Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18505

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,988,639	+		DZA65_RS18500	0.79	-0.7
3,988,640	-		DZA65_RS18500	0.79	-0.6
3,988,640	-		DZA65_RS18500	0.79	-0.2
3,988,640	-		DZA65_RS18500	0.79	-0.5
3,988,750	+				-0.5
3,988,751	-				+1.2
3,988,789	+				-1.5
3,988,789	+				+0.7
3,988,789	+				+1.2
3,988,790	-				-0.7
3,988,790	-				-1.6
3,988,790	-				+1.3
3,988,793	-				-1.7
3,988,793	-				+0.1
3,988,793	-				+0.4
3,988,808	+				-0.6
3,988,809	-				+0.7
3,988,809	-				-0.5
3,988,855	+				-0.3
3,988,856	-				-0.4
3,988,885	+				-0.5
3,988,885	+				+0.9
3,988,886	-				-0.9
3,988,901	-				+0.9
3,988,921	+				+0.0
3,988,931	+				-0.9
3,988,939	-				-0.1
3,988,949	+				-0.5
3,988,959	+				+0.6
3,989,022	+				+0.5
3,989,025	+				+0.9
3,989,026	-				+0.6
3,989,063	+				+0.7
3,989,063	+				-0.9
3,989,063	+				+0.4
3,989,064	-				+0.1
3,989,075	+				+1.3
3,989,075	+				-0.5
3,989,075	+				-1.3
3,989,134	+				+1.7
3,989,134	+				+0.4
3,989,135	-				+0.4
3,989,151	-				-0.4
3,989,151	-				-0.4
3,989,151	-				-0.4
3,989,156	-				-2.3
3,989,156	-				-0.4
3,989,196	+				-0.9
3,989,197	-				+0.1
3,989,241	+				-1.0
3,989,241	+				-0.0
3,989,242	-				-0.0
3,989,242	-				+0.2
3,989,244	+				-1.6
3,989,287	+				-0.0
3,989,287	+				-0.7
3,989,287	+				-0.1
3,989,287	+				-0.9
3,989,287	+				-0.4
3,989,287	+				-0.4
3,989,288	-				+0.0
3,989,288	-				-0.1
3,989,288	-				-0.6
3,989,288	-				-0.4
3,989,288	-				+1.0
3,989,291	+				-0.1
3,989,292	-				-0.5
3,989,292	-				+0.7
3,989,292	-				+0.5
3,989,292	-				-0.5
3,989,296	+				+1.9
3,989,297	-				+1.0
3,989,297	-				-0.7
3,989,297	-				+0.5
3,989,365	+				+0.4
3,989,365	+				+0.0
3,989,365	+				+0.3
3,989,365	+				+1.5
3,989,365	+				-0.4
3,989,365	+				-0.9
3,989,366	-				-0.2
3,989,366	-				-1.0
3,989,366	-				-1.5
3,989,420	+				-0.1
3,989,421	-				-0.9
3,989,472	-				-1.1
3,989,522	-				-0.3
3,989,522	-				-0.1
3,989,522	-				+1.2
3,989,522	-				-1.6
3,989,528	-				-0.3
3,989,528	-				-0.5
3,989,528	-				-1.9
3,989,528	-				-0.3
3,989,528	-				-0.8
3,989,528	-				+0.8
3,989,528	-				+0.3
3,989,531	-				+1.0
3,989,531	-				+0.7
3,989,531	-				+0.1
3,989,531	-				-0.8
3,989,541	-				+1.0
3,989,544	-				+0.1
3,989,544	-				-0.0
3,989,544	-				+0.7
3,989,544	-				-0.0
3,989,590	+				-0.8
3,989,596	+				-0.0
3,989,604	+				-1.9
3,989,611	+				-0.9
3,989,643	+				-0.3
3,989,644	-				-1.0
3,989,644	-				+0.4
3,989,738	+		DZA65_RS18505	0.10	+0.5
3,989,739	-		DZA65_RS18505	0.11	+0.7
3,989,764	+		DZA65_RS18505	0.13	-2.6
3,989,765	-		DZA65_RS18505	0.13	+1.2
3,989,765	-		DZA65_RS18505	0.13	-0.5
3,989,924	-		DZA65_RS18505	0.29	-1.1
3,990,167	+		DZA65_RS18505	0.53	-2.6
3,990,167	+		DZA65_RS18505	0.53	-1.0
3,990,216	+		DZA65_RS18505	0.58	-0.7
3,990,272	+		DZA65_RS18505	0.63	-0.6
3,990,273	-		DZA65_RS18505	0.63	-1.3
3,990,273	-		DZA65_RS18505	0.63	-1.0
3,990,278	-		DZA65_RS18505	0.64	-0.9
3,990,361	+		DZA65_RS18505	0.72	+0.7
3,990,361	+		DZA65_RS18505	0.72	+0.7
3,990,361	+		DZA65_RS18505	0.72	+1.1
3,990,361	+		DZA65_RS18505	0.72	+0.3
3,990,361	+		DZA65_RS18505	0.72	-1.3
3,990,361	+		DZA65_RS18505	0.72	+0.2
3,990,361	+				-0.9
3,990,362	-		DZA65_RS18505	0.72	+1.1
3,990,362	-		DZA65_RS18505	0.72	-0.2
3,990,411	+		DZA65_RS18505	0.77	+0.5
3,990,412	-		DZA65_RS18505	0.77	-0.2
3,990,412	-		DZA65_RS18505	0.77	+1.3
3,990,429	+		DZA65_RS18505	0.79	-1.8
3,990,430	-		DZA65_RS18505	0.79	-0.5
3,990,430	-		DZA65_RS18505	0.79	-2.5
3,990,458	+		DZA65_RS18505	0.82	-1.1
3,990,458	+		DZA65_RS18505	0.82	+0.9
3,990,459	-		DZA65_RS18505	0.82	-0.5
3,990,459	-		DZA65_RS18505	0.82	-0.5
3,990,459	-		DZA65_RS18505	0.82	-0.2
3,990,459	-		DZA65_RS18505	0.82	-0.4
3,990,486	+				+0.4
3,990,486	+		DZA65_RS18505	0.84	+0.2
3,990,631	-				+0.5
3,990,645	+				+0.3
3,990,645	+				-0.8
3,990,645	+				+1.7
3,990,645	+				+0.5
3,990,645	+				+0.1
3,990,645	+				-0.9
3,990,645	+				+1.3
3,990,645	+				+0.4
3,990,646	-				-1.5
3,990,648	+				+0.4
3,990,656	+				-0.7
3,990,656	+				+1.0
3,990,657	-				+0.5
3,990,657	-				+2.0
3,990,657	-				+1.4
3,990,670	+				-0.7
3,990,671	-				-0.3
3,990,671	-				-0.3
3,990,671	-				-0.3
3,990,671	-				-0.1
3,990,676	+				+0.3
3,990,677	-				-0.4
3,990,677	-				+0.7
3,990,686	+				+0.6
3,990,686	+				+0.7
3,990,686	+				-1.1
3,990,687	-				-1.3
3,990,690	+				-0.2
3,991,034	+				-0.1
3,991,034	+				-1.7
3,991,034	+				-1.9
3,991,034	+				-0.9
3,991,035	-				-0.1
3,991,035	-				+0.7
3,991,035	-				+1.4
3,991,079	+		DZA65_RS18515	0.14	+0.1
3,991,079	+		DZA65_RS18515	0.14	-0.3
3,991,080	-		DZA65_RS18515	0.14	+1.0
3,991,080	-		DZA65_RS18515	0.14	-0.4
3,991,100	+		DZA65_RS18515	0.19	+0.4
3,991,100	+		DZA65_RS18515	0.19	+0.4
3,991,101	-		DZA65_RS18515	0.19	-0.2
3,991,101	-		DZA65_RS18515	0.19	+0.4
3,991,101	-		DZA65_RS18515	0.19	-0.2
3,991,101	-		DZA65_RS18515	0.19	-0.1
3,991,101	-		DZA65_RS18515	0.19	+0.2
3,991,101	-		DZA65_RS18515	0.19	-1.3
3,991,103	+		DZA65_RS18515	0.19	+1.2
3,991,103	+		DZA65_RS18515	0.19	-0.4
3,991,122	-		DZA65_RS18515	0.23	-1.1
3,991,128	-		DZA65_RS18515	0.25	-0.9
3,991,128	-		DZA65_RS18515	0.25	+0.2
3,991,177	+		DZA65_RS18515	0.36	+0.2
3,991,177	+		DZA65_RS18515	0.36	-0.7
3,991,178	-		DZA65_RS18515	0.36	+0.7
3,991,178	-		DZA65_RS18515	0.36	+1.0
3,991,220	+		DZA65_RS18515	0.45	+2.0
3,991,220	+		DZA65_RS18515	0.45	+0.4
3,991,221	-		DZA65_RS18515	0.45	-0.1
3,991,221	-		DZA65_RS18515	0.45	+0.2
3,991,221	-		DZA65_RS18515	0.45	-0.1
3,991,221	-		DZA65_RS18515	0.45	-2.1
3,991,221	-		DZA65_RS18515	0.45	-0.9
3,991,277	-		DZA65_RS18515	0.57	+0.1
3,991,470	+				-0.2
3,991,470	+				+0.6
3,991,476	+				+1.1
3,991,476	+				-0.1
3,991,477	-				-2.5
3,991,487	+				-1.1
3,991,487	+				+0.2
3,991,487	+				+0.5
3,991,487	+				-0.1
3,991,488	-				-0.5
3,991,494	-				-1.3
3,991,494	-				-0.7
3,991,548	+				+0.3
3,991,548	+				-1.5
3,991,548	+				+1.2
3,991,548	+				+0.7
3,991,549	-				-0.7
3,991,552	+				-1.3
3,991,553	-				+0.5
3,991,637	-		DZA65_RS18520	0.17	+0.5