0.7 273,805 + -1.4 273,806 - -0.9 273,806 - -0.5 273,806 - +1.2 273,806 - -0.2 273,806 - -0.2 273,806 - -1.6 273,806 - -0.1 273,806 - -0.3 273,839 + +0.1 273,840 - -1.0 273,840 - +0.3 273,840 - +1.1 273,860 + -0.5 273,861 - +1.8 273,861 - +0.3 273,861 - -2.4 273,866 + -1.5 273,866 + -0.5 273,866 + -1.4 273,867 - +0.6 273,867 - -0.9 273,867 - +0.1 273,867 - -0.5 273,867 - -0.7 273,867 - -0.9 273,870 + +0.6 273,871 - -0.2 273,872 + +0.5 273,873 - -0.2 273,873 - -0.3 273,873 - -1.9 273,873 - -0.8 273,878 + -0.2 273,884 + -0.9 273,885 - -1.5 273,885 - +0.5 273,903 + +0.1 273,903 + +0.7 273,904 - +0.1 273,904 - +1.9 273,917 + -0.5 273,917 + -0.5 273,917 + -0.2 273,918 - -0.7 273,918 - +0.1 273,970 + -1.1 273,970 + +0.4 273,970 + -0.4 273,970 + -0.9 273,970 + -0.3 273,970 + -1.8 273,970 + -0.5 273,970 + -0.5 273,970 + +0.6 273,971 - -1.3 273,971 - +1.1 273,971 - +0.8 273,971 - +1.4 273,971 - +0.3 274,086 - DZA65_RS01225 0.21 -0.3 274,104 + DZA65_RS01225 0.23 -0.9 274,104 + DZA65_RS01225 0.23 +1.6 274,105 - DZA65_RS01225 0.23 +1.1 274,260 - DZA65_RS01225 0.43 +2.3 274,260 - DZA65_RS01225 0.43 +0.9 274,281 + DZA65_RS01225 0.46 -0.4 274,281 + DZA65_RS01225 0.46 -0.7 274,282 - DZA65_RS01225 0.46 +0.1 274,282 - DZA65_RS01225 0.46 +0.6 274,291 + DZA65_RS01225 0.47 +0.5 274,291 + DZA65_RS01225 0.47 -2.9 274,291 + DZA65_RS01225 0.47 +0.5 274,292 - DZA65_RS01225 0.47 -0.5 274,304 + DZA65_RS01225 0.49 -0.9 274,304 + DZA65_RS01225 0.49 +0.3 274,304 + DZA65_RS01225 0.49 +0.2 274,304 + DZA65_RS01225 0.49 -1.5 274,384 + DZA65_RS01225 0.59 -1.7 274,384 + DZA65_RS01225 0.59 -2.3 274,384 + DZA65_RS01225 0.59 -0.1 274,384 + DZA65_RS01225 0.59 +1.3 274,384 + DZA65_RS01225 0.59 +0.1 274,384 + DZA65_RS01225 0.59 +1.1 274,384 + DZA65_RS01225 0.59 -0.9 274,384 + DZA65_RS01225 0.59 +0.1 274,384 + DZA65_RS01225 0.59 -1.3 274,384 + DZA65_RS01225 0.59 +0.5 274,384 + DZA65_RS01225 0.59 +0.3 274,384 + DZA65_RS01225 0.59 +1.1 274,384 + DZA65_RS01225 0.59 +1.7 274,384 + DZA65_RS01225 0.59 -2.1 274,384 + DZA65_RS01225 0.59 -0.5 274,384 + DZA65_RS01225 0.59 +3.1 274,385 - DZA65_RS01225 0.59 -1.3 274,385 - DZA65_RS01225 0.59 -0.8 274,385 - DZA65_RS01225 0.59 -0.2 274,385 - DZA65_RS01225 0.59 +0.2 274,385 - DZA65_RS01225 0.59 +1.5 274,385 - DZA65_RS01225 0.59 +0.1 274,385 - DZA65_RS01225 0.59 +0.1 274,385 - DZA65_RS01225 0.59 -0.1 274,385 - DZA65_RS01225 0.59 -0.5 274,385 - DZA65_RS01225 0.59 -0.6 274,385 - DZA65_RS01225 0.59 +0.2 274,385 - DZA65_RS01225 0.59 -0.5 274,385 - DZA65_RS01225 0.59 +0.3 274,385 - DZA65_RS01225 0.59 +0.5 274,385 - DZA65_RS01225 0.59 +0.3 274,385 - DZA65_RS01225 0.59 -0.5 274,385 - DZA65_RS01225 0.59 +1.1 274,464 + DZA65_RS01225 0.70 +1.1 274,465 - DZA65_RS01225 0.70 +1.3 274,486 + DZA65_RS01225 0.72 -0.8 274,486 + DZA65_RS01225 0.72 +0.3 274,486 + DZA65_RS01225 0.72 +2.1 274,486 + DZA65_RS01225 0.72 +0.9 274,487 - DZA65_RS01225 0.73 +0.2 274,487 - DZA65_RS01225 0.73 +0.1 274,487 - DZA65_RS01225 0.73 +0.7 274,487 - +1.1 274,487 - DZA65_RS01225 0.73 +0.5 274,487 - DZA65_RS01225 0.73 -1.6 274,546 + DZA65_RS01225 0.80 +1.1 274,546 + DZA65_RS01225 0.80 -1.4 274,546 + DZA65_RS01225 0.80 -0.1 274,606 + DZA65_RS01225 0.88 +2.1 274,670 + -1.5 274,670 + +0.1 274,670 + -0.1 274,670 + -0.8 274,671 - +0.1 274,673 + -0.7 274,673 + +1.1 274,673 + +0.1 274,673 + +0.7 274,673 + +0.7 274,673 + -0.7 274,673 + +1.6 274,673 + -0.6 274,674 - -0.3 274,674 - +0.1 274,674 - +0.1 274,674 - +0.6 274,674 - +0.6 274,674 - +1.1 274,674 - -0.5 274,674 - +0.7 274,739 + -0.6 274,739 + +0.5 274,739 + +0.3 274,740 - -0.4
Or see this region's nucleotide sequence